27 results on '"Malic S"'
Search Results
2. Rapid screening of the antimicrobial efficacy of Ag zeolites
- Author
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Tosheva, L., Belkhair, S., Gackowski, M., Malic, S., Al-Shanti, N., and Verran, J.
- Published
- 2017
- Full Text
- View/download PDF
3. The denture microbiome in health and disease: an exploration of a unique community.
- Author
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Redfern, J., Tosheva, L., Malic, S., Butcher, M., Ramage, G., and Verran, J.
- Subjects
COMMUNITIES ,DENTURES ,DENTAL plaque ,CANDIDA albicans ,INFECTION prevention ,SYSTEMIC risk (Finance) - Abstract
The United Nations suggests the global population of denture wearers (an artificial device that acts as a replacement for teeth) is likely to rise significantly by the year 2050. Dentures become colonized by microbial biofilms, the composition of which is influenced by complex factors such as patient's age and health, and the nature of the denture material. Since colonization (and subsequent biofilm formation) by some micro‐organisms can significantly impact the health of the denture wearer, the study of denture microbiology has long been of interest to researchers. The specific local and systemic health risks of denture plaque are different from those of dental plaque, particularly with respect to the presence of the opportunist pathogen Candida albicans and various other nonoral opportunists. Here, we reflect on advancements in our understanding of the relationship between micro‐organisms, dentures, and the host, and highlight how our growing knowledge of the microbiome, biofilms, and novel antimicrobial technologies may better inform diagnosis, treatment, and prevention of denture‐associated infections, thereby enhancing the quality and longevity of denture wearers. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
4. Methylcellulose hydrogel with Melissa officinalis essential oil as a treatment of oral candidosis
- Author
-
Serra, E, Saubade, Fabien, Ligorio, C, Whitehead, Kathryn, Sloan, A, Williams, David, Hidalgo-Bastida, A, Verran, J, and Malic, S
- Abstract
Candida spp. are the most prevalent fungi of the human microbiota and are opportunistic pathogens that can cause oral candidiasis. Management of such infections is limited due to the low number of antifungal drugs available, their relatively high toxicity and the emergence of antifungal resistance. Therefore, much interest in the antimicrobial potential of natural compounds has recently been evident. The use of hydrogels in the delivery of biocides has been explored due to their biocompatibility, ease with drug encapsulation, and due to their potential to confer mechanical and structural properties similar to biological tissue. Methylcellulose hydrogels (10% (w/v)) with 1% (v/v) and 2% (v/v) Melissa officinalis oil were synthesised. The rheological properties and gelation time of the hydrogels were evaluated. Antimicrobial action, the antifungal potential and ability to displace Candida were determined. Rheological tests revealed that the hydrogel jellified in three minutes at 37 °C. Loaded hydrogels successfully inhibited Candida albicans growth as evident by zone of inhibition and time-kill assays. A significant reduction in retained C. albicans was demonstrated with the hydrogel at 2% Melissa officinalis concentration. This work demonstrated that an essential oil-loaded hydrogel had the potential to provide a novel antimicrobial therapy for the treatment of oral candidiasis.
- Published
- 2020
5. Characterization of Candida albicans infection of an in vitro oral epithelial model using confocal laser scanning microscopy
- Author
-
Malic, S., Hill, K. E., Ralphs, J. R., Hayes, A., Thomas, D. W., Potts, A. J., and Williams, D. W.
- Published
- 2007
6. The N14 anti-afamin antibody Fab: A rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling
- Author
-
Naschberger A, Bg, Fürnrohr, Lenac Rovis T, Malic S, Scheffzek K, Dieplinger H, and Bernhard Rupp
- Subjects
ANTIBODY - Abstract
The monoclonal antibody N14 is used as a detection antibody in ELISA kits for the human glycoprotein afamin, a member of the albumin family, which has recently gained interest in the capture and stabilization of Wnt signalling proteins, and for its role in metabolic syndrome and papillary thyroid carcinoma. As a rare occurrence, the N14 Fab is N-glycosylated at Asn26L at the onset of the VL1 antigen-binding loop, with the α-1–6 core fucosylated complex glycan facing out of the L1 complementarity-determining region. The crystal structures of two non-apparent (pseudo) isomorphous crystals of the N14 Fab were analyzed, which differ significantly in the elbow angles, thereby cautioning against the overinterpretation of domain movements upon antigen binding. In addition, the map quality at 1.9 Å resolution was sufficient to crystallographically re-sequence the variable VL and VH domains and to detect discrepancies in the hybridoma-derived sequence. Finally, a conservatively refined parsimonious model is presented and its statistics are compared with those from a less conservatively built model that has been modelled more enthusiastically. Improvements to the PDB validation reports affecting ligands, clashscore and buried surface calculations are suggested.
- Published
- 2016
7. In vitro interaction of chronic wound bacteria in biofilms.
- Author
-
Malic, S., Hill, K.E., Playle, R., Thomas, D.W., and Williams, D.W.
- Abstract
Objective: To use in vitro biofilm models of wound bacterial isolates and compare the biofilms produced for different combinations of wound bacterial species. Method: In vitro biofilms, generated by Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus oralis and Micrococcus luteus in microtitre plates and a constant depth film fermentor (CDFF), were studied. The tested isolates all originated from chronic venous leg ulcers. Biofilms of individual and dual combinations of these species were generated in microtitre plate wells at 37°C for 24-96 hours and also in the CDFF for 7 days. The extent of biofilm formation from these systems was then measured using crystal violet staining and/or total viable counts. Results: All the chronic wound bacteria formed biofilms (both individually and in mixed culture) in these models. In mixed species microtitre plate biofilms, both P. aeruginosa and S. aureus appeared to antagonise biofilm formation by S. oralis and M. luteus, with P. aeruginosa completely inhibiting the growth of these organisms. Similar effects were evident in the CDFF model, when all four bacterial species were added simultaneously, with M. luteus being 'out-competed' by the other organisms present and occurring at numbers at the limits of detection; however, there was an apparent increase in the numbers of S. oralis compared with its single culture equivalent. Conclusion: The study highlighted differences in biofilm formation ability for the tested species in both closed and open model systems. Using dual species biofilms, distinct species antagonism was observed with apparent antagonism of pathogenic species over 'commensal' ones. Such a finding provides insight into possible bacterial interactions during development of 'non-healing' wound biofilms. [ABSTRACT FROM AUTHOR]
- Published
- 2011
8. Antigenic determinants driving serogroup-specific antibody response to Neisseria meningitidis C, W, and Y capsular polysaccharides: Insights for rational vaccine design.
