18 results on '"Pan, Yiheng"'
Search Results
2. Effects of nanosilica on the properties of brine-base drilling fluid
- Author
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Xia, Peng and Pan, Yiheng
- Published
- 2023
- Full Text
- View/download PDF
3. Cardiovascular risk of gabapentin and pregabalin in patients with diabetic neuropathy
- Author
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Pan, Yiheng, Davis, Pamela B., Kaebler, David C., Blankfield, Robert P., and Xu, Rong
- Published
- 2022
- Full Text
- View/download PDF
4. Mining comorbidities of opioid use disorder from FDA adverse event reporting system and patient electronic health records
- Author
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Pan, Yiheng and Xu, Rong
- Published
- 2022
- Full Text
- View/download PDF
5. Association of adverse cardiovascular events with gabapentin and pregabalin among patients with fibromyalgia.
- Author
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Pan, Yiheng, Blankfield, Robert P., Kaelber, David C., and Xu, Rong
- Subjects
- *
FIBROMYALGIA , *GABAPENTIN , *VENOUS thrombosis , *PREGABALIN , *MYOCARDIAL infarction - Abstract
Objective: Fibromyalgia, a chronic pain disorder, impacts approximately 2% of adults in the US. Gabapentin and pregabalin are common treatments to manage fibromyalgia-related pain. Our recent study showed the risk of adverse cardiovascular events increased in diabetic neuropathy patients who were prescribed gabapentin or pregabalin. Here, we investigated whether the prescription of gabapentin or pregabalin has similar cardiovascular risk in patients with fibromyalgia. Methods: This retrospective cohort study leveraged electronic health records from 64 US healthcare organizations with 112 million patients. The study population included 105,602 patients first diagnosed with fibromyalgia and followed by a prescription of gabapentin, pregabalin, or other FDA-approved drugs for treating fibromyalgia from 2010 to 2019. Outcomes were deep venous thrombosis (DVT), myocardial infarcts (MI), peripheral vascular disease (PVD), strokes, heart failure, and pulmonary embolism (PE). In propensity-score-matched cohorts, 1-year and 5-year hazard ratios (HRs) were computed with their respective 95% confidence intervals (CIs). Additionally, we conducted sensitivity analyses on the subpopulations without other possible indications. Results: For 5-year follow-up, gabapentin increased the risk of PVD (HR = 1.46, 95% CI = 1.17–1.80), MI (HR = 1.31, 95% CI = 1.03–1.66), heart failure (HR = 1.27, 95% CI = 1.10–1.48), DVT (HR = 1.80, 95% CI = 1.33–2.44), and PE (HR = 2.23, 95% CI = 1.62–3.07). Pregabalin increased the risk of DVT (HR = 1.49, 95% CI = 1.01–2.20), and PE (HR = 2.24, 95% CI = 1.43–3.50). For 1-year follow-up, gabapentin increased the risk of PVD (HR = 1.32, 95% CI = 1.11–1.57), DVT (HR = 1.35, 95% CI = 1.09–1.68), and PE (HR = 1.36, 95% CI = 1.17–1.57). Pregabalin increased the risk of PVD (HR = 1.32, 95% CI = 1.06–1.63) and PE (HR = 1.25, 95% CI = 1.03–1.52). Sensitivity analyses showed similar trends. Conclusion: In fibromyalgia patients, the prescription of gabapentin and pregabalin moderately increased the risk of several adverse cardiovascular events. This risk, together with benefits and other adverse reactions, should be considered when prescribing these medications for fibromyalgia patients. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
6. Hyperchloremia in critically ill patients: association with outcomes and prediction using electronic health record data
- Author
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Yeh, Pete, Pan, Yiheng, Sanchez-Pinto, L. Nelson, and Luo, Yuan
- Published
- 2020
- Full Text
- View/download PDF
7. A knowledge graph-based disease-gene prediction system using multi-relational graph convolution networks
- Author
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Gao, Zhenxiang, Pan, Yiheng, Ding, Pingjian, and Xu, Rong
- Subjects
Articles - Abstract
Identifying disease-gene associations is important for understanding molecule mechanisms of diseases, finding diagnostic markers and therapeutic targets. Many computational methods have been proposed to predict disease related genes by integrating different biological databases into heterogeneous networks. However, it remains a challenging task to leverage heterogeneous topological and semantic information from multi-source biological data to enhance disease-gene prediction. In this study, we propose a knowledge graph-based disease-gene prediction system (GenePredict-KG) by modeling semantic relations extracted from various genotypic and phenotypic databases. We first constructed a knowledge graph that comprised 2,292,609 associations between 73,358 entities for 14 types of phenotypic and genotypic relations and 7 entity types. We developed a knowledge graph embedding model to learn low-dimensional representations of entities and relations, and utilized these embeddings to infer new disease-gene interactions. We compared GenePredict-KG with several state-of-the-art models using multiple evaluation metrics. GenePredict-KG achieved high performances [AUROC (the area under receiver operating characteristic) = 0.978, AUPR (the area under precision-recall) = 0.343 and MRR (the mean reciprocal rank) = 0.244], outperforming other state-of-art methods.
