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The aim of this study was to carry out basic ecological research on rodent pests within subsistence-level agricultural communities in Africa. A range of techniques were used to collect baseline ecological knowledge on the temporal and spatial dynamics of rodent populations within rural farming communities in Tanzania, Swaziland and Namibia. These techniques included habitat surveys using removal trapping, capture-mark-recapture grids, and radio tracking of individually tagged animals. We also studied the local communities’ knowledge, attitudes and practices with respect to rodents and their control, the current cost of rodent damage and the costs/benefits of rodent control. Based on these data, a case-control trial was implemented to evaluate an ecologically-based rodent management (EBRM) intervention using intensive trapping coordinated at the community level. Results showed that intensive trapping using community based rodent management was cost-beneficial for rural farming communities, and these EBRM strategies are ecologically sustainable. Our research has shown that efficacy is more than 75% when compared to what farmers normally do to reduce rat populations. Farmer training and community cooperation are essential, and expertise in social anthropology to develop appropriate knowledge dissemination platforms must be supported.

The black and rufous sengi Rhynchocyon petersi is restricted to the Eastern Arc Mountains and coastal forests of East Africa and considered vulnerable because of habitat fragmentation and degradation. Coastal forests are believed to have been isolated from each other for thousands of years due to climatic changes. Since R. petersi is described as strongly dependent on its forest habitat, we hypothesized that R. petersi from different forests would show genetic divergence. We investigated the genetic structure and diversity of this species in four coastal forests in Tanzania using eight microsatellites and cytochrome b sequences. In total, 45 individuals were captured after strenuous sampling efforts. For comparative purposes we also sequenced the cytochrome b of 57 individuals from a sympatric rodent forest species, Beamys hindei. The results indicate extant R. petersi have descended from a single population of high effective size ( Ne) with no forest-distinctive signal. In contrast, B. hindei is more genetically structured: Although the most common haplotype is found in the three closest forests, each forest harbours private haplotypes. Moreover, B. hindei Ne appeared 10 times smaller than R. petersi in Zaraninge forest. While B. hindei results are consistent with the scenario of long-term isolation of coastal forests, the R. petersi are not. We suggest R. petersi may less depend on forest habitat than previously suspected, consistent with anecdotal reports of sengis nesting in intervening agricultural habitat. From a conservation viewpoint, this sengi species therefore appears robust to the current spatial and temporal scale of habitat fragmentation. [ABSTRACT FROM AUTHOR]

Special conditions are required for genetic differentiation to arise at a local geographical scale in the face of gene flow. The Natal multimammate mouse, Mastomys natalensis, is the most widely distributed and abundant rodent in sub-Saharan Africa. A notorious agricultural pest and a natural host for many zoonotic diseases, it can live in close proximity to humans and appears to compete with other rodents for the synanthropic niche. We surveyed its population genetic structure across a 180-km transect in central Tanzania along which the landscape varied between agricultural land in a rural setting and natural woody vegetation, rivers, roads and a city (Morogoro). We sampled M. natalensis across 10 localities and genotyped 15 microsatellite loci from 515 individuals. Hierarchical STRUCTURE analyses show a K-invariant pattern distinguishing Morogoro suburbs (located in the centre of the transect) from nine surrounding rural localities. Landscape connectivity analyses in Circuitscape and comparison of rainfall patterns suggest that neither geographical isolation nor natural breeding asynchrony could explain the genetic differentiation of the urban population. Using the isolation-with-migration model implemented in IMa2, we inferred that a split between suburban and rural populations would have occurred recently (<150 years ago) with higher urban effective population density consistent with an urban source to rural sink of effective migration. The observed genetic differentiation of urban multimammate mice is striking given the uninterrupted distribution of the animal throughout the landscape and the high estimates of effective migration (2NeM = 3.0 and 29.7), suggesting a strong selection gradient across the urban boundary. [ABSTRACT FROM AUTHOR]

