21 results on '"Nadmid, Suvd"'
Search Results
2. Secondary metabolites overproduction through transcriptional gene cluster refactoring
- Author
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Horbal, Liliya, Marques, Filipe, Nadmid, Suvd, Mendes, Marta V., and Luzhetskyy, Andriy
- Published
- 2018
- Full Text
- View/download PDF
3. Identification of a Biosynthetic Gene Cluster Responsible for the Production of a New Pyrrolopyrimidine Natural Product—Huimycin
- Author
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Shuai, Hui, Myronovskyi, Maksym, Nadmid, Suvd, Luzhetskyy, Andriy, and HIPS, Helmholtz-Institut für Pharmazeutische Forschung Saarland, Universitätscampus E8.1 66123 Saarbrücken, Germany.
- Subjects
Biological Products ,pyrrolopyrimidines ,secondary metabolites ,lcsh:QR1-502 ,Gene Expression ,heterologous expression ,nucleoside ,kutzneria ,Article ,Streptomyces ,lcsh:Microbiology ,Biosynthetic Pathways ,Actinobacteria ,Pyrimidines ,Genes, Bacterial ,Multigene Family ,Pyrroles - Abstract
Pyrrolopyrimidines are an important class of natural products with a broad spectrum of biological activities, including antibacterial, antifungal, antiviral, anticancer or anti-inflammatory. Here, we present the identification of a biosynthetic gene cluster from the rare actinomycete strain Kutzneria albida DSM 43870, which leads to the production of huimycin, a new member of the pyrrolopyrimidine family of compounds. The huimycin gene cluster was successfully expressed in the heterologous host strain Streptomyces albus Del14. The compound was purified, and its structure was elucidated by means of nuclear magnetic resonance spectroscopy. The minimal huimycin gene cluster was identified through sequence analysis and a series of gene deletion experiments. A model for huimycin biosynthesis is also proposed in this paper.
- Published
- 2020
4. Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived sp. IB201691-2A
- Author
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Voitsekhovskaia, Irina, Paulus, Constanze, Dahlem, Charlotte, Rebets, Yuriy, Nadmid, Suvd, Zapp, Josef, Axenov-Gribanov, Denis, Rückert, Christian, Timofeyev, Maxim, Kalinowski, Jörn, Kiemer, Alexandra K, Luzhetskyy, Andriy, and HIPS, Helmholtz-Institut für Pharmazeutische Forschung Saarland, Universitätscampus E8.1 66123 Saarbrücken, Germany.
- Subjects
natural products ,angucycline ,Lake Baikal ,aquayamycin ,glycosyltransferase ,Streptomyces - Abstract
Natural products produced by bacteria found in unusual and poorly studied ecosystems, such as Lake Baikal, represent a promising source of new valuable drug leads. Here we report the isolation of a new Streptomyces sp. strain IB201691-2A from the Lake Baikal endemic mollusk Benedictia baicalensis. In the course of an activity guided screening three new angucyclines, named baikalomycins A-C, were isolated and characterized, highlighting the potential of poorly investigated ecological niches. Besides that, the strain was found to accumulate large quantities of rabelomycin and 5-hydroxy-rabelomycin, known shunt products in angucyclines biosynthesis. Baikalomycins A-C demonstrated varying degrees of anticancer activity. Rabelomycin and 5-hydroxy-rabelomycin further demonstrated antiproliferative activities. The structure elucidation showed that baikalomycin A is a modified aquayamycin with β-d-amicetose and two additional hydroxyl groups at unusual positions (6a and 12a) of aglycone. Baikalomycins B and C have alternating second sugars attached, α-l-amicetose and α-l-aculose, respectively. The gene cluster for baikalomycins biosynthesis was identified by genome mining, cloned using a transformation-associated recombination technique and successfully expressed in S. albus J1074. It contains a typical set of genes responsible for an angucycline core assembly, all necessary genes for the deoxy sugars biosynthesis, and three genes coding for the glycosyltransferase enzymes. Heterologous expression and deletion experiments allowed to assign the function of glycosyltransferases involved in the decoration of baikalomycins aglycone.
