23 results on '"Pérez-García, Vicente"'
Search Results
2. The GPI-anchor biosynthesis pathway is critical for syncytiotrophoblast differentiation and placental development
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Álvarez-Sánchez, Andrea, Grinat, Johanna, Doria-Borrell, Paula, Mellado-López, Maravillas, Pedrera-Alcócer, Érica, Malenchini, Marta, Meseguer, Salvador, Hemberger, Myriam, and Pérez-García, Vicente
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- 2024
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3. PI3Kβ-regulated β-catenin mediates EZH2 removal from promoters controlling primed human ESC stemness and primitive streak gene expression
- Author
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Yadav, Sudhanshu, Garrido, Antonio, Hernández, M. Carmen, Oliveros, Juan C., Pérez-García, Vicente, Fraga, Mario F., and Carrera, Ana C.
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- 2022
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4. Mapping the expression of transient receptor potential channels across murine placental development
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De Clercq, Katrien, Pérez-García, Vicente, Van Bree, Rieta, Pollastro, Federica, Peeraer, Karen, Voets, Thomas, and Vriens, Joris
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- 2021
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5. Drop-In Replacement of R134a in a Household Refrigerator with Low-GWP Refrigerants R513A, R516A, and R1234ze(E).
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Belman-Flores, Juan M., Heredia-Aricapa, Yonathan, García-Pabón, Juan J., Pérez-García, Vicente, and Pérez-Reguera, César G.
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REFRIGERATORS ,GLOBAL warming ,HOUSEHOLDS ,REFRIGERANTS ,ENERGY consumption - Abstract
This study proposes the experimental evaluation of alternative refrigerants with low global warming potentials (GWPs) such as R1234ze(E), R513A, and the mixture R516A as a drop-in replacement for R134a in a domestic refrigerator with a volumetric capacity of 513 L. Initially, the optimal charge for each refrigerant was defined based on the minimum energy consumption of the refrigerator, then the thermal and energy performance of the refrigerator was evaluated. Finally, a total equivalent warming impact analysis (TEWI) was performed. The main results indicated that the optimal charge of the alternative refrigerants was below that corresponding to R134a (105 g), of which R516A (86 g) presented the greatest charge reduction. Regarding the average temperature of the refrigerator compartments, very adequate thermal conditions were observed; thus, the alternative refrigerants showed very similar conditions to R134a. For the coefficient of performance (COP) and considering R134a as a reference, it was observed that R513A presented the greatest reduction of around 28%, while R1234ze(E) showed an increase of 13% in relation to R134a. Finally, the TEWI analysis showed R1234ze(E) as the refrigerant with the least impact. [ABSTRACT FROM AUTHOR]
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- 2023
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6. A Thermo-Catalytic Pyrolysis of Polystyrene Waste Review: A Systematic, Statistical, and Bibliometric Approach.
- Author
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Gonzalez-Aguilar, Arantxa M., Pérez-García, Vicente, and Riesco-Ávila, José M.
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PYROLYSIS , *LIQUID fuels , *BIBLIOMETRICS , *WASTE products , *WASTE tires , *STRENGTH of materials , *CHEMICAL industry - Abstract
Global polystyrene (PS) production has been influenced by the lightness and heat resistance this material offers in different applications, such as construction and packaging. However, population growth and the lack of PS recycling lead to a large waste generation, affecting the environment. Pyrolysis has been recognized as an effective recycling method, converting PS waste into valuable products in the chemical industry. The present work addresses a systematic, bibliometric, and statistical analysis of results carried out from 2015 to 2022, making an extensive critique of the most influential operation parameters in the thermo-catalytic pyrolysis of PS and its waste. The systematic study showed that the conversion of PS into a liquid with high aromatic content (84.75% of styrene) can be achieved by pyrolysis. Discussion of PS as fuel is described compared to commercial fuels. In addition, PS favors the production of liquid fuel when subjected to co-pyrolysis with biomass, improving its properties such as viscosity and energy content. A statistical analysis of the data compilation was also discussed, evaluating the influence of temperature, reactor design, and catalysts on product yield. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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7. Multi-Objective Optimization of a Multilayer Wire-on-Tube Condenser: Case Study R134a, R600a, and R513A.