- Author
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Pietri GP, Bertuzzi S, Karnicar K, Unione L, Lisnic B, Malic S, Miklic K, Novak M, Calloni I, Santini L, Usenik A, Romano MR, Adamo R, Jonjic S, Turk D, Jiménez-Barbero J, and Lenac Rovis T
- Subjects
- Antibodies, Bacterial immunology, Epitopes immunology, Epitopes chemistry, Animals, Mice, Humans, Bacterial Capsules immunology, Bacterial Capsules chemistry, Antibody Formation immunology, Antibodies, Monoclonal immunology, Antibodies, Monoclonal chemistry, Serogroup, Neisseria meningitidis immunology, Neisseria meningitidis chemistry, Meningococcal Vaccines immunology, Meningococcal Vaccines chemistry, Polysaccharides, Bacterial immunology, Polysaccharides, Bacterial chemistry
- Abstract
Meningococcal glycoconjugate vaccines sourced from capsular polysaccharides (CPSs) of pathogenic Neisseria meningitidis strains are well-established measures to prevent meningococcal disease. However, the exact structural factors responsible for antibody recognition are not known. CPSs of Neisseria meningitidis serogroups Y and W differ by a single stereochemical center, yet they evoke specific immune responses. Herein, we developed specific monoclonal antibodies (mAbs) targeting serogroups C, Y, and W and evaluated their ability to kill bacteria. We then used these mAbs to dissect structural elements responsible for carbohydrate-protein interactions. First, Men oligosaccharides were screened against the mAbs using ELISA to select putative lengths representing the minimal antigenic determinant. Next, molecular interaction features between the mAbs and serogroup-specific sugar fragments were elucidated using STD-NMR. Moreover, X-ray diffraction data with the anti-MenW CPS mAb enabled the elucidation of the sugar-antibody binding mode. Our findings revealed common traits in the epitopes of all three sialylated serogroups. The minimal binding epitopes typically comprise five to six repeating units. Moreover, the O-acetylation of the neuraminic acid moieties was fundamental for mAb binding. These insights hold promise for the rational design of optimized meningococcal oligosaccharides, opening new avenues for novel production methods, including chemical or enzymatic approaches., Competing Interests: Declaration of competing interest LS, MRR and RA are employee of GSK. GPP was a PhD fellow of MEDRI and performed a secondment in GSK during his doctorate. Menjugate, Menveo, Menitorix, Menhibrix are registered trademarks from GSK Vaccines; Menactra is a registered trademark from Sanofi Pasteur; Nimenrix is a registered trademark from Pfizer; NeisVac is a registerd trademark from North American Vaccine Inc.- Baxter Bioscience., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
9. Epitope Recognition of a Monoclonal Antibody Raised against a Synthetic Glycerol Phosphate Based Teichoic Acid.
- Author
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Berni F, Kalfopoulou E, Gimeno Cardells AM, Carboni F, van der Es D, Romero-Saavedra F, Laverde D, Miklic K, Malic S, Rovis TL, Jonjic S, Ali S, Overkleeft HS, Hokke CH, van Diepen A, Adamo R, Jiménez-Barbero J, van der Marel GA, Huebner J, and Codée JDC
- Subjects
- Animals, Antibodies, Monoclonal, Murine-Derived immunology, Enzyme-Linked Immunosorbent Assay, Epitopes chemistry, Epitopes immunology, Glycerophosphates chemistry, Glycerophosphates immunology, Mice, Nuclear Magnetic Resonance, Biomolecular, Protein Binding, Teichoic Acids chemistry, Teichoic Acids immunology, Antibodies, Monoclonal, Murine-Derived metabolism, Epitopes metabolism, Glycerophosphates metabolism, Teichoic Acids metabolism
- Abstract
Glycerol phosphate (GroP)-based teichoic acids (TAs) are antigenic cell-wall components found in both enterococcus and staphylococcus species. Their immunogenicity has been explored using both native and synthetic structures, but no details have yet been reported on the structural basis of their interaction with antibodies. This work represents the first case study in which a monoclonal antibody, generated against a synthetic TA, was developed and employed for molecular-level binding analysis using TA microarrays, ELISA, SPR-analyses, and STD-NMR spectroscopy. Our findings show that the number and the chirality of the GroP residues are crucial for interaction and that the sugar appendage contributes to the presentation of the backbone to the binding site of the antibody.
- Published
- 2021
- Full Text
- View/download PDF
10. Phenotypic and Genotypic Characterization of Novel Polyvalent Bacteriophages With Potent In Vitro Activity Against an International Collection of Genetically Diverse Staphylococcus aureus .