- Published
- 2020
5. Novel Biosynthetic Route to the Isoquinoline Scaffold.
- Author
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Shuai, Hui, Myronovskyi, Maksym, Rosenkränzer, Birgit, Paulus, Constanze, Nadmid, Suvd, Stierhof, Marc, Kolling, Dominik, and Luzhetskyy, Andriy
- Published
- 2022
- Full Text
- View/download PDF
6. Bioactive flavonoids from plant extract of Pyrethrum pulchrum and its acute toxicity.
- Author
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Erdenetsogt, Uugangerel, Nadmid, Suvd, Paulus, Constanze, Chanagsuren, Ganchimeg, Dolgor, Erdenechimeg, Gotov, Choijamts, Dahse, Hans-Martin, Luzhetskyy, Andriy, and Dagvadorj, Enkhmaa
- Subjects
PLANT extracts ,CHRONIC myeloid leukemia ,FLAVONOIDS ,ACUTE myeloid leukemia ,ACUTE leukemia - Abstract
Pyrethrum pulchrum Ledeb. has been a phytochemically unexplored Mongolian medicinal folklore plant. In this study, its total flavonoid content was determined and fourteen flavonoids (1-14) were isolated from the aerial parts of P. pulchrum. Their structures were elucidated on the basis of spectroscopic data. The compounds 12-14, methoxyflavones, were tested for antiproliferative and cytotoxic activity against A549, HeLa, K-562, THP-1 and HUVEC cell lines. This is the first report on the effects of 5,7,4'-trihydroxy-3,6,3'-trimethoxyflavone (13) against all tested cell lines and it exhibited potent activity against chronic myeloid leukemia K-562 and acute monocytic leukemia THP-1 cells, each with GI
50 value at 2.0 μg/mL. The 5,4'-dihydroxy-3,6,7,3'-tetramethoxyflavone (14) showed the most potent activity against THP-1 (GI50 = 1.1 μg/mL) and the highest cytotoxicity (5.6 μg/mL). In addition, acute toxicity of plant ethanol extract was evaluated and the lethal dose (LD50 ) was estimated at 1048 mg/kg. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
7. New Guaianolide Sesquiterpene Lactones and Other Constituents from Pyrethrum pulchrum.
- Author
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Erdenetsogt, Uugangerel, Nadmid, Suvd, Paetz, Christian, Dahse, Hans-Martin, Voigt, Kerstin, Gotov, Choijamts, Boland, Wilhelm, and Dagvadorj, Enkhmaa
- Subjects
- *
MEDICINAL plants , *TERPENES , *PLANT anatomy , *ANTI-infective agents , *ANTINEOPLASTIC agents , *PHYTOCHEMICALS , *LACTONES , *PLANTS , *TRYPTOPHAN , *DESCRIPTIVE statistics , *CELL proliferation , *PLANT extracts , *MOLECULAR structure , *CHROMATOGRAPHIC analysis , *CELL lines , *BACTERIA , *PHARMACODYNAMICS - Abstract
Pyrethrum pulchrum is a rare Mongolian plant species that has been traditionally used as an ingredient in various remedies. Bioactivity-guided fractionation performed on the methanol extract of its aerial parts led to the isolation of 2 previously undescribed guaianolide-type sesquiterpene lactones, namely 1 β ,10 β -epoxy-8 α -hydroxyguaia-3,11(13)-dien-6,12-olide (1) and 1,8,10-trihydroxyguaia-3,11(13)-dien-6,12-olide (2), along with the isolation or chromatographic identification of 11 compounds, arglabin (3), 3 β -hydroxycostunolide (4), isocostic acid (5), (E)-9-(2-thienyl)-6-nonen-8-yn-3-ol (6), (Z)-9-(2-thienyl)-6-nonen-8-yn-3-ol (7), N 1 , N 5 , N 10 , N 14-tetra-p-coumaroyl spermine (8), chlorogenic acid (9), 3,5-di- O -caffeoylquinic acid (10), 3,5-di- O -caffeoylquinic acid methyl ester (11), 3,4-di- O -caffeoylquinic acid (12), and tryptophan (13). Their structures were assigned based on spectroscopic and spectrometric data. The antimicrobial, antiproliferative and cytotoxic activities of selected compounds were evaluated. The new compounds showed weak to moderate antimicrobial activity. Arglabin (3), the major sesquiterpene lactone found in the methanol extract of P. pulchrum , exhibited the highest activity against human cancer lines, while compound 1 also possesses significant antiproliferative activity against leukemia cells. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