- Author
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Heredia-Aricapa, Yonathan, Belman-Flores, Juan M., Soria-Alcaraz, Jorge A., Pérez-García, Vicente, Elizalde-Blancas, Francisco, Alfaro-Ayala, Jorge A., and Ramírez-Minguela, José
- Subjects
EVOLUTIONARY algorithms ,PARTICLE swarm optimization ,FORCED convection ,HEAT transfer ,REFRIGERANTS - Abstract
This study presents the optimization of a multilayer wire-on-tube condenser exposed to forced convection, using the Optimized Multi-objective Particle Swarm Optimization (OMOPSO) algorithm. The maximization of the heat transfer and the minimization of the heat exchange area were defined as objective functions. In the optimization process, the variations of eight geometric parameters of the condenser were analyzed, and the Multi-objective Evolutionary Algorithm based on Decomposition (MOEAD), Non-dominated Sorting Genetic Algorithm-II (NSGAII), and OMOPSO algorithms were statistically explored. Furthermore, the condenser optimization analysis was extended to the use of alternative refrigerants to R134a such as R600a and R513A. Among the relevant results, it can be commented that the OMOPSO algorithm presented the best option from the statistical point of view compared to the other two algorithms. Thus, optimal designs for the wire-on-tube condenser were defined for three proposed study cases and for each refrigerant, providing an overview of compact designs. Likewise, the reduction of the condenser area was analyzed in more detail, presenting a maximum reduction of 15% for the use of R134a compared to for the current design. Finally, the crossflow condition was studied with respect to the current one, concluding in a greater heat transfer and a smaller heat exchange surface. [ABSTRACT FROM AUTHOR]
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- 2022
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8. CXCL12-Mediated Murine Neural Progenitor Cell Movement Requires PI3Kβ Activation
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Holgado, Borja L., Martínez-Muñoz, Laura, Sánchez-Alcañiz, Juan Antonio, Lucas, Pilar, Pérez-García, Vicente, Pérez, Gema, Rodríguez-Frade, José Miguel, Nieto, Marta, Marín, Óscar, Carrasco, Yolanda R., Carrera, Ana C., Álvarez-Dolado, Manuel, and Mellado, Mario
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- 2013
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9. Phosphoinositide 3-kinase beta controls replication factor C assembly and function
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Redondo-Muñoz, Javier, Rodríguez, María Josefa, Silió, Virginia, Pérez-García, Vicente, Valpuesta, José María, and Carrera, Ana C.
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- 2013
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10. Internal Heat Exchanger Influence in Operational Cost and Environmental Impact of an Experimental Installation Using Low GWP Refrigerant for HVAC Conditions.
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Méndez-Méndez, Dario, Pérez-García, Vicente, Belman-Flores, Juan M., Riesco-Ávila, José M., and Barroso-Maldonado, Juan M.