- Published
- 2023
8. Analytical Solution for Water Inflow into Deeply Buried Symmetrical Subsea Tunnels with Excavation Damage Zones.
- Author
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Pan, Yiheng, Qi, Jiarui, Zhang, Jinfeng, Xia, Peng, and Peng, Yaxiong
- Subjects
TUNNELS ,ANALYTICAL solutions ,WATER tunnels ,CONFORMAL mapping ,SUPERPOSITION principle (Physics) ,QUANTUM tunneling - Abstract
The water inflow into tunnels will vary with the development of excavation damage zones (EDZs). Currently, there are few analytical studies on the evaluation of the water inflow into deeply buried symmetrical subsea tunnels, considering the influence of EDZs. Therefore, a solution was analytically developed using seepage mechanics, conformal mappings, and the superposition principle. The proposed solution was verified with a simplified solution and a numerical solution. A range of parametric analyses were performed to determine the effects of EDZs and spatial parameters on the water inflow, and an application to an engineering case was carried out. The results in this study reveal that the relative error between the proposed solution and the numerical solution is always less than 2.5% when the ratio of the buried depth to the radius of the tunnel is greater than or equal to 4. The water inflow increases significantly at an early stage of increasing the EDZ permeability coefficient, then gradually stabilizes and increases approximately linearly with the EDZ thickness. The effects of EDZs are greater with smaller buried depths and greater distances between the two tunnel centres. Compared with a single subsea tunnel, there is a diverting effect between the symmetrical subsea tunnels, which can be promoted by increasing the EDZ parameters. Moreover, this diverting effect increases as the buried depth increases and the distance between the two tunnel centres decreases. The application in this study shows that an increase of 13.82% to 30.42% in the water inflow occurred after considering the EDZs' effects. The proposed solution can provide an efficient method to evaluate the water inflow into the deeply buried symmetrical subsea tunnels with EDZs. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