8. Isolation and characterization of novel natural compounds from Myxobacteria
- Author
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Nadmid, Suvd and Müller, Rolf
- Subjects
structure elucidation ,Naturstoff ,Myxobakterien ,Strukturaufklärung ,Isolierung ,natural compounds ,myxobacteria ,characterization ,ddc:500 ,ddc:620 ,isolation ,Sekundärmetabolit - Abstract
Microbial secondary metabolites are known to be an excellent source for novel therapeutic agents. Among other microorganisms, myxobacteria are continuously providing new biologically active natural compounds with unique structures. Here, chemical screening of these gram-negative bacteria has resulted in the identification of two new structural classes of natural products along with a new derivative of a sponge-derived natural product. In this thesis, isolation, structural elucidation, and biological activity of these new secondary metabolites are presented. New catecholate-type siderophores, hyalachelins A-C, were isolated from the strain belonging to the underexplored species Hyalangium minutum. Their complete 3D structure was obtained by combining the spectroscopic data and quantum mechanical calculations. Iron binding activity of hyalachelins was determined by CAS assay. Moreover, novel polyketides, named cystochromones, were isolated from Cystobacter sp. Cystochromones bear a chromone ring that is substituted by a long aliphatic chain on position C-5 which is not preceded among natural chromones. Additionally, a biosynthetic pathway was proposed on the basis of the results of the feeding experiments. Furthermore, a new derivative of the marine sponge-derived peptide microsclerodermin was isolated from the terrestrial myxobacterium. This result represents the rare example of isolation of same compounds from terrestrial and marine sources. Mikrobielle Naturstoffe sind bekanntermaßen eine ergiebige Quelle für neue therapeutische Wirkstoffe. Aus Myxobakterien werden fortwährend neue biologisch aktive Naturstoffe mit einzigartigen Strukturen isoliert. Ein chemisches screening dieser Gram-negativen Bakterien resultierte in der Identifizierung von zwei strukturell neuen Klassen von Sekundärmetaboliten und einem neuen Derivat eines bereits bekannten Naturstoffes. In der vorliegenden Arbeit werden die Isolierung, Strukturaufklärung und die biologischen Aktivitäten dieser Substanzen diskutiert. Die Hyacheline A-C, neue Siderophore vom Catecholat-Typ, wurden aus einem Stamm der wenig erforschten myxobakteriellen Spezies Hyalangium minutum isoliert. Die dreidimensionale Struktur der Hyacheline wurde mittels Kombination von spektroskopischen Daten mit quantenmechanischen Berechnungen aufgeklärt, sowie ihr Eisen-Bindungsverhalten anhand von CAS Assays bestimmt. Die Cystochromone wurden aus Extrakten von Cystobacter sp. isoliert. Die chromonartigen Polyketide tragen an Position C-5 des Chromonsystems einen langkettigen aliphatischen Rest. Diese Substitution ist von natürlichen Chromonen bisher nicht bekannt. Auf Basis von Fütterungsexperimenten konnte ein Biosyntheseweg für die Cystochromone vorgeschlagen werden. Weiterhin wurde ein neues Derivat der Mikrosklerodermine aus dem Extrakt eines terrestrischen Myxobakteriums isoliert. Diese Naturstoffe waren bisher aus Meeresschwämmen bekannt und stellen ein Beispiel des selten beschriebenen Falles eines gemeinsamen oder ähnlichen Sekundärmetabolismus von marinen und terrestrischen Mikroorganismen dar.