- Abstract
The use of an internal heat exchanger in vapor compression refrigeration systems of one stage is a common practice because it helps to increase the cooling capacity in the evaporator. Furthermore, the use of refrigerants with low global warming potential is becoming more frequent due to environmental regulations worldwide. Thus, this paper presents an evaluation of the improvement produced by the inclusion of an internal heat exchanger cycle (IHXC) in an experimental installation from the viewpoint of exergy, economic and environmental through to exergy, exergoeconomics, and Specific Life Cycle Climate Performance (SLCCP) studies. The tests were conducted using R1234ze(E) as a replacement alternative to R134a in three evaporating temperature conditions: 4 °C, 9 °C, and 14 °C. Comparisons were made considering R134a in BRC mode versus R1234ze(E) in BRC and IHXC modes. Results show that a lower environmental impact is produced by an evaporating temperature of 14 °C with a reduction in SLCCP of 13.3% using IHXC and R1234ze(E). Moreover, the highest increase in exergy efficiency was observed for an evaporating temperature of 4 °C, with this increase being 9%, while the lowest increase in the total cost rate was observed for the same evaporating temperature, being 12.3% and 21.2% for BRC and IHXC modes using R1234ze(E), respectively. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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11. A promoter DNA demethylation landscape of human hematopoietic differentiation
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Calvanese, Vincenzo, Fernández, Agustín F., Urdinguio, Rocío G., Suárez-Alvarez, Beatriz, Mangas, Cristina, Pérez-García, Vicente, Bueno, Clara, Montes, Rosa, Ramos-Mejía, Verónica, Martínez-Camblor, Pablo, Ferrero, Cecilia, Assenov, Yassen, Bock, Christoph, Menendez, Pablo, Carrera, Ana Clara, Lopez-Larrea, Carlos, and Fraga, Mario F.
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- 2012
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12. Transient behavior of CO 2 in the internal heat exchanger during the start-up of the transcritical refrigeration system.
- Author
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Ituna-Yudonago, Jean F., Belman-Flores, Juan Manuel, Elizalde-Blancas, Francisco, Serrano-Arellano, Juan, Pérez-García, Vicente, and Gutiérrez-León, Diana G.
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CARBON dioxide ,HEAT exchangers ,REFRIGERATION & refrigerating machinery ,COMPUTATIONAL fluid dynamics ,FLUID dynamics - Abstract
Transient behavior of internal heat exchanger during start-up of transcritical refrigeration system is investigated in this article. The work is focused on the local transient analysis of CO2thermophysical properties, in order to see how these transient changes affect the heat transfer rate and the effectiveness of internal heat exchanger, as well as the coefficient of performance during the start-up of the system. The study is conducted through a numerical simulation using the commercial computational fluid dynamics (CFD) software Ansys Fluent. Validation of numerical results is carried out by using seven different empirical correlations applied for the Nusselt number. It is observed that the thermophysical properties of the hot CO2stream experience large changes during the transient period. This instability is accompanied by a decrease in the heat transfer rate. Finally, the change in the internal heat exchanger effectiveness during the start-up results in a loss of about 12% of the coefficient of performance. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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13. Second Law Analysis of a Mobile Air Conditioning System with Internal Heat Exchanger Using Low GWP Refrigerants.
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Pérez-García, Vicente, Belman-Flores, Juan M., Rodríguez-Muñoz, José L., Rangel-Hernández, Víctor. H., and Gallegos-Muñoz, Armando
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SECOND law of thermodynamics , *AIR conditioning , *HEAT exchangers , *GLOBAL warming , *ENTROPY - Abstract
This paper investigates the results of a Second Law analysis applied to a mobile air conditioning system (MACs) integrated with an internal heat exchanger (IHX) by considering R152a, R1234yf and R1234ze as low global warming potential (GWP) refrigerants and establishing R134a as baseline. System simulation is performed considering the maximum value of entropy generated in the IHX. The maximum entropy production occurs at an effectiveness of 66% for both R152a and R134a, whereas for the cases of R1234yf and R1234ze occurs at 55%. Sub-cooling and superheating effects are evaluated for each one of the cases. It is also found that the sub-cooling effect shows the greatest impact on the cycle efficiency. The results also show the influence of isentropic efficiency on relative exergy destruction, resulting that the most affected components are the compressor and the condenser for all of the refrigerants studied herein. It is also found that the most efficient operation of the system resulted to be when using the R1234ze refrigerant. [ABSTRACT FROM AUTHOR]
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- 2017
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14. Phosphoinositide 3-Kinase Beta Protects Nuclear Envelope Integrity by Controlling RCC1 Localization and Ran Activity.
