28 results on '"Marshall CP"'
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2. Engineered dityrosine-bonding of the RSV prefusion F protein imparts stability and potency advantages.
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Gidwani SV, Brahmbhatt D, Zomback A, Bassie M, Martinez J, Zhuang J, Schulze J, McLellan JS, Mariani R, Alff P, Frasca D, Blomberg BB, Marshall CP, and Yondola MA
- Subjects
- Animals, Mice, Antibodies, Neutralizing, Antibodies, Viral, Tyrosine metabolism, Viral Fusion Proteins, Respiratory Syncytial Virus, Human, Tyrosine analogs & derivatives, Respiratory Syncytial Virus Infections prevention & control, Respiratory Syncytial Virus Vaccines
- Abstract
Viral fusion proteins facilitate cellular infection by fusing viral and cellular membranes, which involves dramatic transitions from their pre- to postfusion conformations. These proteins are among the most protective viral immunogens, but they are metastable which often makes them intractable as subunit vaccine targets. Adapting a natural enzymatic reaction, we harness the structural rigidity that targeted dityrosine crosslinks impart to covalently stabilize fusion proteins in their native conformations. We show that the prefusion conformation of respiratory syncytial virus fusion protein can be stabilized with two engineered dityrosine crosslinks (DT-preF), markedly improving its stability and shelf-life. Furthermore, it has 11X greater potency as compared with the DS-Cav1 stabilized prefusion F protein in immunogenicity studies and overcomes immunosenescence in mice with simply a high-dose formulation on alum., (© 2024. The Author(s).)
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- 2024
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3. Achieving Digital Catalysis: Strategies for Data Acquisition, Storage and Use.
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Marshall CP, Schumann J, and Trunschke A
- Abstract
Heterogeneous catalysis is an important area of research that generates data as intricate as the phenomenon itself. Complexity is inherently coupled to the function of the catalyst and advance in knowledge can only be achieved if this complexity is adequately captured and accounted for. This requires integration of experiment and theory, high data quality and quality control, close interdisciplinary collaboration, and sharing of data and metadata, which is facilitated by the application of joint data management strategies. This Viewpoint Article first discusses the potential of a digital transition in catalysis research. Then, a summary of the current status in terms of data infrastructure in heterogeneous catalysis is presented, defining the various types of (meta-) data, from catalyst synthesis to functional analysis. Finally, an already implemented working concept for local data acquisition and storage is introduced and the benefits and further development directions for catalysis data use and sharing are discussed., (© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)
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- 2023
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4. Prior respiratory syncytial virus infection reduces vaccine-mediated Th2-skewed immunity, but retains enhanced RSV F-specific CD8 T cell responses elicited by a Th1-skewing vaccine formulation.
- Author
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Eichinger KM, Kosanovich JL, Perkins TN, Oury TD, Petrovsky N, Marshall CP, Yondola MA, and Empey KM
- Subjects
- Mice, Animals, Antibodies, Viral, Lung, Antibodies, Neutralizing, Mice, Inbred BALB C, CD8-Positive T-Lymphocytes, Adjuvants, Immunologic, Respiratory Syncytial Virus Infections, Respiratory Syncytial Virus Vaccines, Respiratory Syncytial Virus, Human
- Abstract
Respiratory syncytial virus (RSV) remains the most common cause of lower respiratory tract infections in children worldwide. Development of a vaccine has been hindered due the risk of enhanced respiratory disease (ERD) following natural RSV exposure and the young age (<6 months) at which children would require protection. Risk factors linked to the development of ERD include poorly neutralizing antibody, seronegative status (never been exposed to RSV), and a Th2-type immune response. Stabilization of the more antigenic prefusion F protein (PreF) has reinvigorated hope for a protective RSV vaccine that elicits potent neutralizing antibody. While anecdotal evidence suggests that children and adults previously exposed to RSV (seropositive) are not at risk for developing vaccine associated ERD, differences in host immune responses in seropositive and seronegative individuals that may protect against ERD remain unclear. It is also unclear if vaccine formulations that skew towards Th1- versus Th2-type immune responses increase pathology or provide greater protection in seropositive individuals. Therefore, the goal of this work was to compare the host immune response to a stabilized prefusion RSV antigen formulated alone or with Th1 or Th2 skewing adjuvants in seronegative and seropositive BALB/c mice. We have developed a novel BALB/c mouse model whereby mice are first infected with RSV (seropositive) and then vaccinated during pregnancy to recapitulate maternal immunization strategies. Results of these studies show that prior RSV infection mitigates vaccine-mediated skewing by Th1- and Th2-polarizing adjuvants that was observed in seronegative animals. Moreover, vaccination with PreF plus the Th1-skewing adjuvant, Advax, increased RSV F85-93-specific CD8 T cells in both seronegative and seropositive dams. These data demonstrate the importance of utilizing seropositive animals in preclinical vaccine studies to assess both the safety and efficacy of candidate RSV vaccines., Competing Interests: NP is affiliated with Vaxine Pty Ltd., which hold commercial interests in Advax adjuvants. CM and MY are affiliated with Calder Biosciences, which holds commercial interests in the stabilized PreF protein. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Eichinger, Kosanovich, Perkins, Oury, Petrovsky, Marshall, Yondola and Empey.)