- Published
- 2015
- Full Text
- View/download PDF
9. Perquinoline A–C: neuartige bakterielle Tetrahydroisochinoline mit einer bemerkenswerten Biosynthese.
- Author
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Rebets, Yuriy, Nadmid, Suvd, Paulus, Constanze, Dahlem, Charlotte, Herrmann, Jennifer, Hübner, Harald, Rückert, Christian, Kiemer, Alexandra K., Gmeiner, Peter, Kalinowski, Jörn, Müller, Rolf, and Luzhetskyy, Andriy
- Subjects
- *
ACYL coenzyme A , *STREPTOMYCES , *ENZYMES , *ACYLTRANSFERASES - Abstract
Die Analyse des metabolischen Profils von Streptomyces sp. IB2014/ 016‐6 führte zur Identifizierung der drei neuen Tetrahydroisochinolin‐Naturstoffe Perquinoline A–C (1–3). Durch Fütterungsexperimente mit angereicherten Vorläuferverbindungen und Klonen des pqr‐Biosynthesegenclusters wurde entdeckt, dass 1–3 unter Wirkung einiger ungewöhnlicher Enzyme synthetisiert werden. Die Biosynthese startet mit der Kondensation von Succinyl‐CoA und l‐Phenylalanin, katalysiert durch PqrA, einem Enzym mit Ähnlichkeit zur Amino‐7‐oxononanoatsynthase. Diese Reaktion ist innerhalb der Naturstoffchemie selten anzufinden. Die zweite Kondensation und der Ringschluss wird von PqrG, ein acyl‐CoA Ligase‐ähnliches Enzym, durchgeführt. Die Biosynthese wird durch den Transfer einer Aminobuttersäure‐ bzw. einer β‐Alaningruppe durch die ATP‐grasp RimK‐ähnliche Ligase PqrI abgeschlossen. Der entdeckte Verlauf repräsentiert ein neues Beispiel für die Zusammensetzung von Naturstoffen mit einem Tetrahydroiso‐chinolin‐Kern. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
10. Perquinolines A–C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis.
- Author
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Rebets, Yuriy, Nadmid, Suvd, Paulus, Constanze, Dahlem, Charlotte, Herrmann, Jennifer, Hübner, Harald, Rückert, Christian, Kiemer, Alexandra K., Gmeiner, Peter, Kalinowski, Jörn, Müller, Rolf, and Luzhetskyy, Andriy
- Subjects
- *
BIOSYNTHESIS , *TETRAHYDROISOQUINOLINES , *NATURAL products , *ACYLTRANSFERASES , *GENE clusters , *METABOLIC profile tests - Abstract
Metabolic profiling of Streptomyces sp. IB2014/016‐6 led to the identification of three new tetrahydroisoquinoline natural products, perquinolines A–C (1–3). Labelled precursor feeding studies and the cloning of the pqr biosynthetic gene cluster revealed that 1–3 are assembled by the action of several unusual enzymes. The biosynthesis starts with the condensation of succinyl‐CoA and l‐phenylalanine catalyzed by the amino‐7‐oxononanoate synthase‐like enzyme PqrA, representing rare chemistry in natural product assembly. The second condensation and cyclization events are conducted by PqrG, an enzyme resembling an acyl‐CoA ligase. Last, ATP‐grasp RimK‐type ligase PqrI completes the biosynthesis by transferring a γ‐aminobutyric acid or β‐alanine moiety. The discovered pathway represents a new route for assembling the tetrahydroisoquinoline cores of natural products. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
11. Hyalachelins A–C, Unusual Siderophores Isolatedfrom the Terrestrial Myxobacterium Hyalangium minutum.
- Author
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Nadmid, Suvd, Plaza, Alberto, Lauro, Gianluigi, Garcia, Ronald, Bifulco, Giuseppe, and Müller, Rolf
- Subjects
- *
SIDEROPHORES , *ALANGIUM , *CHEMICAL structure , *STEREOCHEMISTRY , *CIRCULAR dichroism - Abstract
Three new siderophores,termed hyalachelins A–C (1–3), were isolated from the terrestrial myxobacterium Hyalangiumminutum. Their structures were determined by2D NMR and HR-MS/MS experiments, and their stereochemical configurationwas established by a combination of NMR data, quantum mechanical calculations,and circular dichroism experiments. Hyalachelins are unusual catecholate-typesiderophores that bear a 3,7,8-trihydroxy-1-oxo-1,2,3,4-tetrahydroisoquinoline-3-carboxylicacid. Their iron chelating activities were evaluated in a CAS assayshowing EC50values of ∼30 μM. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