We investigated changes in burrow architecture and fractal dimension across seasons and between the sexes in the solitary East African root rat T achyoryctes splendens over an entire calendar year. The basic burrow system comprised a main tunnel reticulating into foraging tunnels, a nest consisting of food store chamber, latrine and sleeping area, and a bolt hole. Main tunnel length was strongly affected by sex, and contrary to expectations, it was longer for females than for males (during both the dry and the wet seasons). The number and the length of foraging tunnels were affected by both sex and season, with females' burrows having more foraging tunnels than males in both the dry and the wet seasons. Females also had burrows with higher fractal dimension than males, while fractal dimension increased with burrow length for both sexes. We suggest that unlike the solitary bathyergid mole-rats, male T . splendens do not construct larger burrows than females in the search for mates, but rather females have larger burrows with more foraging tunnels resulting from the increased need for provisioning of their young. [ABSTRACT FROM AUTHOR]

The trematode Paraconcinnum leirsi n.sp. (Dicrocoeliidae) is described from two rodent species, the African gerbil, Gerbilliscus vicinus, and the spiny mouse, Acomys spinosissimus, from Tanzania. It differs from the description of P. hylomisci found in the Stella wood mouse, Hylomyscus stella, in the Democratic Republic of Congo. Molecular studies were performed by sequencing the near complete 18S rDNA gene of the fluke to assess its phylogenetic position within the Dicrocoeliidae. The resulting estimate of evolutionary divergence between the fluke and other dicrocoeliids was 1.60 ± 0.22% base differences per site. The phylogenetic analysis shows that the fluke is a new species within Dicrocoeliidae falling in a cluster with the genera Corrigia, Lyperosomum, Concinnum and Eurytrema although phylogenetic relationships among these genera are not well resolved. This is the first dicrocoeliid reported from rodents in eastern Africa. [ABSTRACT FROM AUTHOR]

The incidence and host range of the melon fruit fly, Bactrocera cucurbitae, was studied in the Morogoro Region of Central Tanzania between October 2004 and October 2006. Occurrence was limited to low to medium altitude locations. Populations reached a peak in the dry season, between July and September. Host plants belonged mostly to the Cucurbitaceae family, with non-cucurbit hosts being infested occasionally and at low infestation rate. Highly preferred cucurbit hosts were cucumber (Cucumis sativus), melon (Cucumis melo) and watermelon (Citrullus lanatus), while Momordica cf trifoliata was the most important wild host. Bactrocera cucurbitae appeared to dominate most indigenous cucurbit infesters, with the exception of Dacus ciliatus which was still dominant in some cucurbitaceous spp. [ABSTRACT FROM AUTHOR]

To determine the specificity of Morogoro virus for its reservoir host, we studied its host range and genetic diversity in Tanzania. We found that 2 rodent species other than Mastomys natalensis mice carry arenaviruses. Analysis of 340 nt of the viral RNA polymerase gene showed sympatric occurrence of 3 distinct arenaviruses. [ABSTRACT FROM AUTHOR]

The host range of major fruit fly pests in Central Tanzania was evaluated from October 2004 to October 2006. Samples of 48 potential hosts were collected and incubated for fruit fly emergence. Bactrocera invadens was the dominant species in incidence expressed as the ratio of infested to total number samples collected, as well as infestation rate, expressed as number of flies emerging per unit weight. Eight new host fruits are reported. Infestation by native pests, such as Ceratitis capitata and C. cosyra, was minor compared to B. invadens. Ceratitis rosa was the dominant species in temperate fruits, and Cucurbitaceae were mainly infested by Bactrocera cucurbitae, a specialized cucurbit feeder. Among commercial fruits, high infestation incidences were observed in mango and guava, but they decreased throughout the fruiting season. Low infestation rates were observed in all Citrus species and in avocado, indicating these fruits as poor hosts for the studied fruit fly pests in this region. Widespread availability and abundance of fruit species studied here ensures year-round breeding of B. invadens. Seasonal infestation differs, with mango being the most important host in October to January, while guava being important from February to August. Tropical almond showed very high incidence and infestation rate for B. invadens and might act as an important reservoir host, bridging the fruiting seasons of mango and guava. Soursop acts as an important host for C. cosyra after the mango season. Ceratitis capitata is a pest of minor importance of the commercial fruits studied in this region. [ABSTRACT FROM AUTHOR]