9. Experimental Study on Shield-Receiving Steel Sleeve Sealing Performance and Filler Pressure Regulation.
- Author
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Qi, Jiarui, Pan, Yiheng, and Zhang, Jinfeng
- Subjects
TUNNEL design & construction ,TUNNELS ,STEEL ,SUBWAY tunnels ,PRESSURE control ,TIME pressure - Abstract
Pressure balance control between steel sleeve fillings and stratum is the key to ensuring project safety in the receiving construction of subway shield tunnels. Here, to realize the active regulation of the filing pressure in the steel sleeve, this study first improves the fixed cover of a conventional steel sleeve to a piston cover that can slide freely along the longitudinal direction of the sleeve and puts forward the corresponding methods for hydraulic pressure regulation and mechanical pressure regulation. The pressure-holding sealing performance of a new steel sleeve structure was tested, and a hydraulic pressure regulation method and a mechanical pressure regulation method were proposed. Finally, an effective path to proactive filler pressure regulation in the steel sleeve was explored. By improving the structure scheme of the steel sleeve, A steel sleeve model was designed at a 1:5 proportion, following the shield receiving steel sleeve structures and their sizes in practical tunneling. The model test was performed for several processes of active control of filler pressure, including pressurization by injection, decompression by discharge, machinal pressurization in low pressure, machinal pressurization in high pressure, and machinal decompression. The laws of filler pressure variation with hydraulic pressure and machinal thrust, the reactive force of hydraulic jack, and stress of steel sleeve were researched. The results revealed that the maximum stress of the new steel sleeve structure was 14.5 MPa under an elastic stress state, and the circumferential stress was always eight times the longitudinal stress. The new steel sleeve structure shows controllable pressure-holding sealing performance. The hydraulic pressure decrease appears as a slow linear trend of about 0.1% of the initial pressure per min after 1 min of pressure holding. The variation in the filler pressure at the central position of the steel sleeve is 16~24% greater than that at the periphery. Both hydraulic pressure regulation and mechanical pressure regulation could achieve controllable proactive regulation effects on a steel sleeve's filler pressure. The proposed new shield-receiving steel sleeve structure and the study results about its sealing performance and filler pressure regulation will promote the shield-receiving technology to be more controllable and safer. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
10. Prediction and evaluation of combination pharmacotherapy using natural language processing, machine learning and patient electronic health records
- Author
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Ding, Pingjian, Pan, Yiheng, Wang, Quanqiu, and Xu, Rong
- Published
- 2022
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11. Fabrication of Mechanically Strong Silica Aerogels with the Thermally Induced Phase Separation (TIPS) Method of Poly(methyl methacrylate).
- Author
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Ma, Hainan, Wang, Baomin, Qi, Jiarui, Pan, Yiheng, and Chen, Chao
- Subjects
PHASE separation ,AEROGELS ,SILICA ,FLEXURAL strength ,COMPRESSIVE strength ,METHYL methacrylate - Abstract
Constructing and maintaining a three-dimensional network structure with high porosity is critical to the preparation of silica aerogel materials because this structure provides excellent properties. However, due to the pearl-necklace-like structure and narrow interparticle necks, aerogels have poor mechanical strength and a brittle nature. Developing and designing lightweight silica aerogels with distinct mechanical properties is significant to extend their practical applications. In this work, thermally induced phase separation (TIPS) of poly(methyl methacrylate) (PMMA) from a mixture of ethanol and water was used to strengthen the skeletal network of aerogels. Strong and lightweight PMMA-modified silica aerogels were synthesized via the TIPS method and supercritically dried with carbon dioxide. The cloud point temperature of PMMA solutions, physical characteristics, morphological properties, microstructure, thermal conductivities, and mechanical properties were investigated. The resultant composited aerogels not only exhibit a homogenous mesoporous structure but also achieve a significant improvement in mechanical properties. The addition of PMMA increased the flexural strength and compressive strength by as much as 120% and 1400%, respectively, with the greatest amount of PMMA (M
w = 35,000 g/mole), while the density just increased by 28%. Overall, this research suggests that the TIPS method has great efficiency in reinforcing silica aerogels with less sacrifice of low density and large porosity. [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
12. CXCL8 Promotes Glioma Progression By Activating The JAK/STAT1/HIF-1α/Snail Signaling Axis
- Author
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Chen, Zhiming, Mou, Lei, Pan, Yiheng, Feng, Chi, Zhang, Jingjing, and Li, Junjun
- Subjects
musculoskeletal diseases ,glioma ,CXCL8 ,progression ,JAK/STAT1/HIF-1α/Snail ,Original Research - Abstract
Background Upregulation of CXCL8 (C-X-C motif ligand 8) in tumor cells has been reported in several types of cancer, and it correlates with a poor prognosis. However, the role of CXCL8 in glioma progression remains unknown. Materials and methods In this study, we examined CXCL8 expression levels in human glioma cell lines and in sixteen human gliomas with different grades. The molecular role of CXCL8 in glioma cells was investigated using quantitative polymerase chain reaction (qRT-PCR) assays, Western blotting, CCK-8 assays, EdU assays, colony formation assays, Transwell migration and invasion assays. Results We found that high expression levels of CXCL8 were positively associated with progression and poor prognosis in human glioma. Mechanistically, CXCL8 promoted the epithelial-mesenchymal transition (EMT) in glioma cells by activating the JAK/STAT1/HIF-1α/Snail signaling pathway. Conclusion Taken together, our data provide a plausible mechanism for CXCL8-modulated glioma progression, which suggests that CXCL8 may represent a potential therapeutic target in the prevention and treatment of gliomas.