12. Microsclerodermins from Terrestrial Myxobacteria: An Intriguing Biosynthesis Likely Connected to a Sponge Symbiont.
- Author
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Hoffmann, Thomas, Müller, Stefan, Nadmid, Suvd, Garcia, Ronald, and Müller, Rolf
- Published
- 2013
- Full Text
- View/download PDF
13. Chromane Derivatives from Underground Parts of Iris tenuifolia and Their In Vitro Antimicrobial, Cytotoxicity and Antiproliferative Evaluation.
- Author
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Otgon, Oldokh, Nadmid, Suvd, Paetz, Christian, Dahse, Hans-Martin, Voigt, Kerstin, Bartram, Stefan, Boland, Wilhelm, and Dagvadorj, Enkhmaa
- Subjects
- *
ANTIBACTERIAL agents , *GRAM-positive bacteria , *GRAM-negative bacteria , *NUCLEAR magnetic resonance spectroscopy , *ENTEROCOCCUS faecalis , *ISOFLAVONES , *AGAR - Abstract
Phytochemical investigation of the ethanol extract of underground parts of Iris tenuifolia Pall. afforded five new compounds; an unusual macrolide termed moniristenulide (1), 5-methoxy-6,7-methylenedioxy-4-O-2′-cycloflavan (2), 5,7,2′,3′-tetrahydroxyflavanone (3), 5-hydroxy-6,7-dimethoxyisoflavone-2′-O-β-d-glucopyranoside (9), 5,2′,3′-dihydroxy-6,7-dimethoxyisoflavone (10), along with seven known compounds (4–8, 11–12). The structures of all purified compounds were established by analysis of 1D and 2D NMR spectroscopy and HR-ESI-MS. The antimicrobial activity of the compounds 1–3, 5, 9, and 10 was investigated using the agar diffusion method against fungi, Gram-positive and Gram-negative bacteria. In consequence, new compound 3 was found to possess the highest antibacterial activity against Enterococcus faecalis VRE and Mycobacterium vaccae. Cell proliferation and cytotoxicity tests were also applied on all isolated compounds and plant crude extract in vitro with the result of potent inhibitory effect against leukemia cells. In particular, the newly discovered isoflavone 10 was active against both of the leukemia cells K-562 and THP-1 while 4–6 of the flavanone type compounds were active against only THP-1. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
14. Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2A.
- Author
-
Voitsekhovskaia, Irina, Paulus, Constanze, Dahlem, Charlotte, Rebets, Yuriy, Nadmid, Suvd, Zapp, Josef, Axenov-Gribanov, Denis, Rückert, Christian, Timofeyev, Maxim, Kalinowski, Jörn, Kiemer, Alexandra K., and Luzhetskyy, Andriy
- Subjects
DEOXY sugars ,STREPTOMYCES ,LAKES ,NATURAL products ,ECOLOGICAL niche ,HYDROXYL group - Abstract
Natural products produced by bacteria found in unusual and poorly studied ecosystems, such as Lake Baikal, represent a promising source of new valuable drug leads. Here we report the isolation of a new Streptomyces sp. strain IB201691-2A from the Lake Baikal endemic mollusk Benedictia baicalensis. In the course of an activity guided screening three new angucyclines, named baikalomycins A–C, were isolated and characterized, highlighting the potential of poorly investigated ecological niches. Besides that, the strain was found to accumulate large quantities of rabelomycin and 5-hydroxy-rabelomycin, known shunt products in angucyclines biosynthesis. Baikalomycins A–C demonstrated varying degrees of anticancer activity. Rabelomycin and 5-hydroxy-rabelomycin further demonstrated antiproliferative activities. The structure elucidation showed that baikalomycin A is a modified aquayamycin with β-d-amicetose and two additional hydroxyl groups at unusual positions (6a and 12a) of aglycone. Baikalomycins B and C have alternating second sugars attached, α-l-amicetose and α-l-aculose, respectively. The gene cluster for baikalomycins biosynthesis was identified by genome mining, cloned using a transformation-associated recombination technique and successfully expressed in S. albus J1074. It contains a typical set of genes responsible for an angucycline core assembly, all necessary genes for the deoxy sugars biosynthesis, and three genes coding for the glycosyltransferase enzymes. Heterologous expression and deletion experiments allowed to assign the function of glycosyltransferases involved in the decoration of baikalomycins aglycone. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
15. Heterologous Expression of the Nybomycin Gene Cluster from the Marine Strain Streptomyces albus subsp. chlorinus NRRL B-24108
- Author
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Rodriguez Estevez, Marta, Myronovskyi, Maksym, Gummerlich, Nils, Nadmid, Suvd, and Luzhetskyy, Andrij
- Subjects
secondary metabolites ,streptomycetes ,nybomycin biosynthesis ,heterologous expression ,3. Good health ,nybomycin gene cluster
16. Heterologous Expression of the Nybomycin Gene Cluster from the Marine Strain Streptomyces albus subsp. chlorinus NRRL B-24108.
