37 results on '"Nir Sharon"'
Search Results
2. Geometric Hermite interpolation in Rn by refinements
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Hofit, Ben-Zion Vardi, Nira, Dyn, and Nir, Sharon
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- 2023
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3. Mirror, mirror on the wall, will the patient show at all?
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Nir, Sharon V.
- Abstract
This article discusses the challenges faced by Ardent Health, a healthcare provider, in dealing with increased patient no-show rates after the COVID-19 pandemic. Patient no-shows limit access to timely medical attention and negatively impact provider revenue. To address this issue, Ardent implemented a multifaceted approach, including automated patient appointment reminders, an online patient portal, digital check-in functionality, and proactive patient outreach. Ardent also adopted Epic's predictive analytics features to identify patients with a high likelihood of no-shows and proactively schedule additional patients in those slots. The article emphasizes the importance of data evaluation, provider consent, and standardized processes in successfully implementing a no-show predictive model. [Extracted from the article]
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- 2024
4. The generalized method of moments for multi-reference alignment
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João M. Pereira, Nir Sharon, and Asaf Abas
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Signal Processing (eess.SP) ,Computer Science::Sound ,Computer Science::Computer Vision and Pattern Recognition ,Signal Processing ,FOS: Electrical engineering, electronic engineering, information engineering ,Electrical and Electronic Engineering ,Electrical Engineering and Systems Science - Signal Processing - Abstract
This paper studies the application of the generalized method of moments (GMM) to multi-reference alignment (MRA): the problem of estimating a signal from its circularly-translated and noisy copies. We begin by proving that the GMM estimator maintains its asymptotic optimality for statistical models with group symmetry, including MRA. Then, we conduct a comprehensive numerical study and show that the GMM substantially outperforms the classical method of moments, whose application to MRA has been studied thoroughly in the literature. We also formulate the GMM to estimate a three-dimensional molecular structure using cryo-electron microscopy and present numerical results on simulated data.
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- 2021
5. Pyramid Transform of Manifold Data via Subdivision Operators
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Wael Mattar and Nir Sharon
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Computational Mathematics ,Applied Mathematics ,General Mathematics ,FOS: Mathematics ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Numerical Analysis (math.NA) ,Mathematics - Numerical Analysis ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
Multiscale transforms have become a key ingredient in many data processing tasks. With technological development we observe a growing demand for methods to cope with nonlinear data structures such as manifold values. In this paper we propose a multiscale approach for analyzing manifold-valued data using a pyramid transform. The transform uses a unique class of downsampling operators that enable a noninterpolating subdivision schemes as upsampling operators. We describe this construction in detail and present its analytical properties, including stability and coefficient decay. Next, we numerically demonstrate the results and show the application of our method to denoising and anomaly detection.
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- 2021
6. Differences between human and mouse embryonic stem cells
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Ginis, Irene, Luo, Yongquan, Miura, Takumi, Thies, Scott, Brandenberger, Ralph, Gerecht-Nir, Sharon, Amit, Michal, Hoke, Ahmet, Carpenter, Melissa K., Itskovitz-Eldor, Joseph, and Raoa, Mahendra S.
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Stem cells -- Research ,Biological sciences - Abstract
We compared gene expression profiles of mouse and human ES cells by immunocytochemistry, RT-PCR, and membrane-based focused eDNA array analysis. Several markers that in concert could distinguish undifferentiated ES cells from their differentiated progeny were identified. These included known markers such as SSEA antigens, OCT3/4, SOX-2, REX-1 and TERT, as well as additional markers such as UTF-1, TRF1, TRF2, connexin43, and connexin45, FGFR-4, ABCG-2, and Glut-1. A set of negative markers that confirm the absence of differentiation was also developed. These include genes characteristic of trophoectoderm, markers of germ layers, and of more specialized progenitor cells. While the expression of many of the markers was similar in mouse and human cells, significant differences were found in the expression of vimentin, [beta]-III tubulin, alpha-fetoprotein, eomesodermin, HEB, ARNT, and FoxD3 as well as in the expression of the LIF receptor complex LIFR/IL6ST (gp130). Profound differences in cell cycle regulation, control of apoptosis, and cytokine expression were uncovered using focused microarrays. The profile of gene expression observed in H1 cells was similar to that of two other human ES cell lines tested (line I-6 and clonal line-H9.2) and to feeder-free subclones of H1, H7, and H9, indicating that the observed differences between human and mouse ES cells were species-specific rather than arising from differences in culture conditions. Keywords: Embryonic stem cells; Human; Mouse; Markers; RT-PCR; eDNA microarray; Leukemia inhibitory factor; Apoptosis; Cell cycle; Cytokines
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- 2004
7. Molecular analysis of cardiomyocytes derived from human embryonic stem cells
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Segev, Hanna, Kenyagin-Karsenti, Dorit, Fishman, Bettina, Gerecht-Nir, Sharon, Ziskind, Anna, Amit, Michal, Coleman, Raymond, and Itskovitz-Eldor, Joseph