- Author
-
Whittard E, Redfern J, Xia G, Millard A, Ragupathy R, Malic S, and Enright MC
- Subjects
- Genotype, Humans, Staphylococcus, Staphylococcus Phages genetics, Staphylococcus aureus genetics, Bacteriophages genetics, Methicillin-Resistant Staphylococcus aureus genetics, Staphylococcal Infections
- Abstract
Phage therapy recently passed a key milestone with success of the first regulated clinical trial using systemic administration. In this single-arm non-comparative safety study, phages were administered intravenously to patients with invasive Staphylococcus aureus infections with no adverse reactions reported. Here, we examined features of 78 lytic S. aureus phages, most of which were propagated using a S. carnosus host modified to be broadly susceptible to staphylococcal phage infection. Use of this host eliminates the threat of contamination with staphylococcal prophage - the main vector of S. aureus horizontal gene transfer. We determined the host range of these phages against an international collection of 185 S. aureus isolates with 56 different multilocus sequence types that included multiple representatives of all epidemic MRSA and MSSA clonal complexes. Forty of our 78 phages were able to infect > 90% of study isolates, 15 were able to infect > 95%, and two could infect all 184 clinical isolates, but not a phage-resistant mutant generated in a previous study. We selected the 10 phages with the widest host range for in vitro characterization by planktonic culture time-kill analysis against four isolates:- modified S. carnosus strain TM300H, methicillin-sensitive isolates D329 and 15981, and MRSA isolate 252. Six of these 10 phages were able to rapidly kill, reducing cell numbers of at least three isolates. The four best-performing phages, in this assay, were further shown to be highly effective in reducing 48 h biofilms on polystyrene formed by eight ST22 and eight ST36 MRSA isolates. Genomes of 22 of the widest host-range phages showed they belonged to the Twortvirinae subfamily of the order Caudovirales in three main groups corresponding to Silviavirus , and two distinct groups of Kayvirus . These genomes assembled as single-linear dsDNAs with an average length of 140 kb and a GC content of c. 30%. Phages that could infect > 96% of S. aureus isolates were found in all three groups, and these have great potential as therapeutic candidates if, in future studies, they can be formulated to maximize their efficacy and eliminate emergence of phage resistance by using appropriate combinations., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Whittard, Redfern, Xia, Millard, Ragupathy, Malic and Enright.)
- Published
- 2021
- Full Text
- View/download PDF
11. Methylcellulose Hydrogel with Melissa officinalis Essential Oil as a Potential Treatment for Oral Candidiasis.
- Author
-
Serra E, Saubade F, Ligorio C, Whitehead K, Sloan A, Williams DW, Hidalgo-Bastida A, Verran J, and Malic S
- Abstract
Candida spp. are the most prevalent fungi of the human microbiota and are opportunistic pathogens that can cause oral candidiasis. Management of such infections is limited due to the low number of antifungal drugs available, their relatively high toxicity and the emergence of antifungal resistance. Therefore, much interest in the antimicrobial potential of natural compounds has recently been evident. The use of hydrogels in the delivery of biocides has been explored due to their biocompatibility, ease with drug encapsulation, and due to their potential to confer mechanical and structural properties similar to biological tissue. Methylcellulose hydrogels (10% ( w / v )) with 1% ( v / v ) and 2% ( v / v ) Melissa officinalis oil were synthesised. The rheological properties and gelation time of the hydrogels were evaluated. Antimicrobial action, the antifungal potential and ability to displace Candida were determined. Rheological tests revealed that the hydrogel jellified in three minutes at 37 °C. Loaded hydrogels successfully inhibited Candida albicans growth as evident by zone of inhibition and time-kill assays. A significant reduction in retained C. albicans was demonstrated with the hydrogel at 2% Melissa officinalis concentration. This work demonstrated that an essential oil-loaded hydrogel had the potential to provide a novel antimicrobial therapy for the treatment of oral candidiasis.
- Published
- 2020
- Full Text
- View/download PDF
12. Development of Opsonic Mouse Monoclonal Antibodies against Multidrug-Resistant Enterococci.
- Author
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Kalfopoulou E, Laverde D, Miklic K, Romero-Saavedra F, Malic S, Carboni F, Adamo R, Lenac Rovis T, Jonjic S, and Huebner J
- Subjects
- Animals, Antigens, Bacterial immunology, Bacterial Capsules chemistry, Mice, Polysaccharides immunology, Antibodies, Monoclonal immunology, Drug Resistance, Microbial, Enterococcus faecalis immunology, Enterococcus faecium immunology, Immunotherapy methods, Opsonin Proteins immunology
- Abstract
Multidrug-resistant enterococci are major causes of hospital-acquired infections. Immunotherapy with monoclonal antibodies (MAbs) targeting bacterial antigens would be a valuable treatment option in this setting. Here, we describe the development of two MAbs through hybridoma technology that target antigens from the most clinically relevant enterococcal species. Diheteroglycan (DHG), a well-characterized capsular polysaccharide of Enterococcus faecalis , and the secreted antigen A (SagA), an immunogenic protein from Enterococcus faecium , are both immunogens that have been proven to raise opsonic and cross-reactive antibodies against enterococcal strains. For this purpose, a conjugated form of the native DHG with SagA was used to raise the antibodies in mice, while enzyme-linked immunosorbent assay and opsonophagocytic assay were combined in the selection process of hybridoma cells producing immunoreactive and opsonic antibodies targeting the selected antigens. From this process, two highly specific IgG1(κ) MAbs were obtained, one against the polysaccharide (DHG.01) and one against the protein (SagA.01). Both MAbs exhibited good opsonic killing against the target bacterial strains: DHG.01 showed 90% killing against E. faecalis type 2, and SagA.01 showed 40% killing against E. faecium 11231/6. In addition, both MAbs showed cross-reactivity toward other E. faecalis and E. faecium strains. The sequences from the variable regions of the heavy and light chains were reconstructed in expression vectors, and the activity of the MAbs upon expression in eukaryotic cells was confirmed with the same immunological assays. In summary, we identified two opsonic MAbs against enterococci which could be used for therapeutic or prophylactic approaches against enterococcal infections., (Copyright © 2019 Kalfopoulou et al.)