- Published
- 2022
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5. Prefusion RSV F Immunization Elicits Th2-Mediated Lung Pathology in Mice When Formulated With a Th2 (but Not a Th1/Th2-Balanced) Adjuvant Despite Complete Viral Protection.
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Eichinger KM, Kosanovich JL, Gidwani SV, Zomback A, Lipp MA, Perkins TN, Oury TD, Petrovsky N, Marshall CP, Yondola MA, and Empey KM
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- Animals, Antibodies, Neutralizing blood, Antibodies, Viral blood, Cytokines immunology, Cytokines metabolism, Disease Models, Animal, Female, Immunity, Humoral drug effects, Immunization, Immunogenicity, Vaccine drug effects, Lung immunology, Lung pathology, Lung virology, Mice, Inbred BALB C, Respiratory Syncytial Virus Infections immunology, Respiratory Syncytial Virus Infections pathology, Respiratory Syncytial Virus Infections virology, Respiratory Syncytial Viruses immunology, Respiratory Syncytial Viruses pathogenicity, Th1-Th2 Balance drug effects, Th2 Cells immunology, Th2 Cells metabolism, Th2 Cells virology, Adjuvants, Immunologic pharmacology, Aluminum Hydroxide pharmacology, Lung drug effects, Respiratory Syncytial Virus Infections prevention & control, Respiratory Syncytial Virus Vaccines pharmacology, Respiratory Syncytial Viruses drug effects, Th2 Cells drug effects, Viral Fusion Proteins pharmacology
- Abstract
Respiratory syncytial virus (RSV) remains the most common cause of lower respiratory tract infections in children worldwide. Development of a vaccine has been hindered by the risk of developing enhanced respiratory disease (ERD) upon natural exposure to the virus. Generation of higher quality neutralizing antibodies with stabilized pre-fusion F protein antigens has been proposed as a strategy to prevent ERD. We sought to test whether there was evidence of ERD in naïve BALB/c mice immunized with an unadjuvanted, stabilized pre-fusion F protein, and challenged with RSV line 19. We further sought to determine the extent to which formulation with a Th2-biased (alum) or a more Th1/Th2-balanced (Advax-SM) adjuvant influenced cellular responses and lung pathology. When exposed to RSV, mice immunized with pre-fusion F protein alone (PreF) exhibited increased airway eosinophilia and mucus accumulation. This was further exacerbated by formulation of PreF with Alum (aluminum hydroxide). Conversely, formulation of PreF with a Th1/Th2-balanced adjuvant, Advax-SM, not only suppressed RSV viral replication, but also inhibited airway eosinophilia and mucus accumulation. This was associated with lower numbers of lung innate lymphocyte cells (ILC2s) and CD4+ T cells producing IL-5+ or IL-13+ and increased IFNγ+ CD4+ and CD8+ T cells, in addition to RSV F-specific CD8+ T cells. These data suggest that in the absence of preimmunity, stabilized PreF antigens may still be associated with aberrant Th2 responses that induce lung pathology in response to RSV infection, and can be prevented by formulation with more Th1/Th2-balanced adjuvants that enhance CD4+ and CD8+ IFNγ+ T cell responses. This may support the use of stabilized PreF antigens with Th1/Th2-balanced adjuvants like, Advax-SM, as safer alternatives to alum in RSV vaccine candidates., (Copyright © 2020 Eichinger, Kosanovich, Gidwani, Zomback, Lipp, Perkins, Oury, Petrovsky, Marshall, Yondola and Empey.)
- Published
- 2020
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6. Nb-doped variants of high surface aluminium fluoride: a very strong bi-acidic solid catalyst.
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Marshall CP, Scholz G, Braun T, and Kemnitz E
- Abstract
A niobium doped high surface aluminium fluoride (HS-AlF3) catalyst was prepared, using an approach in which niobium doped aluminium hydroxide fluoride obtained via reaction of aqueous HF with the respective metal alkoxides in isopropanol is further fluorinated under flow of CHClF2 at 200 °C. A comparable procedure was used to synthesize a Nb-free variant for comparison. Both catalysts exhibit very strong Lewis acidic surface sites which are capable to activate strong carbon-halogen bonds at room temperature, just as the classical high-surface AlF3 (HS-AlF3), obtained by reacting aluminium isopropoxide with anhydrous HF, does. The catalysts were characterized by elemental analysis, P-XRD, MAS NMR spectroscopy, N2 adsorption, NH3-TPD, and pyridine photoacoustic FT-IR spectroscopy. In contrast to previously reported niobium doped HS-AlF3, which was prepared using anhydrous HF, the doped catalyst obtained via this aqueous HF-route shows excellent performance both in the isomerization of 1,2-dibromohexafluoropropane, a reaction that occurs only in the presence of the strongest Lewis acids, and in the cyclization of citronellal to isopulegol, a reaction which requires both, Lewis and Brønsted acid sites.
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- 2019
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7. Comparative study of the strongest solid Lewis acids known: ACF and HS-AlF 3 .