- Author
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Rodríguez Estévez, Marta, Myronovskyi, Maksym, Gummerlich, Nils, Nadmid, Suvd, and Luzhetskyy, Andriy
- Abstract
Streptomycetes represent an important reservoir of active secondary metabolites with potential applications in the pharmaceutical industry. The gene clusters responsible for their production are often cryptic under laboratory growth conditions. Characterization of these clusters is therefore essential for the discovery of new microbial pharmaceutical drugs. Here, we report the identification of the previously uncharacterized nybomycin gene cluster from the marine actinomycete Streptomyces albus subsp. chlorinus through its heterologous expression. Nybomycin has previously been reported to act against quinolone-resistant Staphylococcus aureus strains harboring a mutated gyrA gene but not against those with intact gyrA. The nybomycin-resistant mutants generated from quinolone-resistant mutants have been reported to be caused by a back-mutation in the gyrA gene that restores susceptibility to quinolones. On the basis of gene function assignment from bioinformatics analysis, we suggest a model for nybomycin biosynthesis. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
17. New natural products identified by combined genomics-metabolomics profiling of marine Streptomyces sp. MP131-18.
- Author
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Paulus, Constanze, Rebets, Yuriy, Tokovenko, Bogdan, Nadmid, Suvd, Terekhova, Larisa P., Myronovskyi, Maksym, Zotchev, Sergey B., Rückert, Christian, Braig, Simone, Zahler, Stefan, Kalinowski, Jörn, and Luzhetskyy, Andriy
- Abstract
Marine actinobacteria are drawing more and more attention as a promising source of new natural products. Here we report isolation, genome sequencing and metabolic profiling of new strain Streptomyces sp. MP131-18 isolated from marine sediment sample collected in the Trondheim Fjord, Norway. The 16S rRNA and multilocus phylogenetic analysis showed that MP131-18 belongs to the genus Streptomyces. The genome of MP131-18 isolate was sequenced, and 36 gene clusters involved in the biosynthesis of 18 different types of secondary metabolites were predicted using antiSMASH analysis. The combined genomics-metabolics profiling of the strain led to the identification of several new biologically active compounds. As a result, the family of bisindole pyrroles spiroindimicins was extended with two new members, spiroindimicins E and F. Furthermore, prediction of the biosynthetic pathway for unusual α-pyrone lagunapyrone isolated from MP131-18 resulted in foresight and identification of two new compounds of this family - lagunapyrones D and E. The diversity of identified and predicted compounds from Streptomyces sp. MP131-18 demonstrates that marine-derived actinomycetes are not only a promising source of new natural products, but also represent a valuable pool of genes for combinatorial biosynthesis of secondary metabolites. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
18. ChemInform Abstract: Hyalachelins A-C, Unusual Siderophores Isolated from the Terrestrial Myxobacterium Hyalangium minutum.