- Published
- 2019
- Full Text
- View/download PDF
13. Zeolite-embedded silver extends antimicrobial activity of dental acrylics.
- Author
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Malic S, Rai S, Redfern J, Pritchett J, Liauw CM, Verran J, and Tosheva L
- Subjects
- Acrylic Resins chemistry, Anti-Infective Agents chemistry, Candida albicans drug effects, Candida albicans growth & development, Dental Materials chemistry, Dentures microbiology, Drug Liberation, Fusobacterium nucleatum drug effects, Fusobacterium nucleatum growth & development, Humans, Kinetics, Silver chemistry, Staphylococcus aureus drug effects, Staphylococcus aureus growth & development, Streptococcus mutans drug effects, Streptococcus mutans growth & development, Acrylic Resins pharmacology, Anti-Infective Agents pharmacology, Delayed-Action Preparations, Dental Materials pharmacology, Silver pharmacology, Zeolites chemistry
- Abstract
The insertion of prosthetic devices into the oral cavity affects the oral microflora and results in accumulation of microorganisms on the prosthetic surface. Such fouling of denture surfaces can lead to a number of oral diseases and consequently to the replacement of the denture. Here, we report the post-synthesis introduction of silver in zeolite-loaded dental acrylic (DAZ) resins that does not influence the mechanical or aesthetic properties of the DA resins, and provides them with a long-term antimicrobial activity. Na-FAU zeolite (2 wt%) was incorporated into DA resin, which was conventionally processed and cut into 10 mm × 20 mm × 3 mm coupons. The Na
+ in the zeolite was then exchanged with Ag+ via immersion of the DAZ coupons in 0.01 M AgNO3 solution to obtain DAZ/Ag-treated coupons used in antimicrobial tests. Antimicrobial tests showed that the DAZ/Ag-treated coupons were active against Candida albicans (a reference and a clinically relevant strain), Streptococcus mutans and Fusobacterium nucleatum. Ag leaching tests on the Ag-charged coupons at 1, 2, 3, 4, 7, 14, 30 and 45 days of incubation in distilled water at 37 °C, indicated sustained release of silver. Antimicrobial tests using a reference Candida albicans strain showed that the leached coupons retained antimicrobial activity after 45 days immersion in distilled water, but, after 60 days incubation no antimicrobial activity was observed. Cytotoxicity assay results indicated that the DAZ/Ag-treated coupons showed no additional cytotoxicity compared to neat dental acrylic coupons., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
14. Expression, Purification, and Biochemical Characterization of Human Afamin.
- Author
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Altamirano A, Naschberger A, Fürnrohr BG, Saldova R, Struwe WB, Jennings PM, Millán Martín S, Malic S, Plangger I, Lechner S, Pisano R, Peretti N, Linke B, Aguiar MM, Fresser F, Ritsch A, Lenac Rovis T, Goode C, Rudd PM, Scheffzek K, Rupp B, and Dieplinger H
- Subjects
- Amino Acid Sequence, Animals, Antibodies, Monoclonal metabolism, Antigen-Antibody Complex metabolism, CHO Cells, Carrier Proteins genetics, Carrier Proteins metabolism, Cloning, Molecular, Cricetulus, Escherichia coli genetics, Escherichia coli metabolism, Gene Expression, Genetic Vectors chemistry, Genetic Vectors metabolism, Glycoproteins genetics, Glycoproteins metabolism, Glycosylation, HEK293 Cells, Humans, Immunoglobulin Fab Fragments metabolism, Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase chemistry, Polysaccharides chemistry, Polysaccharides metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Serum Albumin, Human genetics, Serum Albumin, Human metabolism, Antibodies, Monoclonal chemistry, Antigen-Antibody Complex chemistry, Carrier Proteins chemistry, Glycoproteins chemistry, Immunoglobulin Fab Fragments chemistry, Protein Processing, Post-Translational, Serum Albumin, Human chemistry
- Abstract
Afamin is an 87 kDa glycoprotein with five predicted N-glycosylation sites. Afamin's glycan abundance contributes to conformational and chemical inhomogeneity presenting great challenges for molecular structure determination. For the purpose of studying the structure of afamin, various forms of recombinantly expressed human afamin (rhAFM) with different glycosylation patterns were thus created. Wild-type rhAFM and various hypoglycosylated forms were expressed in CHO, CHO-Lec1, and HEK293T cells. Fully nonglycosylated rhAFM was obtained by transfection of point-mutated cDNA to delete all N-glycosylation sites of afamin. Wild-type and hypo/nonglycosylated rhAFM were purified from cell culture supernatants by immobilized metal ion affinity and size exclusion chromatography. Glycan analysis of purified proteins demonstrated differences in micro- and macro-heterogeneity of glycosylation enabling the comparison between hypoglycosylated, wild-type rhAFM, and native plasma afamin. Because antibody fragments can work as artificial chaperones by stabilizing the structure of proteins and consequently enhance the chance for successful crystallization, we incubated a Fab fragment of the monoclonal anti-afamin antibody N14 with human afamin and obtained a stoichiometric complex. Subsequent results showed sufficient expression of various partially or nonglycosylated forms of rhAFM in HEK293T and CHO cells and revealed that glycosylation is not necessary for expression and secretion.
