1. Spatial and single-nucleus transcriptomics decoding the molecular landscape and cellular organization of avian optic tectum
- Author
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Kuo Liao, Ya Xiang, Fubaoqian Huang, Maolin Huang, Wenbo Xu, Youning Lin, Pingfang Liao, Zishi Wang, Lin Yang, Xinmao Tian, Duoyuan Chen, Zhenlong Wang, Shiping Liu, and Zhenkun Zhuang
- Subjects
Biological sciences ,Neuroscience ,Molecular neuroscience ,Omics ,Transcriptomics ,Science - Abstract
Summary: The avian optic tectum (OT) has been studied for its diverse functions, yet a comprehensive molecular landscape at the cellular level has been lacking. In this study, we applied spatial transcriptome sequencing and single-nucleus RNA sequencing (snRNA-seq) to explore the cellular organization and molecular characteristics of the avian OT from two species: Columba livia and Taeniopygia guttata. We identified precise layer structures and provided comprehensive layer-specific signatures of avian OT. Furthermore, we elucidated diverse functions in different layers, with the stratum griseum periventriculare (SGP) potentially playing a key role in advanced functions of OT, like fear response and associative learning. We characterized detailed neuronal subtypes and identified a population of FOXG1+ excitatory neurons, resembling those found in the mouse neocortex, potentially involved in neocortex-related functions and expansion of avian OT. These findings could contribute to our understanding of the architecture of OT, shedding light on visual perception and multifunctional association.
- Published
- 2024
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