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- 2005
8. Functional Properties of Human Embryonic Stem Cell-Derived Cardiomyocytes
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DOLNIKOV, KATYA, SHILKRUT, MARK, ZEEVI-LEVIN, NAAMA, DANON, ASAF, GERECHT-NIR, SHARON, ITSKOVITZ-ELDOR, JOSEPH, and BINAH, OFER
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- 2005
9. Cell therapy using human embryonic stem cells
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Gerecht-Nir, Sharon and Itskovitz-Eldor, Joseph
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- 2004
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10. The promise of human embryonic stem cells
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Gerecht-Nir, Sharon and Itskovitz-Eldor, Joseph
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- 2004
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11. Human embryonic stem cells: A potential source for cellular therapy
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Gerecht-Nir, Sharon and Itskovitz-Eldor, Joseph
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- 2004
12. Human Embryonic Stem Cells as an In Vitro Model for Human Vascular Development and the Induction of Vascular Differentiation
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Gerecht-Nir, Sharon, Ziskind, Anna, Cohen, Smadar, and Itskovitz-Eldor, Joseph
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- 2003
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13. Multireference Alignment is Easier with an Aperiodic Translation Distribution
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Nir Sharon, Tamir Bendory, Amit Singer, João M. Pereira, William Leeb, and Emmanuel Abbe
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FOS: Computer and information sciences ,Physics ,Uniform distribution (continuous) ,Noise measurement ,Information Theory (cs.IT) ,Computer Science - Information Theory ,Mathematical analysis ,Order (ring theory) ,020206 networking & telecommunications ,02 engineering and technology ,Library and Information Sciences ,Noise (electronics) ,Computer Science Applications ,symbols.namesake ,Signal-to-noise ratio (imaging) ,Gaussian noise ,Aperiodic graph ,0202 electrical engineering, electronic engineering, information engineering ,symbols ,Connection (algebraic framework) ,Information Systems - Abstract
In the multireference alignment model, a signal is observed by the action of a random circular translation and the addition of Gaussian noise. The goal is to recover the signal’s orbit by accessing multiple independent observations. Of particular interest is the sample complexity, i.e., the number of observations/samples needed in terms of the signal-to-noise ratio (SNR) (the signal energy divided by the noise variance) in order to drive the mean-square error to zero. Previous work showed that if the translations are drawn from the uniform distribution, then, in the low SNR regime, the sample complexity of the problem scales as $\omega (1/ \mathrm {SNR}^{3})$ . In this paper, using a generalization of the Chapman–Robbins bound for orbits and expansions of the $\chi ^{2}$ divergence at low SNR, we show that in the same regime the sample complexity for any aperiodic translation distribution scales as $\omega (1/ \mathrm {SNR}^{2})$ . This rate is achieved by a simple spectral algorithm. We propose two additional algorithms based on non-convex optimization and expectation–maximization. We also draw a connection between the multireference alignment problem and the spiked covariance model.
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- 2017
14. Mirror, Mirror on the Wall, Will the Patient Show at All?
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Nir, Sharon V.
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PATIENT portals ,BEHAVIOR modification ,MIRRORS ,PREDICTION models - Abstract
Ardent Health (30 hospitals in six states), like most providers, faced a significant rise in patient no-show rates following the pandemic. It developed the usual strategies to address the problem, including: • Improved automated reminders that included patient-friendly cancellation/rescheduling functions; • New patient portal that included self-scheduling functions; • Online registration/check-in functions to streamline arrival processes; and • Telephone reminders the day before a scheduled appointment. And, like most providers implementing these strategies, the results were disappointing, with no-show rates remaining at 7% to 18%, depending on specialty. With the system's decision to commit the entire organization to a single EHR platform (Epic), Ardent was able to explore a new feature of the software: advanced predictive analytics. Epic's noshow predictive model is a "black-box" algorithm using each patient's appointment history and characteristics to calculate the no-show probability of an appointment. Next to each appointment, schedulers see an option to run the analysis. The probability rating determines the next appropriate action, such as telephone reminders and other efforts to modify patient behavior. Ardent took the predictive analytics a step further, and shifted its focus from behavior modification to outcome-improvement. It used the tool to determine how and when to "overbook" the schedule, relying on a higher probability of abandoned time slots. Previously, overbooking was used in a less-focused manner, resulting in both missed opportunities to refill slots and creating overcrowding situations when everyone shows up as scheduled. Ardent implemented the new strategy, and its internal analysis has shown that overbooking guided by Epic's predicted no-show results were 3.5 times more accurate than its previous "overbooking" routine in which add-on patients were scheduled into random slots. [ABSTRACT FROM AUTHOR]
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- 2023
15. Doing more with less amid the Great Resignation: USING DATA TO BOOST PATIENT ACCESS WITH FEWER PROVIDER AVAILABLE HOURS.