- Published
- 2018
- Full Text
- View/download PDF
15. Antifungal Activity of Commercial Essential Oils and Biocides against Candida Albicans.
- Author
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Serra E, Hidalgo-Bastida LA, Verran J, Williams D, and Malic S
- Abstract
Management of oral candidosis, most frequently caused by Candida albicans , is limited due to the relatively low number of antifungal drugs and the emergence of antifungal tolerance. In this study, the antifungal activity of a range of commercial essential oils, two terpenes, chlorhexidine and triclosan was evaluated against C. albicans in planktonic and biofilm form. In addition, cytotoxicity of the most promising compounds was assessed using murine fibroblasts and expressed as half maximal inhibitory concentrations (IC50). Antifungal activity was determined using a broth microdilution assay. The minimum inhibitory concentration (MIC) was established against planktonic cells cultured in a range of concentrations of the test agents. The minimal biofilm eradication concentration (MBEC) was determined by measuring re-growth of cells after pre-formed biofilm was treated for 24 h with the test agents. All tested commercial essential oils demonstrated anticandidal activity (MICs from 0.06% ( v / v ) to 0.4% ( v / v )) against planktonic cultures, with a noticeable increase in resistance exhibited by biofilms (MBECs > 1.5% ( v / v )). The IC50s of the commercial essential oils were lower than the MICs, while a one hour application of chlorhexidine was not cytotoxic at concentrations lower than the MIC. In conclusion, the tested commercial essential oils exhibit potential as therapeutic agents against C. albicans , although host cell cytotoxicity is a consideration when developing these new treatments., Competing Interests: The authors declare no conflicts of interest.
- Published
- 2018
- Full Text
- View/download PDF
16. The N14 anti-afamin antibody Fab: a rare V L 1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling.
- Author
-
Naschberger A, Fürnrohr BG, Lenac Rovis T, Malic S, Scheffzek K, Dieplinger H, and Rupp B
- Subjects
- Animals, Antigen-Antibody Complex, Complementarity Determining Regions, Crystallography, X-Ray, Glycosylation, Humans, Immunoglobulin Variable Region chemistry, Immunoglobulin Variable Region immunology, Mice, Models, Molecular, Serum Albumin, Human, Antibodies, Monoclonal chemistry, Antibodies, Monoclonal immunology, Carrier Proteins immunology, Glycoproteins immunology, Immunoglobulin Fab Fragments chemistry, Immunoglobulin Fab Fragments immunology, Serum Albumin immunology
- Abstract
The monoclonal antibody N14 is used as a detection antibody in ELISA kits for the human glycoprotein afamin, a member of the albumin family, which has recently gained interest in the capture and stabilization of Wnt signalling proteins, and for its role in metabolic syndrome and papillary thyroid carcinoma. As a rare occurrence, the N14 Fab is N-glycosylated at Asn26L at the onset of the V
L 1 antigen-binding loop, with the α-1-6 core fucosylated complex glycan facing out of the L1 complementarity-determining region. The crystal structures of two non-apparent (pseudo) isomorphous crystals of the N14 Fab were analyzed, which differ significantly in the elbow angles, thereby cautioning against the overinterpretation of domain movements upon antigen binding. In addition, the map quality at 1.9 Å resolution was sufficient to crystallographically re-sequence the variable VL and VH domains and to detect discrepancies in the hybridoma-derived sequence. Finally, a conservatively refined parsimonious model is presented and its statistics are compared with those from a less conservatively built model that has been modelled more enthusiastically. Improvements to the PDB validation reports affecting ligands, clashscore and buried surface calculations are suggested.- Published
- 2016
- Full Text
- View/download PDF
17. Recent trends in 1,2,3-Triazolo-nucleosides as promising anti-infective and anticancer agents.
- Author
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Raic-Malic S and Mescic A
- Subjects
- Anti-Infective Agents chemical synthesis, Anti-Infective Agents pharmacology, Antineoplastic Agents chemical synthesis, Antineoplastic Agents toxicity, Apoptosis drug effects, Bacteria drug effects, Click Chemistry, Fungi drug effects, Humans, Hydrolases antagonists & inhibitors, Hydrolases metabolism, Nucleosides chemical synthesis, Nucleosides pharmacology, Viruses drug effects, Anti-Infective Agents chemistry, Antineoplastic Agents chemistry, Nucleosides chemistry, Triazoles chemistry
- Abstract
The concept of click chemistry represented by the formation of the 1,2,3-triazole core has found wide application in drug discovery, particularly in the early discovery phases and the lead optimization process. 1,2,3-Triazoles ha ve attracted considerable attention in recent years because of their wide range of biological activities against various viruses, malignant cells, microorganisms and their inhibitory activities against several enzymes. This review emphasizes the recent advances on diverse and potent biological profiles of 1,2,3-triazolo-nucleosides, along with emerging application of click chemistry in their synthesis, and their perspective in the development of new bioactive chemical entities in the future. The work is primarily addressed to antiviral, antimicrobial and anticancer potency of this important structural motifs in which the 1,2,3-triazole ring acts as a nucleobase surrogate or is linked to a nucleobase or a sugar/sugar mimic moiety.
- Published
- 2015
- Full Text
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18. Novel Nystatin A₁ derivatives exhibiting low host cell toxicity and antifungal activity in an in vitro model of oral candidosis.