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Calvo B, Marshall CP, Krahl T, Kröhnert J, Trunschke A, Scholz G, Braun T, and Kemnitz E
- Abstract
Aluminium chlorofluoride (ACF) and high-surface aluminium fluoride (HS-AlF3) were analyzed by a set of characterization methods to assess their acidic properties: NH3-TPD, CO adsorption followed by DRIFTS, CD3CN-PAS-FTIR and MAS NMR spectroscopy after 15N-pyridine adsorption. Both catalysts contain very strong and medium-strong Lewis acid sites as confirmed by CO adsorption, in which small differences arise from the morphological properties of each catalyst, with ACF being microporous and HS-AlF3 mesoporous. Shifts of the CO vibration band of up to 77 cm-1 were observed, which account for very strong Lewis acid sites. In addition, very strong Lewis acid sites could be identified by CD3CN-PAS for both catalysts, exhibiting a shift of 95 cm-1 from free nitrile, the highest ever reported for a solid Lewis acid.
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- 2018
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8. Imaging of Vanadium in Microfossils: A New Potential Biosignature.
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Marshall CP, Olcott Marshall A, Aitken JB, Lai B, Vogt S, Breuer P, Steemans P, and Lay PA
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- Earth, Planet, Exobiology instrumentation, Geologic Sediments analysis, Geologic Sediments chemistry, Hot Temperature, Mars, Minerals analysis, Minerals chemistry, Molecular Imaging instrumentation, Molecular Imaging methods, Spectrometry, X-Ray Emission instrumentation, Synchrotrons, Vanadium chemistry, Exobiology methods, Fossils, Spectrometry, X-Ray Emission methods, Vanadium analysis
- Abstract
The inability to unambiguously distinguish the biogenicity of microfossil-like structures in the ancient rock record is a fundamental predicament facing Archean paleobiologists and astrobiologists. Therefore, novel methods for discriminating biological from nonbiological chemistries of microfossil-like structures are of the utmost importance in the search for evidence of early life on Earth. This, too, is important for the search for life on Mars by in situ analyses via rovers or sample return missions for future analysis here on Earth. Here, we report the application of synchrotron X-ray fluorescence imaging of vanadium, within thermally altered organic-walled microfossils of bona fide biological origin. From our data, we demonstrate that vanadium is present within microfossils of undisputable biological origin. It is well known in the organic geochemistry literature that elements such as vanadium are enriched and contained within crude oils, asphalts, and black shales that have been formed by diagenesis of biological organic material. It has been demonstrated that the origin of vanadium is due to the diagenetic alteration of precursor chlorophyll and heme porphyrin pigment compounds from living organisms. We propose that, taken together, microfossil-like morphology, carbonaceous composition, and the presence of vanadium could be used in tandem as a biosignature to ascertain the biogenicity of putative microfossil-like structures. Key Words: Microfossils-Synchrotron micro-X-ray fluorescence-Vanadium-Tetrapyrrole-Biosignature. Astrobiology 17, 1069-1076.
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- 2017
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9. Challenges Analyzing Gypsum on Mars by Raman Spectroscopy.
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Marshall CP and Olcott Marshall A
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- Calcium Sulfate analysis, Mars, Spectrum Analysis, Raman methods
- Abstract
Raman spectroscopy can provide chemical information about organic and inorganic substances quickly and nondestructively with little to no sample preparation, thus making it an ideal instrument for Mars rover missions. The ESA ExoMars planetary mission scheduled for launch in 2018 will contain a miniaturized Raman spectrometer (RLS) as part of the Pasteur payload operating with a continuous wave (CW) laser emitting at 532 nm. In addition, NASA is independently developing two miniaturized Raman spectrometers for the upcoming Mars 2020 rover mission, one of which is a remote (stand-off) Raman spectrometer that uses a pulse-gated 532 nm excitation system (SuperCam). The other is an in situ Raman spectrometer that employs a CW excitation laser emitting at 248.6 nm (SHERLOC). Recently, it has been shown with analyses by Curiosity that Gale Crater contains significantly elevated concentrations of transition metals such as Cr and Mn. Significantly, these transition metals are known to undergo fluorescence emission in the visible portion of the electromagnetic spectrum. Consequently, samples containing these metals could be problematic for the successful acquisition of fluorescence-free Raman spectra when using a CW 532 nm excitation source. Here, we investigate one analog environment, with a similar mineralogy and sedimentology to that observed in martian environments, as well as elevated Cr contents, to ascertain the best excitation wavelength to successfully collect fluorescence-free spectra from Mars-like samples. Our results clearly show that CW near-infrared laser excitation emitting at 785 nm is better suited to the collection of fluorescence-free Raman spectra than would be a CW laser emitting at 532 nm.
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- 2015
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10. Selection of Portable Spectrometers for Planetary Exploration: A Comparison of 532 nm and 785 nm Raman Spectroscopy of Reduced Carbon in Archean Cherts.
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Harris LV, Hutchinson IB, Ingley R, Marshall CP, Marshall AO, and Edwards HG
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- Carbon analysis, Planets, Spectrum Analysis, Raman methods
- Abstract
Knowledge and understanding of the martian environment has advanced greatly over the past two decades, beginning with NASA's return to the surface of Mars with the Pathfinder mission and its rover Sojourner in 1997 and continuing today with data being returned by the Curiosity rover. Reduced carbon, however, is yet to be detected on the martian surface, despite its abundance in meteorites originating from the planet. If carbon is detected on Mars, it could be a remnant of extinct life, although an abiotic source is much more likely. If the latter is the case, environmental carbonaceous material would still provide a source of carbon that could be utilized by microbial life for biochemical synthesis and could therefore act as a marker for potential habitats, indicating regions that should be investigated further. For this reason, the detection and characterization of reduced or organic carbon is a top priority for both the ESA/Roscosmos ExoMars rover, currently due for launch in 2018, and for NASA's Mars 2020 mission. Here, we present a Raman spectroscopic study of Archean chert Mars analog samples from the Pilbara Craton, Western Australia. Raman spectra were acquired with a flight-representative 532 nm instrument and a 785 nm instrument with similar operating parameters. Reduced carbon was successfully detected with both instruments; however, its Raman bands were detected more readily with 785 nm excitation, and the corresponding spectra exhibited superior signal-to-noise ratios and reduced background levels.