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Nir, Sharon V.
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The article discusses how data were used by medical practices to bolster patient access despite fewer provider available hours during the Great Resignation trend in the U.S. by citing the case of Lovelace Medical Group (LMG), a New Mexico division of Ardent Health Services. Also cited are LMG's use of Epic electronic health record (EHR) and automation of its third-next-available appointment (TNAA) report.
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- 2022
16. Evaluating Non-Analytic Functions of Matrices
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Yoel Shkolnisky and Nir Sharon
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Chebyshev polynomials ,Smoothness (probability theory) ,Applied Mathematics ,Spectrum (functional analysis) ,010103 numerical & computational mathematics ,02 engineering and technology ,Numerical Analysis (math.NA) ,01 natural sciences ,Matrix (mathematics) ,Real-valued function ,Convergence (routing) ,0202 electrical engineering, electronic engineering, information engineering ,FOS: Mathematics ,Applied mathematics ,020201 artificial intelligence & image processing ,Mathematics - Numerical Analysis ,0101 mathematics ,Focus (optics) ,Analysis ,Mathematics ,Analytic function - Abstract
The paper revisits the classical problem of evaluating f ( A ) for a real function f and a matrix A with real spectrum. The evaluation is based on expanding f in Chebyshev polynomials, and the focus of the paper is to study the convergence rates of these expansions. In particular, we derive bounds on the convergence rates which reveal the relation between the smoothness of f and the diagonalizability of the matrix A. We present several numerical examples to illustrate our analysis.
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- 2015
17. The effect of prolonged physical activity performed during extreme caloric deprivation on cardiac function
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Chaim Lotan, Daniel S. Moran, Ora Paltiel, Amir Hadid, David Leibowitz, David Planer, Nir Sharon, Elad Jacoby, and Tomer Erlich
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Cardiac function curve ,Adult ,Male ,medicine.medical_specialty ,Anatomy and Physiology ,Ventricular Dysfunction, Right ,Diastole ,lcsh:Medicine ,Cardiovascular ,Cardiovascular System ,Ventricular Dysfunction, Left ,Oxygen Consumption ,Endurance training ,Weight loss ,Internal medicine ,Natriuretic Peptide, Brain ,medicine ,Humans ,Sports and Exercise Medicine ,Israel ,lcsh:Science ,Biology ,Exercise ,Caloric Restriction ,Multidisciplinary ,Ejection fraction ,Physical Education and Training ,business.industry ,Body Weight ,lcsh:R ,Heart ,Brain natriuretic peptide ,Endocrinology ,Blood pressure ,Military Personnel ,Echocardiography ,Urine osmolality ,Medicine ,lcsh:Q ,medicine.symptom ,business ,Biomarkers ,Research Article - Abstract
BACKGROUND: Endurance exercise may induce transient cardiac dysfunction. Data regarding the effect of caloric restriction on cardiac function is limited. We studied the effect of physical activity performed during extreme caloric deprivation on cardiac function. METHODS: Thirty-nine healthy male soldiers (mean age 20 ± 0.3 years) were studied during a field training exercise lasted 85-103 hours, with negligible food intake and unlimited water supply. Anthropometric measurements, echocardiographic examinations and blood and urine tests were performed before and after the training exercise. RESULTS: Baseline VO(2) max was 59 ± 5.5 ml/kg/min. Participants' mean weight reduction was 5.7 ± 0.9 kg. There was an increase in plasma urea (11.6 ± 2.6 to 15.8 ± 3.8 mmol/L, p
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- 2012
18. Obesity and Blood Pressure in 17-Year-Old Offspring of Mothers with Gestational Diabetes: Insights from the Jerusalem Perinatal Study
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Yael Wolff Sagy, Shoshanah Yazdgerdi, Yechiel Friedlander, Vardiella Meiner, Meytal Avgil Tsadok, David S. Siscovick, Hagit Hochner, Orly Manor, Ora Paltiel, Uriel Elchalal, and Nir Sharon
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Adult ,Male ,medicine.medical_specialty ,lcsh:Internal medicine ,Adolescent ,Article Subject ,endocrine system diseases ,lcsh:Specialties of internal medicine ,Offspring ,Endocrinology, Diabetes and Metabolism ,Birth weight ,lcsh:Medicine ,Blood Pressure ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,Cohort Studies ,Pregnancy ,lcsh:RC581-951 ,Diabetes mellitus ,Humans ,Medicine ,Obesity ,Israel ,lcsh:RC31-1245 ,lcsh:RC648-665 ,Anthropometry ,business.industry ,Obstetrics ,lcsh:R ,nutritional and metabolic diseases ,General Medicine ,medicine.disease ,female genital diseases and pregnancy complications ,Gestational diabetes ,Diabetes, Gestational ,Blood pressure ,Prenatal Exposure Delayed Effects ,Hypertension ,Female ,business ,Research Article ,Cohort study - Abstract
Objective. Gestational diabetes mellitus (GDM) influences fetal development and offspring's metabolic risk. We evaluated this association in 17-year-old offspring adjusting for birth weight (BW) and prepregnancy maternal BMI (mBMI).Study Design. The JPS birth cohort contains extensive data on 92,408 births from 1964 to 1976. Offspring's BMI and blood pressure (BP) were obtained from military records. For a subcohort born between 1974 and 1976, prepregnancy mBMI was available. Offspring were classified as born to mothers with GDM () or born to mothers without recorded GDM ().Results. GDM offspring had higher mean BMI and systolic and diastolic BP compared to no-recorded-GDM offspring. After adjusting for BW, GDM remained significantly associated with offspring BMI and diastolic BP ( = 1.169 and 1.520, resp.). In the subcohort, when prepregnancy mBMI was entered to the models, it markedly attenuated the associations with GDM.Conclusions. Maternal characteristics have long-term effects on cardiometabolic outcomes of their offspring aged 17 years.