- Author
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Boros-Majewska J, Salewska N, Borowski E, Milewski S, Malic S, Wei XQ, Hayes AJ, Wilson MJ, and Williams DW
- Subjects
- Antifungal Agents isolation & purification, Antifungal Agents toxicity, Cell Line, Cell Survival drug effects, Epithelium microbiology, Humans, Keratinocytes drug effects, Microbial Sensitivity Tests, Nystatin isolation & purification, Nystatin toxicity, Organ Culture Techniques, Antifungal Agents chemistry, Antifungal Agents pharmacology, Candida albicans drug effects, Nystatin analogs & derivatives, Nystatin pharmacology
- Abstract
Opportunistic oral infections caused by Candida albicans are frequent problems in immunocompromised patients. Management of such infections is limited due to the low number of antifungal drugs available, their relatively high toxicity and the emergence of antifungal resistance. Given these issues, our investigations have focused on novel derivatives of the antifungal antibiotic Nystatin A1, generated by modifications at the amino group of this molecule. The aims of this study were to evaluate the antifungal effectiveness and host cell toxicity of these new compounds using an in vitro model of oral candidosis based on a reconstituted human oral epithelium (RHOE). Initial studies employing broth microdilution, revealed that against planktonic C. albicans, Nystatin A1 had lower minimal inhibitory concentration than novel derivatives. However, Nystatin A1 was also markedly more toxic against human keratinocyte cells. Interestingly, using live/dead staining to assess C. albicans and tissue cell viability after RHOE infection, Nystatin A1 derivatives were more active against Candida with lower toxicity to epithelial cells than the parent drug. Lactate dehydrogenase activity released by the RHOE indicated a fourfold reduction in tissue damage when certain Nystatin derivatives were used compared with Nystatin A1. Furthermore, compared with Nystatin A1, colonisation of the oral epithelium by C. albicans was notably reduced by the new polyenes. In the absence of antifungal agents, confocal laser scanning microscopy showed that C. albicans extensively invaded the RHOE. However, the presence of the novel derivatives greatly reduced or totally prevented this fungal invasion.
- Published
- 2014
- Full Text
- View/download PDF
19. Biocide activity against urinary catheter pathogens.
- Author
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Malic S, Jordan RP, Waters MG, Stickler DJ, and Williams DW
- Subjects
- Biofilms growth & development, Culture Media, Cyclohexanols pharmacology, Eucalyptol, Eugenol pharmacology, Gram-Negative Bacteria growth & development, Gram-Positive Bacteria growth & development, Microbial Sensitivity Tests, Monoterpenes pharmacology, Oils, Volatile chemistry, Plankton growth & development, Tea Tree Oil pharmacology, Terpenes pharmacology, Biofilms drug effects, Gram-Negative Bacteria drug effects, Gram-Positive Bacteria drug effects, Oils, Volatile pharmacology, Plankton drug effects, Urinary Catheters microbiology
- Abstract
Antimicrobial effects of essential oils against bacteria associated with urinary catheter infection was assessed. Tests were performed on 14 different bacterial species cultured either planktonically or as biofilms. Biofilms were found to be up to 8-fold more tolerant of the test agents. Higher antimicrobial tolerance was also evident in tests conducted in artificial urine. Eugenol exhibited higher antimicrobial effects against both planktonic cells and biofilms than did terpinen, tea tree oil, and cineole.
- Published
- 2014
- Full Text
- View/download PDF
20. Development of an "early warning" sensor for encrustation of urinary catheters following Proteus infection.
- Author
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Malic S, Waters MG, Basil L, Stickler DJ, and Williams DW
- Subjects
- Hydrogen-Ion Concentration, Urine, Ammonia metabolism, Bacterial Proteins metabolism, Biosensing Techniques methods, Catheters, Models, Biological, Proteus enzymology, Proteus Infections enzymology, Urease metabolism, Urinary Catheterization, Urinary Tract Infections enzymology
- Abstract
Biofilm formation in long-term urinary catheterized patients can lead to encrustation and blockage of urinary catheters with serious clinical complication. Catheter encrustation stems from infection with urease-producing bacteria, particularly Proteus mirabilis. Urease generates ammonia from urea, and the elevated pH of the urine results in crystallization of calcium and magnesium phosphates, which block the flow of urine. The aim of this research is to develop an "early warning" silicone sensor for catheter encrustation following bacterial infection of an in vitro bladder model system. The in vitro bladder model was infected with a range of urease positive and negative bacterial strains. Developed sensors enabled catheter blockage to be predicted ~17-24 h in advance of its occurrence. Signaling only occurred following infection with urease positive bacteria and only when catheter blockage followed. In summary, sensors were developed that could predict urinary catheter blockage in in vitro infection models. Translation of these sensors to a clinical environment will allow the timely and appropriate management of catheter blockage in long-term catheterized patients., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2012
- Full Text
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21. Gynecologic oncology training systems in Europe: a report from the European network of young gynaecological oncologists.
- Author
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Gultekin M, Dursun P, Vranes B, Laky R, Bossart M, Grabowski JP, Piek JM, Manchanda R, Grimm C, Dallaku K, Babloyan S, Moisei A, Van Gorp T, Cadron I, Markov P, Micevska A, Halaska M, Steffensen KD, Gristsenko L, Nissi R, Lambaudie E, Tsitsishvili Z, Haidopoulos D, Tsolakidis D, Novak Z, Peiretti M, Dunenova G, Macuks R, Hetland TE, Michelsen TM, Martins FC, Achimas-Cadariu P, Ulrikh EA, Uharcek P, Malic S, Ognjenovic D, Zapardiel I, Johann S, Sukhin VS, and Manchanda R
- Subjects
- Europe, Gynecology education, Medical Oncology education
- Abstract
Objective: The objectives of the study were to highlight some of the differences in training systems and opportunities for training in gynecologic oncology across Europe and to draw attention to steps that can be taken to improve training prospects and experiences of European trainees in gynecologic oncology., Methods: The European Network of Young Gynaecological Oncologists national representatives from 34 countries were asked to review and summarize the training system in their countries of origin and fulfill a mini-questionnaire evaluating different aspects of training. We report analysis of outcomes of the mini-questionnaire and subsequent discussion at the European Network of Young Gynaecological Oncologists national representatives Asian Pacific Organization for Cancer Prevention meeting in Istanbul (April 2010)., Results: Training fellowships in gynecologic oncology are offered by 18 countries (53%). The median duration of training is 2.5 years (interquartile range, 2.0-3.0 years). Chemotherapy administration is part of training in 70.5% (24/34) countries. Most of the countries (26/34) do not have a dedicated national gynecologic-oncology journal. All trainees reported some or good access to training in advanced laparoscopic surgical techniques, whereas 41% indicated no access, and 59% some access to training opportunities in robotic surgery. European countries were grouped into 3 different categories on the basis of available training opportunities in gynecologic oncology: well-structured, moderately structured, and loosely structured training systems., Conclusions: There is a need for further harmonization and standardization of training programs and structures in gynecologic oncology across Europe. This is of particular relevance for loosely structured countries that lag behind the moderately structured and well-structured ones.