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- 2015
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11. Raman spectroscopy as a screening tool for ancient life detection on Mars.
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Marshall CP and Marshall AO
- Abstract
The search for sp(2)-bonded carbonaceous material is one of the major life detection strategies of the astrobiological exploration programmes of National Aeronautics and Space Administration and European Space Agency (ESA). The ESA ExoMars rover scheduled for launch in 2018 will include a Raman spectrometer with the goal of detecting sp(2)-bonded carbonaceous material as potential evidence of ancient life. However, sp(2)-bonded carbonaceous material will yield the same Raman spectra of well-developed G and D bands whether they are synthesized biologically or non-biologically. Therefore, the origin and source of sp(2)-bonded carbonaceous material cannot be elucidated by Raman spectroscopy alone. Here, we report the combined approach of Raman spectroscopy and gas chromatography-mass spectrometry biomarker analysis to Precambrian sedimentary rocks, which taken together, provides a promising new methodology for readily detecting and rapidly screening samples for immature organic material amenable to successful biomarker analysis., (© 2014 The Author(s) Published by the Royal Society. All rights reserved.)
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- 2014
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12. Raman hyperspectral imaging of microfossils: potential pitfalls.
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Marshall CP and Olcott Marshall A
- Subjects
- Ferric Compounds chemistry, Geologic Sediments chemistry, Graphite chemistry, Microspectrophotometry, Fossils, Spectrum Analysis, Raman methods
- Abstract
Initially, Raman spectroscopy was a specialized technique used by vibrational spectroscopists; however, due to rapid advancements in instrumentation and imaging techniques over the last few decades, Raman spectrometers are widely available at many institutions, allowing Raman spectroscopy to become a widespread analytical tool in mineralogy and other geological sciences. Hyperspectral imaging, in particular, has become popular due to the fact that Raman spectroscopy can quickly delineate crystallographic and compositional differences in 2-D and 3-D at the micron scale. Although this rapid growth of applications to the Earth sciences has provided great insight across the geological sciences, the ease of application as the instruments become increasingly automated combined with nonspecialists using this techique has resulted in the propagation of errors and misunderstandings throughout the field. For example, the literature now includes misassigned vibration modes, inappropriate spectral processing techniques, confocal depth of laser penetration incorrectly estimated into opaque crystalline solids, and a misconstrued understanding of the anisotropic nature of sp² carbons.
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- 2013
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13. Field-based Raman spectroscopic analyses of an Ordovician stromatolite.
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Olcott Marshall A and Marshall CP
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- Geography, Lichens, Missouri, Exobiology methods, Extraterrestrial Environment chemistry, Geologic Sediments chemistry, Minerals analysis, Spectrum Analysis, Raman methods
- Abstract
Raman spectrometers are being miniaturized for future life-detection missions on Mars. Field-portable Raman spectrometers, which have similar spectral parameters to the instruments being developed for Mars rovers, have been used to examine extant biosignatures, but they have not yet been used to examine ancient biosignatures. Here, a portable Raman spectrometer was used to analyze an Ordovician stromatolite at the outcrop, revealing both its mineralogy and the presence of sp² carbonaceous material. As stromatolites are often used as proof of the presence of life in Archean rocks and are searched for on Mars, the ability to analyze them in the field with no sample preparation has important ramifications for future Mars missions. However, these results also reveal that a 785 nm excitation source, rather than the 532 nm excitation source planned for future missions, might be a better choice in the search for fossil biosignatures.
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- 2013
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14. Raman spectroscopic documentation of Oligocene bladder stone.
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Rothschild BM, Martin LD, Anderson B, Marshall AO, and Marshall CP
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- Animals, Spectrum Analysis, Raman, X-Ray Diffraction, Fossils, Urinary Bladder Calculi chemistry
- Abstract
Discovery of a fossil (30-35 million-year-old) urolith from Early Oligocene deposits in northeastern Colorado provides the earliest evidence for the antiquity of bladder stones. These are spherical objects with a layered phosphatic structure and a hollow center. Each layer is composed of parallel crystals oriented perpendicular to the surface. Macroscopic and microscopic examination and X-ray diffraction analysis, along with comparison with 1,000 contemporary uroliths, were used as evidence in the confirmation of this diagnosis. Raman microspectroscopy verified the presence of organic material between layers, confirming its biologic origin.
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- 2013
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15. Multiple generations of carbon in the apex chert and implications for preservation of microfossils.
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Marshall AO, Emry JR, and Marshall CP
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- Spectrum Analysis, Raman, Western Australia, Carbon Compounds, Inorganic chemistry, Fossils, Geologic Sediments chemistry, Organic Chemicals chemistry
- Abstract
While the Apex chert is one of the most well-studied Archean deposits on Earth, its formation history is still not fully understood. Here, we present Raman spectroscopic data collected on the carbonaceous material (CM) present within the matrix of the Apex chert. These data, collected within a paragenetic framework, reveal two different phases of CM deposited within separate phases of quartz matrix. These multiple generations of CM illustrate the difficulty of searching for signs of life in these rocks and, by extension, in other Archean sequences.