- Author
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Nadmid, Suvd, Plaza, Alberto, Lauro, Gianluigi, Garcia, Ronald, Bifulco, Giuseppe, and Mueller, Rolf
- Subjects
- *
SIDEROPHORES , *MYXOBACTERALES , *IRON chelates - Abstract
isolation, structure determination and iron chelating activities [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
19. Genomics-Guided Exploitation of Lipopeptide Diversity in Myxobacteria.
- Author
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Burgard C, Zaburannyi N, Nadmid S, Maier J, Jenke-Kodama H, Luxenburger E, Bernauer HS, and Wenzel SC
- Subjects
- Multigene Family, Myxococcales metabolism, Genomics, Lipopeptides metabolism, Myxococcales genetics
- Abstract
Analysis of 122 myxobacterial genome sequences suggested 16 strains as producers of the myxochromide lipopeptide family. Detailed sequence comparison of the respective mch biosynthetic gene clusters informed a genome-mining approach, ultimately leading to the discovery and chemical characterization of four novel myxochromide core types. The myxochromide megasynthetase is subject to evolutionary diversification, resulting in considerable structural diversity of biosynthesis products. The observed differences are due to the number, type, sequence, and configuration of the incorporated amino acids. The analysis revealed molecular details on how point mutations and recombination events led to structural diversity. It also gave insights into the evolutionary scenarios that have led to the emergence of mch clusters in different strains and genera of myxobacteria.
- Published
- 2017
- Full Text
- View/download PDF
20. Discovery of the first small-molecule CsrA-RNA interaction inhibitors using biophysical screening technologies.
- Author
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Maurer CK, Fruth M, Empting M, Avrutina O, Hoßmann J, Nadmid S, Gorges J, Herrmann J, Kazmaier U, Dersch P, Müller R, and Hartmann RW
- Subjects
- Escherichia coli Proteins chemistry, Nucleic Acids chemical synthesis, Nucleic Acids chemistry, Oligonucleotides chemical synthesis, Oligonucleotides chemistry, Protein Binding drug effects, RNA chemistry, RNA-Binding Proteins chemistry, Repressor Proteins chemistry, Small Molecule Libraries chemical synthesis, Small Molecule Libraries chemistry, Drug Evaluation, Preclinical methods, Escherichia coli Proteins metabolism, Nucleic Acids pharmacology, Oligonucleotides pharmacology, RNA metabolism, RNA-Binding Proteins metabolism, Repressor Proteins metabolism, Small Molecule Libraries pharmacology
- Abstract
Aim: CsrA is a global post-transcriptional regulator protein affecting mRNA translation and/or stability. Widespread among bacteria, it is essential for their full virulence and thus represents a promising anti-infective drug target. Therefore, we aimed at the discovery of CsrA-RNA interaction inhibitors. Results & methodology: We followed two strategies: a screening of small molecules (A) and an RNA ligand-based approach (B). Using surface plasmon resonance-based binding and fluorescence polarization-based competition assays, (A) yielded seven small-molecule inhibitors, among them MM14 (IC50 of 4 µM). (B) resulted in RNA-based inhibitor GGARNA (IC50 of 113 µM)., Conclusion: The first small-molecule inhibitors of the CsrA-RNA interaction were discovered exhibiting micromolar affinities. These hits represent tools to investigate the effects of CsrA-RNA interaction inhibition on bacterial virulence.
- Published
- 2016
- Full Text
- View/download PDF
21. Cystochromones, Unusual Chromone-Containing Polyketides from the Myxobacterium Cystobacter sp. MCy9104.
- Author
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Nadmid S, Plaza A, Garcia R, and Müller R
- Subjects
- Isotope Labeling, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Philippines, Polyketide Synthases metabolism, Chromones chemistry, Chromones isolation & purification, Myxococcales chemistry, Polyketides chemistry, Polyketides isolation & purification
- Abstract
Seven new chromone-containing polyketides, termed cystochromones A-G, were isolated from the myxobacterial strain Cystobacter sp. MCy9104. Their structures were elucidated using comprehensive NMR spectroscopy and HR-MS/MS. Cystochromones bear a pentadecyl moiety unusually attached at C-5 of the chromone ring. Moreover, isotope-labeled substrate feeding experiments and NMR analysis suggested a hybrid iso-fatty acid and polyketide synthase biosynthetic pathway for these secondary metabolites.
- Published
- 2015
- Full Text
- View/download PDF
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