- Author
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Redondo-Muñoz, Javier, Pérez-García, Vicente, Rodríguez, María J., Valpuesta, José M., and Carrera, Ana C.
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CYTOSOL , *PROTEIN analysis , *CHROMOSOMES , *CHROMATIN , *PROTEIN binding - Abstract
The nuclear envelope (NE) forms a barrier between the nucleus and the cytosol that preserves genomic integrity. The nuclear lamina and nuclear pore complexes (NPCs) are NE components that regulate nuclear events through interaction with other proteins and DNA. Defects in the nuclear lamina are associated with the development of laminopathies. As cells depleted of phosphoinositide 3-kinase beta (PI3Kβ) showed an aberrant nuclear morphology, we studied the contribution of PI3Kβ to maintenance of NE integrity. pik3cb depletion reduced the nuclear membrane tension, triggered formation of areas of lipid bilayer/ lamina discontinuity, and impaired NPC assembly. We show that one mechanism for PI3Kβ regulation of NE/NPC integrity is its association with RCC1 (regulator of chromosome condensation 1), the activator of nuclear Ran GTPase. PI3Kβ controls RCC1 binding to chromatin and, in turn, Ran activation. These findings suggest that PI3Kβ regulates the nuclear envelope through upstream regulation of RCC1 and Ran. [ABSTRACT FROM AUTHOR]
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- 2015
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15. Cell Activation-Induced Phosphoinositide 3-Kinase Alpha/Beta Dimerization Regulates PTEN Activity.
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Pérez-García, Vicente, Redondo-Muñoz, Javier, Kumar, Amit, and Carrera, Ana C.
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PHOSPHOINOSITIDES , *PHOSPHATASES , *PHOSPHATIDYLINOSITOLS , *CELL cycle , *OLIGOMERIZATION - Abstract
The phosphoinositide 3-kinase (PI3K)/PTEN (phosphatase and tensin homolog) pathway is one of the central routes that enhances cell survival, division, and migration, and it is frequently deregulated in cancer. PI3K catalyzes formation of phosphatidylinositol 3,4,5-triphosphate [PI(3,4,5)P3] after cell activation; PTEN subsequently reduces these lipids to basal levels. Activation of the ubiquitous p110β isoform precedes that of p110β at several points during the cell cycle. We studied the potential connections between p110β and p110β activation, and we show that cell stimulation promotes p110β and p110β association, demonstrating oligomerization of PI3K catalytic subunits within cells. Cell stimulation also promoted PTEN incorporation into this complex, which was necessary for PTEN activation. Our results show that PI3Ks dimerize in vivo and that PI3K and PTEN activities modulate each other in a complex that controls cell PI(3,4,5)P3 levels. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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16. Quantification and phenotype of regulatory T cells in rheumatoid arthritis according to Disease Activity Score-28.
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Sempere-Ortells, José Miguel, Pérez-García, Vicente, Marín-Alberca, Gema, Peris-Pertusa, Alejandra, Benito, José Miguel, Marco, Francisco Manuel, Zubcoff, José Jacobo, and Navarro-Blasco, Francisco Javier
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T cells , *AUTOIMMUNE diseases , *INFLAMMATION , *RHEUMATOID arthritis , *IMMUNOGLOBULINS - Abstract
Here we studied and characterized different peripheral blood (PB) regulatory T cell (Treg) subsets in rheumatoid arthritis (RA) patients and tested the hypothesis that changes in these cells can be linked to the degree of inflammation and relapsing/remission periods. PB cells were examined from RA subjects ( n = 60) with different disease activity score-28 (DAS28) and from healthy controls ( n = 40). Frequencies of Treg subsets expressing characteristic membrane antigens, FoxP3 or intracellular cytokines were quantified by flow cytometry. We observed a decrease in the percentages of CD4+CD25high, CD4+CD25int, CD4+CD25int/highFoxP3+, CD4+CD38+, CD4+CD62L+, CD8+CD25highCD45RA+ and CD8+CD25intCD45RA+ T cells in PB of RA patients compared to healthy controls. In addition, we found increased percentages of cells expressing membrane/intracellular regulatory antigens such as OX40 (CD134), CD45RBlow or CTLA-4 (CD152), and a higher proportion of other T cell subsets including CD4+CTLA-4+, CD4+IL10+, CD4+CD25intIL10+, CD4+CD25int TGFβ+, CD4+CD25low TGFβ+ and CD8+CD28− . We show that most of these changes parallel the intensity of inflammation, with lowest or highest values in patients with moderately/very active disease compared to healthy controls and at times to patients with inactive RA. The balance between these cell subsets and their antigen expression would determine the inflammation levels and could thus be linked to the relapsing/remission periods of the disease. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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17. Perspectives on Consumer Habits with Domestic Refrigerators and Its Consequences for Energy Consumption: Case of Study in Guanajuato, Mexico.