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- 2012
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16. Hematite and carbonaceous materials in geological samples: a cautionary tale.
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Marshall CP and Marshall AO
- Subjects
- Fossils, Geologic Sediments chemistry, Planets, Carbon chemistry, Ferric Compounds chemistry, Geology methods, Spectrum Analysis, Raman methods
- Abstract
Over the last few decades Raman spectroscopy has been increasingly applied as an analytical tool in geoscience research. Raman spectroscopy is a powerful tool for geologists as it is non-destructive, requires little to no sample preparation, and can be undertaken in situ on various irreplaceable geological samples. Also, this technique is useful in the identification of minerals and geo-organic material. However, despite this ease of application, there are some facets of Raman spectroscopy data that can lead to erroneous interpretations. For instance, there is much confusion in the geological literature distinguishing the difference between the hematite vibrational mode at ca. 1320 cm(-1) and the disordered sp(2) carbonaceous material D band at 1340 cm(-1). Furthermore, geologists will often collect 2 spectra, one in the mineral finger print region (200-800 cm(-1)) and then a spectrum in the carbon first-order region (1000-1800 cm(-1)), rather than performing a full-region scan. This allows the misidentification of the hematite mode at 1320 cm(-1) as the D band from disordered carbonaceous material. Here we show that it is best practice for geologists to collect spectra between 200 and 1800 cm(-1) to better distinguish between hematite and disordered carbonaceous material, materials that often co-occur in geological samples., (Published by Elsevier B.V.)
- Published
- 2011
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17. The potential of Raman spectroscopy for the analysis of diagenetically transformed carotenoids.
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Marshall CP and Olcott Marshall A
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- Carotenoids chemistry, Carotenoids metabolism, Exobiology, Fossils, Hydrogenation, Life, Carotenoids analysis, Geological Phenomena, Spectrum Analysis, Raman
- Abstract
Recently, carotenoids have received much attention as target compounds for astrobiological prospecting principally because they are a group of molecules that display unique diagnostic Raman spectra that can be assigned to organic material of unequivocal biological origin. However, no work has been performed on assessing the potential of Raman spectroscopic detection of carotenoids from fossilized microbes. Here, we report the first Raman spectra acquired from 'perhydro' derivatives of beta-carotene and lycopene formed by hydrogenation of the polyene chain during diagenesis, resulting in much less specific fossil hydrocarbons such as beta-carotane and lycopane, respectively. We propose here that diagenetically altered carotenoids formed by hydrogenation reactions during the fossilization processes also provide unique diagnostic spectra that can be interpreted as a biological signature.
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- 2010
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18. Silicon nitride as a versatile growth substrate for microspectroscopic imaging and mapping of individual cells.
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Carter EA, Rayner BS, McLeod AI, Wu LE, Marshall CP, Levina A, Aitken JB, Witting PK, Lai B, Cai Z, Vogt S, Lee YC, Chen CI, Tobin MJ, Harris HH, and Lay PA
- Subjects
- 3T3-L1 Cells, Animals, Cell Adhesion, Cell Culture Techniques, Cell Differentiation, Cell Line, Mice, Microscopy instrumentation, Microscopy methods, Silicon Compounds chemistry, Spectrometry, X-Ray Emission, Spectroscopy, Fourier Transform Infrared instrumentation, Spectroscopy, Fourier Transform Infrared methods, Synchrotrons, Adipocytes cytology, Cell Proliferation, Microscopy, Fluorescence methods, Myocytes, Cardiac cytology, Silicon Compounds metabolism
- Abstract
Herein is described a general sampling protocol that includes culture, differentiation and fixing of cells in their preferred morphology on the one sample substrate (Si(3)N(4)) to enable subsequent diverse modern microspectroscopic analyses. The protocol enables unprecedented correlated and complementary information on the intracellular biochemistry of metabolic processes, diseases and their treatment, which offers the opportunity to revolutionize our understanding of cell and tissue biology at a molecular level. The culture of adherent cells onto inexpensive Si(3)N(4) membranes allows microspectroscopic analyses across the electromagnetic spectrum, from hard X-ray fluorescence (both XRF and XANES), through to visible and fluorescence light microscopies, and infrared microspectroscopy without substrate interference. Adherent mammalian cell lines (3T3-L1 adipocytes and H9c2 cardiac myocytes) illustrate the in vitro application of these protocols. The cells adhered strongly to Si(3)N(4) membranes and visually displayed normal proliferative and phenotypic growth; more importantly, rapid alcohol fixation of cells did not affect their structural integrity for subsequent analyses.
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- 2010
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19. Understanding the application of Raman spectroscopy to the detection of traces of life.