A serosurvey involving 2,520 small mammals from Tanzania identified a hot spot of arenavirus circulation in Morogoro. Molecular screening detected a new arenavirus in Natal multimammate mice (Mastomys natalensis), Morogoro virus, related to Mopeia virus. Only a small percentage of mice carry Morogoro virus, although a large proportion shows specific antibodies. [ABSTRACT FROM AUTHOR]

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A capture-mark-recapture study was conducted in crop fields in Morogoro, Tanzania, to investigate how the population dynamics of multimammate field rats, Mastomys natalensis, was influenced by the commonly practised land preparation methods and cropping systems. Two land preparation methods (tractor ploughing and slash and burn) and two cropping systems (mono-cropping with maize and inter-cropping with maize and beans) were investigated in a Complete Randomized Design experiment with 2 × 2 factors, and two 0.5 ha replicates per treatment. Mastomys natalensis comprised 97.8% of the abundance of the three rodent species captured in the study area. The slash and burned fields had higher rodent population densities than tractor ploughed fields ( P < 0.05)... [ABSTRACT FROM AUTHOR]

The temporal occurrence of the invasive and economically important pest fruit fly, Bactrocera invadens was studied in three agro-ecological areas of Morogoro Region, central Tanzania, during 2004–2005. Weekly and monthly trappings were carried out with methyl eugenol, protein bait and synthetic food attractant. Bactrocera invadens was permanently present at low and mid-altitudes (380–520 m a.s.l.) with peak periods coinciding with the fruiting season of mango ( Mangifera indica) and guava ( Psidium guajava). At high altitude (1650 m a.s.l.) its incidence was only temporal and apparently the result of dispersal from lower altitudes after the mango fruiting season. Rearing results showed mango, loquat ( Eriobotrya japonica), guava and grapefruit ( Citrus × paradisi) to be the favoured commercial host fruits. Other Citrus species, cucurbits, papaya ( Carica papaya) and avocado ( Persea americana) were less favoured. [ABSTRACT FROM AUTHOR]

In this paper we discuss the contribution of cytogenetics to the systematics of Arvicanthis in East Africa, by reviewing all the known chromosomal cytotypes of the genus in the area. We also provide G- and C-banding comparisons for two recently described karyotypes, provisionally named ANI-5 (2 n = 56, NFa = 62) and ANI-6 (2 n = 60, NFa = 72). This, therefore, brings the total number of known cytotypes in this area to 10. Five of these correspond to the species recognized by the latest rodent checklist, i.e. A. nairobae (2 n = 62, NFa = 78), A. neumanni (2 n = 52–53, NFa = 62), A. blicki (2 n = 48, NFa = 62), A. abyssinicus (2 n = 62, NFa = 64) and A. niloticus (2 n = 62, NFa = 60–62). The taxonomic status of the remaining five cytotypes ( A. cf. somalicus, 2 n = 62 NFa = 62–63; ANI-5, 2 n = 56, NFa = 62; ANI-6/6a 2 n = 60, NFa = 72/76; ANI-7, 2 n = 56, NFa = 78; and ANI-8, 2 n = 44, NF = 72) is discussed. Finally, we reconstruct the phylogenetic relationships among all the known karyotypes on the basis of banding data available for the genus in Africa and show the occurrence of two main clades, each characterized by different types of chromosomal rearrangements. The times of the cladogenetic events, inferred by a molecular clock, indicate that karyotype evolution has accomplished almost all the dichotomic events from the end of the Miocene to the present day. The discovery of a large chromosomal differentiation between populations showing low genetic distances and intrapopulation chromosomal polymorphism suggests that the process of chromosomal differentiation in Arvicanthis is still ongoing and may possibly be responsible for speciation. [ABSTRACT FROM AUTHOR]