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- 2011
19. Effects of the single nucleotide polymorphism at MDM2 309 on breast cancer patients with/without BRCA1/2 mutations
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Tamar Hamburger, Eli Pikarsky, Hovav Nechushtan, Susan Mendelson, Luna Kadouri, Tamar Peretz, and Nir Sharon
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Adult ,Oncology ,Cancer Research ,medicine.medical_specialty ,Genotype ,Population ,Estrogen receptor ,Breast Neoplasms ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,lcsh:RC254-282 ,Breast cancer ,Gene Frequency ,Internal medicine ,Genetics ,medicine ,Humans ,skin and connective tissue diseases ,education ,Allele frequency ,Survival analysis ,Aged ,BRCA2 Protein ,education.field_of_study ,BRCA1 Protein ,Cancer ,Proto-Oncogene Proteins c-mdm2 ,Middle Aged ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Survival Analysis ,Jews ,Mutation ,Cancer research ,Female ,Apoptosis Regulatory Proteins ,Research Article - Abstract
Background A germ line single nucleotide polymorphism (SNP) in the first intron of the gene encoding MDM2 at position 309, an important modulator of p53, has been described. BRCA1/2 mutation have been associated with increased rates of breast cancers with mutated P53. It was shown that the presence of MDM2 309 SNP correlated with younger cancer onset age in individuals with a p53 mutations. The differential effects of this SNP were also linked to estrogen receptor activation. Here we report on our study of 453 Ashkenazi breast cancer patients of whom 180 were positive for the known Ashkenazi BRCA1/2 mutations Methods DNA from breast cancer patients was obtained for analysis of one of the three common BRCA1/2 mutations and MDM2 SNP309. Data regarding cancer onset and death ages was obtained from our database and Statistical analysis was performed using the SPSS® statistical package (SPCC Inc., Chicago, IL), and JMP® software (SAS Institute, Cary, NC). Results The percentage of MDM2 SNP309 in control and BRCA 1/2 population which is similar to that reported for other Jewish Ashkenazi populations at 52.2% for the heterozygotes and 25.0% for MDM2SNP309G/G and 22.8% for MDM2SNP309T/T. There was not a statistical significant difference in median age of disease onset in the different MDM2 SNP309 subgroups of the BRCA1/2 carriers. When we further divided the group into under and above 51 years old ( presumed menopause age) in the BRCA1 positive subset we found that there were less patients of the MDM2SNP309 G/G versus the MDM2SNP309 T/T in the over 51 patient group (p = 0.049). This result has been obtained in a relatively small subgroup and is of borderline statistical significance. Interestingly, in the BRCA1/2 mutation carriers, we found a survival advantage for patients harboring the SNP309 G/G genotype (p = 0.0086) but not for the 272 patients not harbouring this mutations. Conclusion MDM2SNP309G/G main effect on BRCA1/2 positive mutation carriers is linked to its effect on patients survival. Further research is needed in order to understand the reason for this difference.
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- 2009
20. 30 - Vascular Progenitor Cells in the Human Model
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Gerecht-Nir, Sharon and Itskovitz-Eldor, Joseph
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- 2004
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21. Genetic polymorphisms of vitamin D receptor (VDR) in Fabry disease.