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Marshall CP, Edwards HG, and Jehlicka J
- Subjects
- Archaea metabolism, Carbon chemistry, Earth, Planet, Europe, Fossils, Geologic Sediments analysis, Hot Temperature, Lasers, Mars, Models, Chemical, United States, United States National Aeronautics and Space Administration, Exobiology instrumentation, Exobiology methods, Spectrum Analysis, Raman instrumentation, Spectrum Analysis, Raman methods
- Abstract
Investigating carbonaceous microstructures and material in Earth's oldest sedimentary rocks is an essential part of tracing the origins of life on our planet; furthermore, it is important for developing techniques to search for traces of life on other planets, for example, Mars. NASA and ESA are considering the adoption of miniaturized Raman spectrometers for inclusion in suites of analytical instrumentation to be placed on robotic landers on Mars in the near future to search for fossil or extant biomolecules. Recently, Raman spectroscopy has been used to infer a biological origin of putative carbonaceous microfossils in Early Archean rocks. However, it has been demonstrated that the spectral signature obtained from kerogen (of known biological origin) is similar to spectra obtained from many poorly ordered carbonaceous materials that arise through abiotic processes. Yet there is still confusion in the literature as to whether the Raman spectroscopy of carbonaceous materials can indeed delineate a signature of ancient life. Despite the similar nature in spectra, rigorous structural interrogation between the thermal alteration products of biological and nonbiological organic materials has not been undertaken. Therefore, we propose a new way forward by investigating the second derivative, deconvolution, and chemometrics of the carbon first-order spectra to build a database of structural parameters that may yield distinguishable characteristics between biogenic and abiogenic carbonaceous material. To place Raman spectroscopy as a technique to delineate a biological origin for samples in context, we will discuss what is currently accepted as a spectral signature for life; review Raman spectroscopy of carbonaceous material; and provide a historical overview of Raman spectroscopy applied to Archean carbonaceous materials, interpretations of the origin of the ancient carbonaceous material, and a future way forward for Raman spectroscopy.
- Published
- 2010
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20. Organic-walled microfossils in 3.2-billion-year-old shallow-marine siliciclastic deposits.
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Javaux EJ, Marshall CP, and Bekker A
- Subjects
- Acids, Bacteria chemistry, Bacteria cytology, Bacteria isolation & purification, Bacteria metabolism, Carbon analysis, Carbon chemistry, Carbon Isotopes, Eukaryotic Cells chemistry, Eukaryotic Cells cytology, History, Ancient, Oceans and Seas, Organic Chemicals chemistry, Reproducibility of Results, South Africa, Spectrum Analysis, Raman, Sunlight, Ecosystem, Fossils, Geologic Sediments microbiology, Organic Chemicals analysis, Phylogeny, Seawater microbiology
- Abstract
Although the notion of an early origin and diversification of life on Earth during the Archaean eon has received increasing support in geochemical, sedimentological and palaeontological evidence, ambiguities and controversies persist regarding the biogenicity and syngeneity of the record older than Late Archaean. Non-biological processes are known to produce morphologies similar to some microfossils, and hydrothermal fluids have the potential to produce abiotic organic compounds with depleted carbon isotope values, making it difficult to establish unambiguous traces of life. Here we report the discovery of a population of large (up to about 300 mum in diameter) carbonaceous spheroidal microstructures in Mesoarchaean shales and siltstones of the Moodies Group, South Africa, the Earth's oldest siliciclastic alluvial to tidal-estuarine deposits. These microstructures are interpreted as organic-walled microfossils on the basis of petrographic and geochemical evidence for their endogenicity and syngeneity, their carbonaceous composition, cellular morphology and ultrastructure, occurrence in populations, taphonomic features of soft wall deformation, and the geological context plausible for life, as well as a lack of abiotic explanation falsifying a biological origin. These are the oldest and largest Archaean organic-walled spheroidal microfossils reported so far. Our observations suggest that relatively large microorganisms cohabited with earlier reported benthic microbial mats in the photic zone of marginal marine siliciclastic environments 3.2 billion years ago.
- Published
- 2010
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21. Carotenoid analysis of halophilic archaea by resonance Raman spectroscopy.
- Author
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Marshall CP, Leuko S, Coyle CM, Walter MR, Burns BP, and Neilan BA
- Subjects
- Carotenoids analysis, Chromatography, High Pressure Liquid, Halobacteriales chemistry, Halobacteriales growth & development, Halobacterium salinarum chemistry, Halobacterium salinarum growth & development, Mars, Mass Spectrometry, Spectrum Analysis, Raman methods, United States, United States National Aeronautics and Space Administration, beta Carotene analysis, Exobiology, Halobacteriales isolation & purification, Halobacterium salinarum isolation & purification
- Abstract
Recently, halite and sulfate evaporate rocks have been discovered on Mars by the NASA rovers, Spirit and Opportunity. It is reasonable to propose that halophilic microorganisms could have potentially flourished in these settings. If so, biomolecules found in microorganisms adapted to high salinity and basic pH environments on Earth may be reliable biomarkers for detecting life on Mars. Therefore, we investigated the potential of Resonance Raman (RR) spectroscopy to detect biomarkers derived from microorganisms adapted to hypersaline environments. RR spectra were acquired using 488.0 and 514.5 nm excitation from a variety of halophilic archaea, including Halobacterium salinarum NRC-1, Halococcus morrhuae, and Natrinema pallidum. It was clearly demonstrated that RR spectra enhance the chromophore carotenoid molecules in the cell membrane with respect to the various protein and lipid cellular components. RR spectra acquired from all halophilic archaea investigated contained major features at approximately 1000, 1152, and 1505 cm(-1). The bands at 1505 cm(-1) and 1152 cm(-1) are due to in-phase C=C (nu(1) ) and C-C stretching ( nu(2) ) vibrations of the polyene chain in carotenoids. Additionally, in-plane rocking modes of CH(3) groups attached to the polyene chain coupled with C-C bonds occur in the 1000 cm(-1) region. We also investigated the RR spectral differences between bacterioruberin and bacteriorhodopsin as another potential biomarker for hypersaline environments. By comparison, the RR spectrum acquired from bacteriorhodopsin is much more complex and contains modes that can be divided into four groups: the C=C stretches (1600-1500 cm(-1)), the CCH in-plane rocks (1400-1250 cm(-1)), the C-C stretches (1250-1100 cm(-1)), and the hydrogen out-of-plane wags (1000-700 cm(-1)). RR spectroscopy was shown to be a useful tool for the analysis and remote in situ detection of carotenoids from halophilic archaea without the need for large sample sizes and complicated extractions, which are required by analytical techniques such as high performance liquid chromatography and mass spectrometry.