Regular samplings were done of two important vectors in farmers’ fields during the 1999/2000 and 2000/01 rice seasons at crop stages susceptible to rice yellow mottle virus (RYMV) on a traditional rice variety (‘Supa’) under rainfed lowland conditions to provide information on the bionomics and importance of these vectors in the disease transmission. The population of Chaetocnema sp. (nr. varicornis Jacoby) (Coleoptera: Chrysomelidae) was significantly higher in hotspot than non-hotspot areas. However, there was no significant difference in the C. pulla Chapuis population between these two areas. In general, the Chaetocnema sp. population was higher than that of C. pulla, and both vectors reached the peak of their population at 63 days after planting. Early planting in the hotspot areas is suggested as a disease management strategy. Both vectors are naturally infective and Chaetocnema sp. proved more efficient than C. pulla in the transmission of RYMV. [ABSTRACT FROM AUTHOR]

The presence of the Solanum fruit fly, Bactrocera latifrons, in Africa is reported for the first time, based on trapped and reared specimens in Tanzania. Two new host records, Solanum aethiopicum and Solanum macrocarpon, are reported. [ABSTRACT FROM AUTHOR]

Background: Understanding movement patterns of rodent pests is essential for planning management strategies. Currently, for many rural village contexts, there is limited information on how rodents move between domestic and peridomestic areas, and the surrounding habitats. We investigated movement of the multimammate rat, Mastomys natalensis and the black rat, Rattus rattus in nine villages in Kilombero District, Tanzania. We used Rhodamine B (RhB) baits placed inside houses (R. rattus preferred habitat) in five villages and placed outside (M. natalensis preferred habitat) in four villages., Results: Whilst both species were rarely captured in their nonpreferred habitat (5% M. natalensis inside houses; 23% R. rattus outside houses), evidence of RhB consumption when bait was in nonpreferred habitat was high for both species (50% M. natalensis; 57% R. rattus), indicating frequent movement to nonpreferred habitats. Whilst R. rattus movement distances were consistent with previous studies (maximum 81 m), within our village context, M. natalensis moved further (maximum 132 m) compared to previous published studies. Although bait consumption rates varied seasonally, we found no evidence that utilization of nonpreferred habitat varied seasonally. M. natalensis females moved into houses more frequently than males, whilst immature R. rattus moved outside houses more than mature individuals., Conclusion: These findings highlight the dynamic movement patterns of commensal rodents with implications for control and disease transmission. © 2024 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry., (© 2024 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.)

Understanding rodent-ectoparasite interactions and the factors driving them is important in understanding the epidemiology of diseases involving an arthropod vector. Fleas are the primary vector for Yersinia pestis , the bacteria that causes plague and monitoring of flea population is essential for planning the potential mitigation measures to prevent the disease outbreak. In this study, we investigated flea abundance, community structure and the potential factors driving flea infestation in areas with frequent (persistent) and non-frequent plague (non-persistent) outbreaks. We collected fleas from captured rodents in two villages with both forest and farm habitats. We found 352 fleas belonging to 5 species with Dinopsyllus lypusus the most abundant overall (57.10%) and Ctenophthalmus spp . the lowest (1.70%). There were no significant differences of flea abundance between study localities, habitats and seasons (p > 0.05) but, flea infestation was significantly positively associated with the persistent locality and with the short rain season (p < 0.05). Further, flea abundance increased significantly with rodent body weight (p < 0.05). Furthermore, we found fleas broadly structured into two communities varying between the dry, long rain and short rain seasons. These findings have important implications for public health, as they may be used to assess and control the risks of plague transmission and other flea borne diseases in the foci., Competing Interests: The authors declare that they have no conflict of interest., (© 2024 The Authors.)