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Michael Teitcher, Sarah Weinerman, Catharina Whybra, Michael Beck, Nir Sharon, Deborah Elstein, and Gheona Altarescu
- Abstract
Abstract Fabry disease, an X-linked inborn error of metabolism, is characterized by multi-organ involvement including cardiac signs of left ventricular hypertrophy and abnormal intima-medial (IMT) thickening of arteries, progressive renal failure, neurological involvement, and more. The vitamin D receptor (VDR) and an enzyme producing vitamin D3 result in an autocrine loop with direct effects on blood vessels. The purpose of this study is to assess VDR polymorphisms (BsmI, FokI, ApaI, and TaqI) relative to clinically important disease parameters using a disease-specific severity score (MSSI) and haplotype analysis. There were statistically significant differences between females (43% of 74 patients) and males in MSSI total scores, and in general and neurologic sub-scores. There appears to be a protective effect of the TaqI tt genotype so that there were significantly lower scores in clinical categories between those with the tt genotype versus those with the TT genotype. Multivariate models of haplotypes with MSSI scores reveal that T-A-f-B and t-a-F-b haplotypes of the VDR gene polymorphisms are significantly associated with variation in the Fabry phenotype. Despite the limitations of using the MSSI score as a clinical correlate, these results are provocative and further studies in larger cohorts with more males are recommended. [ABSTRACT FROM AUTHOR]
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- 2008
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22. Biophysical regulation during cardiac development and application to tissue engineering.
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Gerecht-Nir, Sharon, Radisic, Milica, Park, Hyoungshin, Cannizzaro, Christopher, Boublik, Jan, Langer, Robert, and Vunjak-Novakovic, Gordana
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TISSUE engineering ,BIOMEDICAL engineering ,TISSUE culture ,MYOCARDIUM ,TISSUES - Abstract
Tissue engineering combines the principles of biology, engineering and medicine to create biological substitutes of native tissues, with an overall objective to restore normal tissue function. It is thought that the factors regulating tissue development in vivo (genetic, molecular and physical) can also direct cell fate and tissue assembly in vitro. In light of this paradigm, tissue engineering can be viewed as an effort of "imitating nature". We first discuss biophysical regulation during cardiac development and the factors of interest for application in tissue engineering of the myocardium. Then we focus on the biomimetic approach to cardiac tissue engineering which involves the use of culture systems designed to recapitulate some aspects of the actual in vivo environment. To mimic cell signaling in native myocardium, subpopulations of neonatal rat heart cells were cultured at a physiologically high cell density in three-dimensional polymer scaffolds. To mimic the capillary network, highly porous elastomer scaffolds with arrays of parallel channels were perfused with culture medium. To mimic oxygen supply by hemoglobin, culture medium was supplemented with an oxygen carrier. To enhance electromechanical coupling, tissue constructs were induced to contract by applying electrical signals mimicking those in native heart. Over only eight days of cultivation, the biomimetic approach resulted in tissue constructs which contained electromechanically coupled cells expressing cardiac differentiation markers and cardiac-like ultrastructure and contracting synchronously in response to electrical stimulation. Ongoing studies are aimed at extending this approach to tissue engineering of functional cardiac grafts based on human cells. [ABSTRACT FROM AUTHOR]
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- 2006
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23. Three-dimensional porous alginate scaffolds provide a conducive environment for generation of well-vascularized embryoid bodies from human embryonic stem cells.
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Gerecht-Nir, Sharon, Cohen, Smadar, Ziskind, Anna, and Itskovitz-Eldor, Joseph
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- 2004
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24. Bioreactor cultivation enhances the efficiency of human embryoid body (hEB) formation and differentiation.
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Gerecht-Nir, Sharon, Cohen, Smadar, and Itskovitz-Eldor, Joseph
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- 2004
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25. Cardiovascular potential of embryonic stem cells.
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Gerecht-Nir, Sharon, Fishman, Bettina, and Itskovitz-Eldor, Joseph
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- 2004
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26. Human embryonic stem cells for cardiovascular repair
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Nir, Sharon Gerecht, David, Robert, Zaruba, Marc, Franz, Wolfgang-M., and Itskovitz-Eldor, Joseph
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- *
ISCHEMIA , *STEM cells , *MUSCLE cells - Abstract
The critical loss of functional cardiomyocytes causes severe deterioration of pump function, resulting in heart failure. The possibility to regenerate or repair damaged or ischemic cardiac tissue is a great challenge for the future treatment of end-stage heart failure. As cardiomyocytes cannot be regenerated in adults, current therapeutic modalities for the treatment of end-stage heart failure are limited and include medical therapy, mechanical left ventricular assist devices, and cardiac transplantation. This review will focus on the potential use of human embryonic stem (hES) cell-derived cardiomyocytes and vascular cells, as a therapeutic tool for the treatment of myocardial infarction and end-stage heart failure. [Copyright &y& Elsevier]
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- 2003
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27. Method of moments for 3D single particle ab initio modeling with non-uniform distribution of viewing angles.