- Author
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Belman-Flores, Juan M., Pardo-Cely, Diana, Elizalde-Blancas, Francisco, Gallegos-Muñoz, Armando, Pérez-García, Vicente, and Gómez-Martínez, Miguel A.
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ENERGY consumption ,REFRIGERATORS ,ENERGY conservation ,CONSUMER behavior ,FOOD supply - Abstract
This work presents the main behaviors shown in the habits of consumers of domestic refrigerators, which influences the energy consumption of this appliance. This study is based on a series of surveys answered by 200 consumers from four cities in the State of Guanajuato, Mexico. The questions were arranged with the aim of evaluating the general characteristics and usage habits such as refrigerator age, door opening frequency, damper position, load of food supplies, external and internal cleaning habits, and nearby heat sources, among other things. The randomly interviewed consumers were individuals between 20 and 60 years of age, who were interviewed using handmade surveys by experts in the field of refrigeration. In some cases, photographic evidence was gathered from the consumers' refrigerators to represent the typical usage habits. In general, the results show that better usage habits are necessary from an energy point of view. Most consumers agree with adopting best practices for using their refrigerator. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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18. The imprinted Igf2-Igf2r axis is critical for matching placental microvasculature expansion to fetal growth.
- Author
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Sandovici, Ionel, Georgopoulou, Aikaterini, Pérez-García, Vicente, Hufnagel, Antonia, López-Tello, Jorge, Lam, Brian Y.H., Schiefer, Samira N., Gaudreau, Chelsea, Santos, Fátima, Hoelle, Katharina, Yeo, Giles S.H., Burling, Keith, Reiterer, Moritz, Fowden, Abigail L., Burton, Graham J., Branco, Cristina M., Sferruzzi-Perri, Amanda N., and Constância, Miguel
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FETAL development , *PLACENTA , *FETUS , *NUTRITIONAL requirements , *ANGIOPOIETINS , *MORPHOGENESIS - Abstract
In all eutherian mammals, growth of the fetus is dependent upon a functional placenta, but whether and how the latter adapts to putative fetal signals is currently unknown. Here, we demonstrate, through fetal, endothelial, hematopoietic, and trophoblast-specific genetic manipulations in the mouse, that endothelial and fetus-derived IGF2 is required for the continuous expansion of the feto-placental microvasculature in late pregnancy. The angiocrine effects of IGF2 on placental microvasculature expansion are mediated, in part, through IGF2R and angiopoietin-Tie2/TEK signaling. Additionally, IGF2 exerts IGF2R-ERK1/2-dependent pro-proliferative and angiogenic effects on primary feto-placental endothelial cells ex vivo. Endothelial and fetus-derived IGF2 also plays an important role in trophoblast morphogenesis, acting through Gcm1 and Synb. Thus, our study reveals a direct role for the imprinted Igf2-Igf2r axis on matching placental development to fetal growth and establishes the principle that hormone-like signals from the fetus play important roles in controlling placental microvasculature and trophoblast morphogenesis. [Display omitted] • Fetus-derived IGF2 controls placental microvasculature expansion in late gestation • The angiocrine effects of IGF2 are mediated via angiopoietins/Tek and IGF2R-ERK1/2 • Fetus-derived IGF2 also regulates trophoblast morphogenesis via Gcm1 and Synb • The imprinted Igf2-Igf2r axis matches placental development to fetal demand The fetal signals that coordinate placental development to the nutritional needs of the growing fetus are currently unknown. Using genetic manipulations in the mouse, Sandovici et al. show that IGF2 produced by the fetus is a key signal that controls the expansion of the placental vascular tree in late pregnancy. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