- Published
- 2007
- Full Text
- View/download PDF
22. Stromatolite reef from the Early Archaean era of Australia.
- Author
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Allwood AC, Walter MR, Kamber BS, Marshall CP, and Burch IW
- Subjects
- Australia, Carbonates chemistry, Geologic Sediments chemistry, History, Ancient, Paleontology, Seawater, Time Factors, Fossils, Geologic Sediments microbiology, Models, Biological
- Abstract
The 3,430-million-year-old Strelley Pool Chert (SPC) (Pilbara Craton, Australia) is a sedimentary rock formation containing laminated structures of probable biological origin (stromatolites). Determining the biogenicity of such ancient fossils is the subject of ongoing debate. However, many obstacles to interpretation of the fossils are overcome in the SPC because of the broad extent, excellent preservation and morphological variety of its stromatolitic outcrops--which provide comprehensive palaeontological information on a scale exceeding other rocks of such age. Here we present a multi-kilometre-scale palaeontological and palaeoenvironmental study of the SPC, in which we identify seven stromatolite morphotypes--many previously undiscovered--in different parts of a peritidal carbonate platform. We undertake the first morphotype-specific analysis of the structures within their palaeoenvironment and refute contemporary abiogenic hypotheses for their formation. Finally, we argue that the diversity, complexity and environmental associations of the stromatolites describe patterns that--in similar settings throughout Earth's history--reflect the presence of organisms.
- Published
- 2006
- Full Text
- View/download PDF
23. Omeprazole once or twice daily with clarithromycin and metronidazole for Helicobacter pylori.
- Author
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Chiba N and Marshall CP
- Subjects
- Anti-Ulcer Agents therapeutic use, Drug Administration Schedule, Female, Humans, Male, Middle Aged, Omeprazole therapeutic use, Anti-Bacterial Agents therapeutic use, Anti-Ulcer Agents administration & dosage, Clarithromycin therapeutic use, Helicobacter Infections drug therapy, Helicobacter pylori, Metronidazole therapeutic use, Omeprazole administration & dosage
- Abstract
Background: Triple therapy for one week with omeprazole, clarithromycin and metronidazole (OCM) is accepted worldwide as a first line therapy for Helicobacter pylori eradication. It is unclear whether omeprazole needs to be given once or twice daily., Objectives: To assess the efficacy and safety of these regimens in a single-centre, Canadian practice., Methods: Histologically proven H pylori-positive patients were treated for seven days with clarithromycin 250 mg bid and metronidazole 500 mg bid, and randomly allocated to omeprazole 20 mg either once or twice daily in this open, cohort study. Endoscopy with histology (two antrum and two body biopsies, Giemsa stain) was done four weeks or longer after the pills were completed to assess H pylori eradication., Results: Whether omeprazole was given once or twice daily, eradication was high and the same in both arms. All-patients-treated eradication was 85% (39 of 46 in the omeprazole once daily group and 41 of 48 in the omeprazole twice daily group) and intent-to-treat eradication was 80% (39 of 49 in the omeprazole once daily group and 41 of 51 in the omeprazole twice daily group). Side effects were frequently seen, suffered by 65% to 69% of patients treated. However, these were mild and compliance was high, with 94% of patients taking all of their pills. Mild side effects included loose stools, taste disturbance, nausea, headache and upper or lower gastrointestinal gas. Only one patient (1%) from the omeprazole once daily arm stopped taking metronidazole due to excessive perspiring., Conclusions: In this community practice, OCM triple therapy was effective whether omeprazole was given once or twice daily. For those with financial constraint, omeprazole 20 mg once daily can be considered. The regimens were well tolerated without serious adverse events.