- Published
- 2019
13. CXCL8 Promotes Glioma Progression by Activating the JAK/STAT1/HIF-1α/Snail Signaling Axis [Retraction].
- Author
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Chen, Zhiming, Mou, Lei, Pan, Yiheng, Feng, Chi, Zhang, Jingjing, and Li, Junjun
- Subjects
GLIOMAS - Abstract
Figure 4A, U-251MG, LV-Vector, N-cadherin, appears to have been duplicated with regions from the image used in Figure 4A, U-251MG, LV-Vector, Vimentin. Figure 4A, U-87MG, CXCL8-shRNA, DAPI/CXCL8, appears to have been duplicated with regions from the image used in Figure 4A, U-251MG, LV-Vector, Vimentin. [Extracted from the article]
- Published
- 2023
- Full Text
- View/download PDF
14. Suicidal ideation and suicide attempt following ketamine prescription in patients with treatment-resistant depression: a nation-wide cohort study.
- Author
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Pan Y, Gorenflo MP, Davis PB, Kaelber DC, De Luca S, and Xu R
- Abstract
Ketamine, including esketamine, is an effective treatment for patients with treatment-resistant depression (TRD); however, its long-term efficacy in real-world populations remains poorly characterized. This is a retrospective cohort study using TriNetX US Collaborative Network, a platform aggregating electronic health records (EHRs) data from 93 million patients from 56 health care organizations in the US, and the study population includes 321,367 patients with a diagnosis of TRD who were prescribed relevant treatment in their EHRs. The prescription of ketamine (including esketamine) was associated with significant decreased risk of suicidal ideation compared to prescription of other common antidepressants: HR = 0.65 (95% CI: 0.53 - 0.81) at 1 day - 7 days, 0.78 (95% CI: 0.66 - 0.92) at 1 day - 30 days, 0.81 (95% CI: 0.70 - 0.92) at 1 day - 90 days, 0.82 (95% CI: 0.72 - 0.92) at 1 day - 180 days, and 0.83 (95% CI: 0.74 - 0.93) at 1 day - 270 days. This trend was especially robust among adults over 24 years of age, males, and White patients with TRD. No significant difference was observed for suicide attempts, except significantly increased risk for adolescents (aged 10-24) at 1 day - 30 days with HR = 2.22 (95% CI: 1.01-4.87). This study provides real-world evidence that ketamine has long-term benefits in mitigating suicidal ideation in patients with treatment-resistant depression. Future work should focus on optimizing dosage regimens for ketamine, understanding the mechanism, and the difference in various demographic subpopulations., Competing Interests: Conflict of Interest Disclosures: The authors have no conflict of interest.
- Published
- 2023
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- View/download PDF
15. A knowledge graph-based disease-gene prediction system using multi-relational graph convolution networks.
- Author
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Gao Z, Pan Y, Ding P, and Xu R
- Subjects
- Humans, Genotype, Databases, Factual, Knowledge, Pattern Recognition, Automated, Benchmarking
- Abstract
Identifying disease-gene associations is important for understanding molecule mechanisms of diseases, finding diagnostic markers and therapeutic targets. Many computational methods have been proposed to predict disease related genes by integrating different biological databases into heterogeneous networks. However, it remains a challenging task to leverage heterogeneous topological and semantic information from multi-source biological data to enhance disease-gene prediction. In this study, we propose a knowledge graph-based disease-gene prediction system (GenePredict-KG) by modeling semantic relations extracted from various genotypic and phenotypic databases. We first constructed a knowledge graph that comprised 2,292,609 associations between 73,358 entities for 14 types of phenotypic and genotypic relations and 7 entity types. We developed a knowledge graph embedding model to learn low-dimensional representations of entities and relations, and utilized these embeddings to infer new disease-gene interactions. We compared GenePredict-KG with several state-of-the-art models using multiple evaluation metrics. GenePredict-KG achieved high performances [AUROC (the area under receiver operating characteristic) = 0.978, AUPR (the area under precision-recall) = 0.343 and MRR (the mean reciprocal rank) = 0.244], outperforming other state-of-art methods., (©2022 AMIA - All rights reserved.)