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Nir Sharon, Joe Kileel, Yuehaw Khoo, Boris Landa, and Amit Singer
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IMAGE reconstruction algorithms , *PARTICLES , *WAVE functions - Abstract
Single-particle reconstruction in cryo-electron microscopy (cryo-EM) is an increasingly popular technique for determining the 3D structure of a molecule from several noisy 2D projections images taken at unknown viewing angles. Most reconstruction algorithms require a low-resolution initialization for the 3D structure, which is the goal of ab initio modeling. Suggested by Zvi Kam in 1980, the method of moments (MoM) offers one approach, wherein low-order statistics of the 2D images are computed and a 3D structure is estimated by solving a system of polynomial equations. Unfortunately, Kam’s method suffers from restrictive assumptions, most notably that viewing angles should be distributed uniformly. Often unrealistic, uniformity entails the computation of higher-order correlations, as in this case first and second moments fail to determine the 3D structure. In the present paper, we remove this hypothesis, by permitting an unknown, non-uniform distribution of viewing angles in MoM. Perhaps surprisingly, we show that this case is statistically easier than the uniform case, as now first and second moments generically suffice to determine low-resolution expansions of the molecule. In the idealized setting of a known, non-uniform distribution, we find an efficient provable algorithm inverting first and second moments. For unknown, non-uniform distributions, we use non-convex optimization methods to solve for both the molecule and distribution. [ABSTRACT FROM AUTHOR]
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- 2020
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28. Design principle of gene expression used by human stem cells: implication for pluripotency.
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Golan-Mashiach, Michal, Dazard, Jean-Eudes, Gerecht-Nir, Sharon, Amariglio, Ninette, Fisher, Tamar, Jacob-Hirsch, Jasmine, Bielorai, Bella, Osenberg, Sivan, Barad, Omer, Getz, Gad, Toren, Amos, Rechavi, Gideon, Itskovitz-Eldor, Joseph, Domany, Eytan, and Givol, David
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GENE expression ,EMBRYONIC stem cells ,GENES ,STEM cells ,HEMATOPOIETIC stem cells - Abstract
Presents a study that compared gene expression profiles of human embryonic stem cells with different adult stem /progenitor cells and their corresponding differentiated cells, epidermis differentiated cells, and hematopoietic differentiated cells. Definition of genes responsible for stem cell properties; Identification of design principles that help to maintain the pluripotency of stem cells.
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- 2005
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29. Vascular Development in Early Human Embryos and in Teratomas Derived from Human Embryonic Stem Cells1
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Gerecht-Nir, Sharon, Osenberg, Sivan, Nevo, Ori, Ziskind, Anna, Coleman, Raymond, and Itskovitz-Eldor, Joseph
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- 2004
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30. Discovery of Cardiac Marker Expression in Human Embryonic Stem Cells by Gene Expression Profiling.
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Itzhaki, Ayelet, Guetta, Esther, Gerecht-Nir, Sharon, Amariglio, Ninette, Rechavi, Gideon, Feldman, Baruch, Holbova, Radka, Itskovitz-Eldor, Joseph, and Leor, Jonathan
- Published
- 2006
31. Graft survival and its determinants: a 3 year national experience with liver transplantation in Israel.
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Ekka-Zohar A, Zitser-Gurevich Y, Mandel M, Weiss-Salz I, Nir S, Mor E, Richard N, Merhav H, Bruck R, and Simchen E
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- Adult, Aged, Diagnosis-Related Groups, Female, Humans, Israel epidemiology, Liver Failure surgery, Logistic Models, Male, Medical Records, Middle Aged, Multivariate Analysis, Odds Ratio, Retrospective Studies, Risk Factors, Severity of Illness Index, Survival Analysis, Graft Survival, Liver Transplantation statistics & numerical data
- Abstract
Background: There is a dearth of organs for liver transplantation in Israel. Enhancing our understanding of factors affecting graft survival in this country could help optimize the results of the transplant operation., Objectives: To report 3 years national experience with orthotopic liver transplantation, and to evaluate patient and perioperative risk factors that could affect 1 year graft survival., Methods: The study related to all 124 isolated adult liver transplantations performed in Israel between October 1997 and October 2000. Data were abstracted from the medical records. One-year graft survival was described using the Kaplan-Meier survival curve and three multivariate logistic regression models were performed: one with preoperative case-mix factors alone, and the other two with the addition of donor and operative factors respectively., Results: Of the 124 liver transplantations performed, 32 failed (25.8%). The 1 year survival was lower than rates reported from both the United States and Europe but the difference was not significant. Of the preoperative risk factors, recipient age > 60 years, critical condition prior to surgery, high serum bilirubin and serum hemoglobin < or = 10 g/dl were independently associated with graft failure, adjusting for all the other factors that entered the logistic regression equation. Extending the model to include donor and operative factors raised the C-statistic from 0.79 to 0.87. Donor age > or = 40, cold ischemic time > 10 hours and a prolonged operation (> 10 hours) were the additional predictors for graft survival. A MELD score of over 18 was associated with a sixfold increased risk for graft failure (odds ratio = 6.5, P = 0.001)., Conclusions: Graft survival in Israel is slightly lower than that reported from the U.S. and Europe. Adding donor and operative factors to recipient characteristics significantly increased our understanding of 1 year survival of liver grafts.