- Published
- 2000
- Full Text
- View/download PDF
24. Purification and characterization of P47gag-crk expressed in insect cells.
- Author
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Matsuda M, Marshall CP, and Hanafusa H
- Subjects
- Animals, Antibodies, Monoclonal, Avian Sarcoma Viruses genetics, Blotting, Western, Cell Line, Chromatography, Gel, Electrophoresis, Polyacrylamide Gel, Insect Viruses genetics, Insecta, Oncogene Protein v-crk, Peptide Mapping, Protein-Tyrosine Kinases genetics, Protein-Tyrosine Kinases isolation & purification, Proto-Oncogene Proteins isolation & purification, Recombinant Proteins isolation & purification, Retroviridae Proteins isolation & purification, Oncogenes, Proto-Oncogene Proteins genetics, Retroviridae Proteins genetics
- Abstract
The crk oncogene product, P47gag-crk, was expressed and purified using a baculovirus expression system. Approximately 2-10 mg of P47gag-crk was produced in 10(9) insect cells infected with a recombinant baculovirus. Partially purified P47gag-crk was obtained by precipitation in a low salt buffer and gel filtration. A better purification of P47gag-crk was achieved by immunoaffinity chromatography, resulting in a single band by Coomassie Blue staining. The insect cells expressing P47gag-crk showed an increase in protein-phosphotyrosine content, which is a characteristic feature of crk-transformed cells. Moreover, like P47gag-crk produced in chicken or rat cells, P47gag-crk produced in insect cells associated in vitro with a tyrosine kinase and its substrates from Crk-3Y1 cells. Peptide mapping of P47gag-crk expressed in insect, rat, and chicken cells showed that similar sites were phosphorylated in these proteins. These data suggest that P47gag-crk expressed in insect cells is functional and will be useful for the further analysis of this protein.
- Published
- 1990
25. Allergy to ethylene oxide in chronic hemodialysis patients.
- Author
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Dolovich J, Marshall CP, Smith EK, Shimizu A, Pearson FC, Sugona MA, and Lee W
- Subjects
- Antibodies analysis, Antibody Specificity, Eosinophilia immunology, Humans, Immunoglobulin E metabolism, Radioallergosorbent Test, Skin Tests, Ethylene Oxide immunology, Hypersensitivity immunology, Renal Dialysis adverse effects
- Abstract
Almost a decade ago, a single chronic hemodialysis patient in Hamilton, Ontario, Canada, who was experiencing recurrent acute reactions during hemodialysis was found to have become allergic to ethylene oxide gas (EO). This observation recently provided a stimulus to examine the possibility that others exhibiting acute allergic-type reactions during hemodialysis might be similarly sensitized. Serum was obtained from 27 reacting patients and tested in a radioallergosorbent test (RAST) for antibodies to EO. The test was positive for 22 of these sera. EO-related specificity of the antibodies was confirmed. However, EO sensitization was not found in other hemodialysis patients with isolated eosinophilia. In a survey of the current Hamilton chronic hemodialysis population for EO-related antibodies, 9% had a positive allergy skin test and 12% had a positive RAST. The sensitized individuals had no distinctive symptoms. The lesser sensitivity of the skin test contrasts with usual findings in allergic individuals; however, the use of histamine and codeine in chronic hemodialysis and peritoneal dialysis patients might well explain a reduced sensitivity of the EO-related allergy skin test. Chronic peritoneal dialysis could not be invoked as a source of sensitization. None of these patients had a positive skin test or RAST for EO-related antibodies that could be attributed to peritoneal dialysis.
- Published
- 1984
- Full Text
- View/download PDF
26. Health insurance and urban college students.
- Author
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Marshall CP and Gold M
- Subjects
- Costs and Cost Analysis, New York, Insurance, Health, Insurance, Hospitalization, Student Health Services
- Published
- 1976
27. Reactions during hemodialysis caused by allergy to ethylene oxide gas sterilization.
- Author
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Marshall CP, Pearson FC, Sagona MA, Lee W, Wathen RL, Ward RA, and Dolovich J
- Subjects
- Gases, Humans, Hypersensitivity diagnosis, Hypersensitivity immunology, Radioallergosorbent Test, Ethylene Oxide immunology, Renal Dialysis adverse effects
- Abstract
In patients receiving long-term hemodialysis (HD), we have examined the presence of IgE-dependent sensitization to ethylene oxide (EO) gas, which is used for sterilization of disposable medical products including dialyzers. Serum was obtained from 25 patients who experienced acute allergic reactions during HD, five patients receiving HD with isolated eosinophilia, and 37 unselected patients receiving HD. Sera from 22 of 25 of the allergic reaction group and from five of 35 of the unselected group were demonstrated to contain IgE antibodies with specificity for EO. Corresponding IgG antibodies were also present. No such antibodies were detected in serum from normal controls or ragweed-allergic patients. The serum from one patient with isolated eosinophilia had a borderline elevated IgE antibody level. These results demonstrate a close relationship between the presence of IgE antibodies to EO and HD-related allergic reactions in this patient population.
- Published
- 1985
- Full Text
- View/download PDF
28. The planning and development of the New York City neighborhood family care centers.
- Author
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Marshall CP
- Subjects
- Comprehensive Health Care, Costs and Cost Analysis, Facility Design and Construction, Financing, Government, Government Agencies, Humans, New York City, Community Health Centers, Community Health Services, Health Facility Planning
- Abstract
Between 1967 and 1969 the New York City capital budget listed monies for the planning and construction of 15 new ambulatory care centers to provide comprehensive medical care to medically underserved areas of the city. Because of the urgent need, an effort was made in planning the centers to minimize the number of agency approvals. By adopting this approach, the appropriateness of the centers to their target populations became secondary to the process of negotiating the bureaucracy. In spite of this tactical decision, by 1970 construction had begun on only 1 center. This case study discusses the events from 1967 through 1969 that relate to the effort to expedite bureaucratic processing of the facilities.
- Published
- 1975
- Full Text
- View/download PDF
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