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- 2011
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22. Candida biofilms and oral candidosis: treatment and prevention.
- Author
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Williams DW, Kuriyama T, Silva S, Malic S, and Lewis MA
- Subjects
- Age Factors, Antifungal Agents therapeutic use, Candida enzymology, Candida physiology, Candidiasis, Oral etiology, Candidiasis, Oral pathology, Cell Adhesion, Cell Proliferation, Dentures adverse effects, Humans, Immunocompromised Host, Oral Hygiene, Virulence Factors, Biofilms, Candida growth & development, Candidiasis, Oral prevention & control
- Published
- 2011
- Full Text
- View/download PDF
23. Antimicrobial tolerance and the significance of persister cells in recalcitrant chronic wound biofilms.
- Author
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Percival SL, Hill KE, Malic S, Thomas DW, and Williams DW
- Subjects
- Humans, Wound Infection drug therapy, Biofilms, Drug Resistance, Bacterial physiology, Wound Infection microbiology, Wound Infection pathology
- Abstract
The application of antimicrobials in the management of wounds is a complex procedure requiring appropriate clinical decision making, judgment and a thorough understanding of antimicrobial therapies, together with their potential disadvantages. There is considerable direct and indirect evidence for the presence of bacterial biofilms in the chronic wound bed, and it has been demonstrated that bacteria within these biofilms may exhibit both specific and nonspecific antimicrobial tolerance. The antimicrobial tolerance of biofilms is a major concern in the treatment of both infected and nonhealing chronic wounds and an understanding of the mechanisms involved is of fundamental importance in managing wound infections and developing future wound management strategies. The aim of this review is therefore to provide an overview of our current understanding of the mechanisms by which bacteria in wound biofilms can resist conventional antibiotic and antibacterial therapies which is very important to wound healing., (© 2011 by the Wound Healing Society.)
- Published
- 2011
- Full Text
- View/download PDF
24. An in vitro model of chronic wound biofilms to test wound dressings and assess antimicrobial susceptibilities.
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Hill KE, Malic S, McKee R, Rennison T, Harding KG, Williams DW, and Thomas DW
- Subjects
- Anti-Infective Agents, Local pharmacology, Bacteria isolation & purification, Biofilms growth & development, Ciprofloxacin pharmacology, Floxacillin pharmacology, Humans, Microbial Sensitivity Tests methods, Microscopy methods, Microscopy, Electron, Scanning methods, Povidone-Iodine pharmacology, Pseudomonas drug effects, Pseudomonas growth & development, Pseudomonas isolation & purification, Silver pharmacology, Staphylococcus drug effects, Staphylococcus growth & development, Staphylococcus isolation & purification, Anti-Bacterial Agents pharmacology, Bacteria drug effects, Bacteria growth & development, Bandages, Biofilms drug effects, Wound Infection drug therapy, Wound Infection microbiology
- Abstract
Objectives: The targeted disruption of biofilms in chronic wounds is an important treatment strategy and the subject of intense research. In the present study, an in vitro model of chronic wound biofilms was developed to assess the efficacy of antimicrobial treatments for use in the wound environment., Methods: Using chronic wound isolates, assays of bacterial coaggregation established that aerobic and anaerobic wound bacteria were able to coaggregate and form biofilms. A constant depth film fermenter (CDFF) was used to develop wound biofilms in vitro, which were analysed using light microscopy and scanning electron microscopy. The susceptibility of bacteria within these biofilms was examined in response to the most frequently prescribed 'chronic wound' antibiotics and a series of iodine- and silver-containing commercial antimicrobial products and lactoferrin., Results: Defined biofilms were rapidly established within 1-2 days. Antibiotic treatment demonstrated that mixed Pseudomonas and Staphylococcus biofilms were not affected by ciprofloxacin (5 mg/L) or flucloxacillin (15 mg/L), even at concentrations equivalent to twice the observed peak serum levels. The results contrasted with the ability of povidone-iodine (1%) to disrupt the wound biofilm; an effect that was particularly pronounced in the dressing testing where iodine-based dressings completely disrupted established 7 day biofilms. In contrast, only two of six silver-containing dressings exhibited any effect on 3 day biofilms, with no effect on 7 day biofilms., Conclusions: This wound model emphasizes the potential role of the biofilm phenotype in the observed resistance to antibiotic therapies that may occur in chronic wounds in vivo.
- Published
- 2010
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25. Characterization of Candida parapsilosis infection of an in vitro reconstituted human oral epithelium.