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- 2006
32. Functional properties of human embryonic stem cell-derived cardiomyocytes: intracellular Ca2+ handling and the role of sarcoplasmic reticulum in the contraction.
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Dolnikov K, Shilkrut M, Zeevi-Levin N, Gerecht-Nir S, Amit M, Danon A, Itskovitz-Eldor J, and Binah O
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- Animals, Caffeine pharmacology, Calcium metabolism, Dose-Response Relationship, Drug, Heart Conduction System drug effects, Heart Conduction System physiology, Humans, Mice, Myocardial Contraction drug effects, Ryanodine pharmacology, Thapsigargin pharmacology, Verapamil pharmacology, Calcium physiology, Embryo, Mammalian cytology, Myocardial Contraction physiology, Myocytes, Cardiac physiology, Sarcoplasmic Reticulum physiology, Stem Cells physiology
- Abstract
Since cardiac transplantation is limited by the small availability of donor organs, regeneration of the diseased myocardium by cell transplantation is an attractive therapeutic modality. To determine the compatibility of human embryonic stem cell-derived cardiomyocytes (hESC-CMs) (7 to 55 days old) with the myocardium, we investigated their functional properties regarding intracellular Ca2+ handling and the role of the sarcoplasmic reticulum in the contraction. The functional properties of hESC-CMs were investigated by recording simultaneously [Ca2+]i transients and contractions. Additionally, we performed Western blot analysis of the Ca2+-handling proteins SERCA2, calsequestrin, phospholamban, and Na+/Ca2+ exchanger (NCX). Our major findings are, first, that hESC-CMs displayed temporally related [Ca2+]i transients and contractions, negative force-frequency relations, and lack of post-rest potentiation. Second, ryanodine, thapsigargin, and caffeine did not affect the [Ca2+]i transient and contraction, indicating that at this developmental stage, contraction depends on transsarcolemmal Ca2+ influx rather than on sarcoplasmic reticulum Ca2+ release. Third, in agreement with the notion that a voltage-dependent Ca2+ current is present in hESC-CMs and contributes to the mechanical function, verapamil completely blocked contraction. Fourth, whereas hESC-CMs expressed SERCA2 and NCX at levels comparable to those of the adult porcine myocardium, calsequestrin and phospholamban were not expressed. Our study shows for the first time that functional properties related to intracellular Ca2+ handling of hESC-CMs differ markedly from the adult myocardium, probably due to immature sarcoplasmic reticulum capacity.
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- 2006
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33. Vascular gene expression and phenotypic correlation during differentiation of human embryonic stem cells.
- Author
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Gerecht-Nir S, Dazard JE, Golan-Mashiach M, Osenberg S, Botvinnik A, Amariglio N, Domany E, Rechavi G, Givol D, and Itskovitz-Eldor J
- Subjects
- Antigens, CD34 biosynthesis, Cell Differentiation, Cluster Analysis, Computational Biology, Humans, Immunoblotting, Immunohistochemistry, Microscopy, Confocal, Muscle, Smooth cytology, Neovascularization, Pathologic, Oligonucleotide Array Sequence Analysis, Phenotype, Reverse Transcriptase Polymerase Chain Reaction, Time Factors, Transcriptional Activation, Up-Regulation, Blood Vessels embryology, Embryo, Mammalian cytology, Embryonic Development, Gene Expression Regulation, Developmental, Stem Cells cytology
- Abstract
The study of the cascade of events of induction and sequential gene activation that takes place during human embryonic development is hindered by the unavailability of postimplantation embryos at different stages of development. Spontaneous differentiation of human embryonic stem cells (hESCs) can occur by means of the formation of embryoid bodies (EBs), which resemble certain aspects of early embryos to some extent. Embryonic vascular formation, vasculogenesis, is a sequential process that involves complex regulatory cascades. In this study, changes of gene expression along the development of human EBs for 4 weeks were studied by large-scale gene screening. Two main clusters were identified-one of down-regulated genes such as POU5, NANOG, TDGF1/Cripto (TDGF, teratocarcinoma-derived growth factor-1), LIN28, CD24, TERF1 (telomeric repeat binding factor-1), LEFTB (left-right determination, factor B), and a second of up-regulated genes such as TWIST, WNT5A, WT1, AFP, ALB, NCAM1. Focusing on the vascular system development, genes known to be involved in vasculogenesis and angiogenesis were explored. Up-regulated genes include vasculogenic growth factors such as VEGFA, VEGFC, FIGF (VEGFD), ANG1, ANG2, TGFbeta3, and PDGFB, as well as the related receptors FLT1, FLT4, PDGFRB, TGFbetaR2, and TGFbetaR3, other markers such as CD34, VCAM1, PECAM1, VE-CAD, and transcription factors TAL1, GATA2, and GATA3. The reproducibility of the array data was verified independently and illustrated that many genes known to be involved in vascular development are activated during the differentiation of hESCs in culture. Hence, the analysis of the vascular system can be extended to other differentiation pathways, allocating human EBs as an in vitro model to study early human development., (Copyright 2004 Wiley-Liss, Inc.)