19. CRISPR Activation in Mouse Trophoblast Stem Cells.
- Author
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Pérez-García I and Pérez-García V
- Subjects
- Pregnancy, Female, Animals, Mice, Trophoblasts, Placentation physiology, Cell Differentiation genetics, Stem Cells, Placenta, RNA, Guide, CRISPR-Cas Systems
- Abstract
The placenta is a vital organ that regulates nutrient supply to the developing embryo during gestation. In mice, the placenta is composed of trophoblast lineage and mesodermal derivatives, which merge through the chorioallantoic fusion process in a critical event for the progression of placenta development. The trophoblast lineage is derived from self-renewing, multipotent cells known as mouse trophoblast stem cells (mTSCs). These cells are a valuable tool that allows scientists to comprehend the signals regulating major placental cell types' self-renewal and differentiation capacity. Recent advances in CRISPR-Cas9 genome editing applied in mTSCs have provided novel insights into the molecular networks involved in placentation. Here, we present a comprehensive CRISPR activation (CRISPRa) protocol based on the CRISPR/gRNA-directed synergistic activation mediator (SAM) method to overexpress specific target genes in mTSCs., (© 2024. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2024
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20. Generation of Knockout Mouse Trophoblast Stem Cells by CRISPR/Cas9.
- Author
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Doria-Borrell P, Moya-Navamuel M, Hemberger M, and Pérez-García V
- Subjects
- Pregnancy, Female, Animals, Mice, Mice, Knockout, Trophoblasts, Cell Differentiation genetics, Stem Cells, Mammals, Placenta, CRISPR-Cas Systems
- Abstract
The placenta is the organ that dictates the reproductive outcome of mammalian pregnancy by supplying nutrients and oxygen to the developing fetus to sustain its normal growth. During early mammalian development, trophoblast cells are the earliest cell type to differentiate with multipotent capacity to generate the trophoblast components of the placenta. The isolation and use of mouse trophoblast stem cells (mTSCs) to model in vitro trophoblast differentiation, in combination with CRISPR/Cas9 genome editing technology, has provided tremendous insight into the molecular mechanisms governing early mouse placentation. By knocking out a specific gene of interest in mTSCs, researchers are shedding light onto the molecular pathways involved in normal placental development and pregnancy disorders associated with abnormal placentation. In this chapter, we provide a detailed protocol for the genetic modification of mTSCs by using CRISPR/Cas9 genome editing system., (© 2024. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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21. Fetal and trophoblast PI3K p110α have distinct roles in regulating resource supply to the growing fetus in mice.