- Author
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Silva S, Henriques M, Oliveira R, Azeredo J, Malic S, Hooper SJ, and Williams DW
- Subjects
- Aspartic Acid Endopeptidases analysis, Candida classification, Candida enzymology, Candidiasis microbiology, Candidiasis, Oral enzymology, Candidiasis, Vulvovaginal microbiology, Epithelium enzymology, Epithelium microbiology, Female, Fungal Proteins analysis, Humans, L-Lactate Dehydrogenase analysis, Microscopy, Confocal, Microscopy, Electron, Scanning, Mouth Mucosa enzymology, Pepstatins pharmacology, Polymerase Chain Reaction, Protease Inhibitors pharmacology, Time Factors, Urinary Tract Infections microbiology, Virulence, Candida pathogenicity, Candidiasis, Oral microbiology, Mouth Mucosa microbiology
- Abstract
Oral candidosis is a common problem in immunocompromised patients, and whilst Candida albicans is regarded as the principal cause of infection, other non-Candida albicans Candida (NCAC) species are increasingly being recognized as human pathogens. Relatively little is known about the virulence factors associated with NCAC species, and the aim of this study was to use a reconstituted human oral epithelium (RHOE) to examine epithelial infection withCandida parapsilosis. Strains originating from the oral and vaginal mucosa and from the urinary tract were all shown to colonize RHOE in a strain-dependent manner. Strain differences were found in the colonizing morphology and in the extent of invasion of the RHOE. Low invasion of RHOE was detected for strains after 12 h, whereas extensive tissue damage was evident after 24 h when assessed using histological examination and lactate dehydrogenase activity determination. Tissue damage was reduced in the presence of pepstatin A, although C. parapsilosis invasion of the tissue was not inhibited. Real-time polymerase chain reaction of secreted aspartyl proteinase (SAP) genes (SAPP1-3) showed that expression was strain dependent, with an increased expression generally occurring for Candida infecting RHOE compared with planktonic equivalents. In summary, C. parapsilosis was not highly invasive of RHOE but did induce significant tissue damage, which could relate to specific SAPgene expression.
- Published
- 2009
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- View/download PDF
26. Detection and identification of specific bacteria in wound biofilms using peptide nucleic acid fluorescent in situ hybridization (PNA FISH).
- Author
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Malic S, Hill KE, Hayes A, Percival SL, Thomas DW, and Williams DW
- Subjects
- DNA, Bacterial analysis, DNA, Bacterial genetics, Epidermis injuries, Epidermis microbiology, Epidermis pathology, Gram-Positive Bacterial Infections microbiology, Gram-Positive Bacterial Infections pathology, Humans, Micrococcus cytology, Micrococcus isolation & purification, Micrococcus physiology, Microscopy, Confocal, Pseudomonas Infections pathology, Pseudomonas aeruginosa cytology, Pseudomonas aeruginosa physiology, RNA, Ribosomal, 16S analysis, RNA, Ribosomal, 16S genetics, Sensitivity and Specificity, Staphylococcus aureus cytology, Staphylococcus aureus isolation & purification, Staphylococcus aureus physiology, Streptococcus cytology, Streptococcus isolation & purification, Streptococcus physiology, Wounds and Injuries pathology, Biofilms, In Situ Hybridization, Fluorescence methods, Peptide Nucleic Acids genetics, Pseudomonas Infections microbiology, Pseudomonas aeruginosa isolation & purification, Wounds and Injuries microbiology
- Abstract
Biofilms provide a reservoir of potentially infectious micro-organisms that are resistant to antimicrobial agents, and their importance in the failure of medical devices and chronic inflammatory conditions is increasingly being recognized. Particular research interest exists in the association of biofilms with wound infection and non-healing, i.e. chronic wounds. In this study, fluorescent in situ hybridization (FISH) was used in combination with confocal laser scanning microscopy (CLSM) to detect and characterize the spatial distribution of biofilm-forming bacteria which predominate within human chronic skin wounds (Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus sp. and Micrococcus sp.). In vitro biofilms were prepared using a constant-depth film fermenter and a reconstituted human epidermis model. In vivo biofilms were also studied using biopsy samples from non-infected chronic venous leg ulcers. The specificity of peptide nucleic acid (PNA) probes for the target organisms was confirmed using mixed preparations of planktonic bacteria and multiplex PNA probing. Identification and location of individual bacterial species within multi-species biofilms demonstrated that P. aeruginosa was predominant. CLSM revealed clustering of individual species within mixed-species biofilms. FISH analysis of archive chronic wound biopsy sections showed bacterial presence and allowed bacterial load to be determined. The application of this standardized procedure makes available an assay for identification of single- or multi-species bacterial populations in tissue biopsies. The technique provides a reliable tool to study bacterial biofilm formation and offers an approach to assess targeted biofilm disruption strategies in vivo.
- Published
- 2009
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27. Hydantoin derivatives of L- and D-amino acids: synthesis and evaluation of their antiviral and antitumoral activity.
- Author
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Rajic Z, Zorc B, Raic-Malic S, Ester K, Kralj M, Pavelic K, Balzarini J, De Clercq E, and Mintas M
- Subjects
- Amino Acids chemistry, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Cell Line, Tumor, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Fibroblasts drug effects, Humans, Hydantoins chemistry, Magnetic Resonance Spectroscopy, Viruses drug effects, Amino Acids chemical synthesis, Amino Acids pharmacology, Antineoplastic Agents pharmacology, Antiviral Agents pharmacology, Hydantoins chemical synthesis, Hydantoins pharmacology
- Abstract
3,5-Disubstituted hydantoin (1,3-imidazolidinedione) derivatives 5a-h were prepared by base induced cyclization of the corresponding N-(1-benzotriazolecarbonyl)-L- and D-amino acid amides 4a-h. Compounds 5a-h were evaluated for their cytostatic and antiviral activities. Among all the compounds evaluated, 3-benzhydryl-5-isopropyl hydantoin (5a) showed a weak but selective inhibitory effect against vaccinia virus (EC(50) = 16 microg/mL; selectivity index: 25). 3-Cyclohexyl-5-phenyl hydantoin (5g) showed inhibitory activity against cervical carcinoma (HeLa, IC(50) = 5.4 microM) and breast carcinoma (MCF-7, IC(50) = 2 microM), but also cytotoxic effects towards human normal fibroblasts (WI 38). On the contrary, the 3-benzhydryl-5-phenyl substituted hydantoin derivative 5h showed moderate inhibitory activity towards HeLa, MCF-7, pancreatic carcinoma (MiaPaCa-2), lung carcinoma (H 460) and colon carcinoma (SW 620) (IC(50) = 20-23 microM), but no effect on WI 38.
- Published
- 2006
- Full Text
- View/download PDF
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