- Published
- 2005
- Full Text
- View/download PDF
34. Controlled, scalable embryonic stem cell differentiation culture.
- Author
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Dang SM, Gerecht-Nir S, Chen J, Itskovitz-Eldor J, and Zandstra PW
- Subjects
- Animals, Bioreactors, Cadherins metabolism, Cell Aggregation, Cells, Cultured, Embryo, Mammalian cytology, Humans, Mice, Pluripotent Stem Cells metabolism, Cell Culture Techniques, Cell Differentiation, Pluripotent Stem Cells cytology
- Abstract
Embryonic stem (ES) cells are of significant interest as a renewable source of therapeutically useful cells. ES cell aggregation is important for both human and mouse embryoid body (EB) formation and the subsequent generation of ES cell derivatives. Aggregation between EBs (agglomeration), however, inhibits cell growth and differentiation in stirred or high-cell-density static cultures. We demonstrate that the agglomeration of two EBs is initiated by E-cadherin-mediated cell attachment and followed by active cell migration. We report the development of a technology capable of controlling cell-cell interactions in scalable culture by the mass encapsulation of ES cells in size-specified agarose capsules. When placed in stirred-suspension bioreactors, encapsulated ES cells can be used to produce scalable quantities of hematopoietic progenitor cells in a controlled environment.
- Published
- 2004
- Full Text
- View/download PDF
35. Human embryonic stem cells: a potential source for cellular therapy.
- Author
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Gerecht-Nir S and Itskovitz-Eldor J
- Subjects
- Cell Differentiation, Heart Ventricles cytology, Humans, Cardiomyopathies therapy, Cardiovascular System embryology, Myocytes, Cardiac cytology, Pluripotent Stem Cells cytology, Stem Cell Transplantation
- Abstract
Many degenerative human diseases reflect damage to cells that are not normally repaired or replaced, such as diabetes, Parkinson's disease, hepatic failure and congestive heart failure. Preliminary studies in animals and humans have suggested that these diseases may be treatable by transplantation of healthy cells. Such cells may be obtained by in vitro culture of embryonic stem cells, which are capable of differentiating into many cell types. This review discusses applicative approaches for the derivation, maintenance and safety of human embryonic stem (hES) cells as well as ethical concerns surrounding their possible source for cellular therapy. hES cells offer broad application in cellular therapy; however, this review specifically emphasizes on cardiovascular repair, generation and characterization of hES cell-derived cardiomyocytes, vascular progenitors and differentiation of derivatives.
- Published
- 2004
- Full Text
- View/download PDF
36. Cardiovascular potential of embryonic stem cells.
- Author
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Gerecht-Nir S, Fishman B, and Itskovitz-Eldor J
- Subjects
- Animals, Cardiovascular Physiological Phenomena, Cell Differentiation physiology, Cells, Cultured, Humans, Multipotent Stem Cells physiology, Cardiovascular System cytology, Cardiovascular System embryology, Multipotent Stem Cells cytology
- Abstract
Initial events involved in the process of heart formation consist of myocardial differentiation as well as development of endothelial and endocardial tissues. As only limited means are allocated to the studying of cardiovascular system development, embryonic stem cells (ESCs) isolated from the inner cell mass (ICM) of developing mice or human blastocysts offer the first step toward the understanding of these complex and intriguing events. ESCs are able to differentiate into a wide range of cell types, including various vascular cells and cardiomyocytes, and their self-renewal capability renders them a unique, homogeneous, and unlimited preliminary population of cells for the investigation of early developmental events of cardiovascular system and lineage commitment. This review summarizes the accumulated knowledge of the cellular and molecular mechanisms involved in the development of the cardiovascular system., (Copyright 2004 Wiley-Liss, Inc.)
- Published
- 2004
- Full Text
- View/download PDF
37. Advances in human stem cell research.
- Author
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Gerecht-Nir S, Eldor L, and Itskovitz-Eldor J
- Subjects
- Cell Differentiation, Embryo Research, Female, Humans, Models, Biological, Pregnancy, Research Design trends, Embryo, Mammalian cytology, Stem Cells cytology
- Published
- 2003
- Full Text
- View/download PDF
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