- Published
- 2023
16. Mesh-preservation approach to treatment of mesh infection after large incisional ventral hernia repair-how I do it.
- Author
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Yang X, Aihemaiti M, Zhang H, Jiang L, Zhang G, Qin M, Pan Y, Wen X, Chan FSY, and Fan JKM
- Abstract
Mesh infection after large incisional ventral hernia repair is a clinical dilemma in abdominal wall hernia surgery. It is believed foreign material should be removed but it causes secondary trauma to the abdominal wall tissue and might be associated with a higher risk of complications. Currently, there is no consensus on mesh-preservation treatment in cases of mesh infection after hernia repair in general. Herein we present the case of a 27-year-old male who recovered well from mesh infection after large incisional ventral hernia repair by mesh-preservation approach. The path to success is choice of material of prosthetic mesh; surgical approach of hernia repair, sufficient wound irrigation and drainage, and acquiring sterility of the mesh surface by wound care techniques such as local iodophor packing and vacuum sealing drainage. Clinical cohorts are needed to verify the feasibility of mesh-preservation treatment of mesh infection after large incisional hernia repair., Competing Interests: Conflicts of Interest: The authors have no conflicts of interest to declare., (2019 Annals of Translational Medicine. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
17. Using Machine Learning to Predict Hyperchloremia in Critically Ill Patients.
- Author
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Yeh P, Pan Y, Sanchez-Pinto LN, and Luo Y
- Abstract
Elevated serum chloride levels (hyperchloremia) and the administration of intravenous (IV) fluids with high chloride content have both been associated with increased morbidity and mortality in certain subgroups of critically ill patients, such as those with sepsis. Here, we demonstrate this association in a general intensive care unit (ICU) population using data from the Medical Information Mart for Intensive Care III (MIMIC-III) database and propose the use of supervised learning to predict hyperchloremia in critically ill patients. Clinical variables from records of the first 24h of adult ICU stays were represented as features for four predictive supervised learning classifiers. The best performing model was able to predict second-day hyperchloremia with an AUC of 0.80 and a ratio of 5 false alerts for every true alert, which is a clinically-actionable rate. Our results suggest that clinicians can be effectively alerted to patients at risk of developing hyperchloremia, providing an opportunity to mitigate this risk and potentially improve outcomes.
- Published
- 2019
- Full Text
- View/download PDF
18. Deep Generative Classifiers for Thoracic Disease Diagnosis with Chest X-ray Images.
- Author
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Mao C, Pan Y, Zeng Z, Yao L, and Luo Y
- Abstract
Thoracic diseases are very serious health problems that plague a large number of people. Chest X-ray is currently one of the most popular methods to diagnose thoracic diseases, playing an important role in the healthcare workflow. However, reading the chest X-ray images and giving an accurate diagnosis remain challenging tasks for expert radiologists. With the success of deep learning in computer vision, a growing number of deep neural network architectures were applied to chest X-ray image classification. However, most of the previous deep neural network classifiers were based on deterministic architectures which are usually very noise-sensitive and are likely to aggravate the overfitting issue. In this paper, to make a deep architecture more robust to noise and to reduce overfitting, we propose using deep generative classifiers to automatically diagnose thorax diseases from the chest X-ray images. Unlike the traditional deterministic classifier, a deep generative classifier has a distribution middle layer in the deep neural network. A sampling layer then draws a random sample from the distribution layer and input it to the following layer for classification. The classifier is generative because the class label is generated from samples of a related distribution. Through training the model with a certain amount of randomness, the deep generative classifiers are expected to be robust to noise and can reduce overfitting and then achieve good performances. We implemented our deep generative classifiers based on a number of well-known deterministic neural network architectures, and tested our models on the chest X-ray14 dataset. The results demonstrated the superiority of deep generative classifiers compared with the corresponding deep deterministic classifiers.
- Published
- 2018
- Full Text
- View/download PDF
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