- Author
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López-Tello J, Pérez-García V, Khaira J, Kusinski LC, Cooper WN, Andreani A, Grant I, Fernández de Liger E, Lam BY, Hemberger M, Sandovici I, Constancia M, and Sferruzzi-Perri AN
- Subjects
- Animals, Female, Fetus, Mice, Pregnancy, Signal Transduction, Class I Phosphatidylinositol 3-Kinases metabolism, Embryonic Stem Cells enzymology, Energy Metabolism, Fetal Development, Placentation, Trophoblasts enzymology
- Abstract
Studies suggest that placental nutrient supply adapts according to fetal demands. However, signaling events underlying placental adaptations remain unknown. Here we demonstrate that phosphoinositide 3-kinase p110α in the fetus and the trophoblast interplay to regulate placental nutrient supply and fetal growth. Complete loss of fetal p110α caused embryonic death, whilst heterozygous loss resulted in fetal growth restriction and impaired placental formation and nutrient transport. Loss of trophoblast p110α resulted in viable fetuses, abnormal placental development and a failure of the placenta to transport sufficient nutrients to match fetal demands for growth. Using RNA-seq we identified genes downstream of p110α in the trophoblast that are important in adapting placental phenotype. Using CRISPR/Cas9 we showed loss of p110α differentially affects gene expression in trophoblast and embryonic stem cells. Our findings reveal important, but distinct roles for p110α in the different compartments of the conceptus, which control fetal resource acquisition and growth., Competing Interests: JL, VP, JK, LK, WC, AA, IG, EF, BL, MH, IS, MC, AS No competing interests declared, (© 2019, López-Tello et al.)
- Published
- 2019
- Full Text
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22. Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
- Author
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Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, Woodland H, Amaral FMR, Szeto GL, Fuchs O, Schüssler-Fiorenza Rose SM, Sharma S, Schwartz U, Bausela XB, Szymkiewicz M, Maroulis V, Salykin A, Barra CM, Kruth CD, Bongio NJ, Mathur V, Todoric RD, Rubin UE, Malatras A, Fulp CT, Galindo JA, Motiejunaite R, Jüschke C, Dishuck PC, Lahl K, Jafari M, Aibar S, Zaravinos A, Steenhuizen LH, Allison LR, Gamallo P, de Andres Segura F, Dae Devlin T, Pérez-García V, and Ma'ayan A
- Abstract
Gene expression data are accumulating exponentially in public repositories. Reanalysis and integration of themed collections from these studies may provide new insights, but requires further human curation. Here we report a crowdsourcing project to annotate and reanalyse a large number of gene expression profiles from Gene Expression Omnibus (GEO). Through a massive open online course on Coursera, over 70 participants from over 25 countries identify and annotate 2,460 single-gene perturbation signatures, 839 disease versus normal signatures, and 906 drug perturbation signatures. All these signatures are unique and are manually validated for quality. Global analysis of these signatures confirms known associations and identifies novel associations between genes, diseases and drugs. The manually curated signatures are used as a training set to develop classifiers for extracting similar signatures from the entire GEO repository. We develop a web portal to serve these signatures for query, download and visualization.
- Published
- 2016
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- View/download PDF
23. Phosphoinositide 3-kinase p85beta regulates invadopodium formation.
- Author
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Cariaga-Martínez AE, Cortés I, García E, Pérez-García V, Pajares MJ, Idoate MA, Redondo-Muñóz J, Antón IM, and Carrera AC
- Abstract
The acquisition of invasiveness is characteristic of tumor progression. Numerous genetic changes are associated with metastasis, but the mechanism by which a cell becomes invasive remains unclear. Expression of p85β, a regulatory subunit of phosphoinositide-3-kinase, markedly increases in advanced carcinoma, but its mode of action is unknown. We postulated that p85β might facilitate cell invasion. We show that p85β localized at cell adhesions in complex with focal adhesion kinase and enhanced stability and maturation of cell adhesions. In addition, p85β induced development at cell adhesions of an F-actin core that extended several microns into the cell z-axis resembling the skeleton of invadopodia. p85β lead to F-actin polymerization at cell adhesions by recruiting active Cdc42/Rac at these structures. In accordance with p85β function in invadopodium-like formation, p85β levels increased in metastatic melanoma and p85β depletion reduced invadopodium formation and invasion. These results show that p85β enhances invasion by inducing cell adhesion development into invadopodia-like structures explaining the metastatic potential of tumors with increased p85β levels., (© 2014. Published by The Company of Biologists Ltd.)
- Published
- 2014
- Full Text
- View/download PDF
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