The multimammate mice (Mastomys natalensis) is the most-studied rodent species in sub-Saharan Africa, where it is an important pest species in agriculture and carrier of zoonotic diseases (e.g. Lassa virus). Here, we provide a unique dataset that consists of twenty-nine years of continuous monthly capture-mark-recapture entries on one 3 ha mosaic field (MOSA) in Morogoro, Tanzania. It is one of the most accurate and long-running capture-recapture time series on a small mammal species worldwide and unique to Africa. The database can be used by ecologists to test hypotheses on the population dynamics of small mammals (e.g. to test the effect of climate change), or to validate new algorithms on real long-term field data (e.g. new survival analyses techniques). It is also useful for both scientists and decision-makers who want to optimize rodent control strategies and predict outbreaks of multimammate mice., (© 2023. The Author(s).)

Objectives: Plague has been a threat to human health in Tanzania since 1886. This zoonotic disease has established several endemic foci in the country, posing a risk of outbreaks. This study was conducted to investigate the presence of Yersinia pestis in small mammals in five districts. These districts were selected because of recent (Mbulu), past (40-18 years ago: Lushoto) and historic (>100 years ago: Iringa and Kilolo) human cases of plague. In addition, one region that has not had any reported human cases of plague was included (Morogoro-Mvomero)., Methods: Blood from 645 captured small mammals was screened for antibodies against the fraction 1 (F1) antigen of Y. pestis using indirect enzyme-linked immunosorbent assay (ELISA) and competitive-blocking ELISA., Results: Specific antibodies against Y. pestis F1 antigens were detected in six (0.93%) animals belonging to Mastomys natalensis . Of these, four animals were captured in the active focus in Mbulu, and two animals were captured from an area with no history of human plague (Morogoro-Mvomero)., Conclusion: These results provide evidence of the circulation of Y. pestis in small mammals in Tanzania. Furthermore, evidence of the circulation of Y. pestis in Morogoro-Mvomero highlights the importance of carrying out plague surveillance in areas with no history of human plague, which can help to predict areas where future outbreaks may occur., (© 2022 The Author(s).)

Hepatitis C virus (HCV; genus Hepacivirus ) represents a major public health problem, infecting about three per cent of the human population. Because no animal reservoir carrying closely related hepaciviruses has been identified, the zoonotic origins of HCV still remain unresolved. Motivated by recent findings of divergent hepaciviruses in rodents and a plausible African origin of HCV genotypes, we have screened a large collection of small mammals samples from seven sub-Saharan African countries. Out of 4,303 samples screened, eighty were found positive for the presence of hepaciviruses in twenty-nine different host species. We, here, report fifty-six novel genomes that considerably increase the diversity of three divergent rodent hepacivirus lineages. Furthermore, we provide strong evidence for hepacivirus co-infections in rodents, which were exclusively found in four sampled species of brush-furred mice. We also detect evidence of recombination within specific host lineages. Our study expands the available hepacivirus genomic data and contributes insights into the relatively deep evolutionary history of these pathogens in rodents. Overall, our results emphasize the importance of rodents as a potential hepacivirus reservoir and as models for investigating HCV infection dynamics., (© The Author(s) 2021. Published by Oxford University Press.)

Infectious diseases of wildlife are typically studied using data on antibody and pathogen levels. In order to interpret these data, it is necessary to know the course of antibodies and pathogen levels after infection. Such data are typically collected using experimental infection studies in which host individuals are inoculated in the laboratory and sampled over an extended period, but because laboratory conditions are controlled and much less variable than natural conditions, the immune response and pathogen dynamics may differ. Here, we compared Morogoro arenavirus infection patterns between naturally and experimentally infected multimammate mice (Mastomys natalensis). Longitudinal samples were collected during three months of bi-weekly trapping in Morogoro, Tanzania, and antibody titer and viral RNA presence were determined. The time of infection was estimated from these data using a recently developed Bayesian approach, which allowed us to assess whether the natural temporal patterns match the previously observed patterns in the laboratory. A good match was found for 52% of naturally infected individuals, while most of the mismatches can be explained by the presence of chronically infected individuals (35%), maternal antibodies (10%), and an antibody detection limit (25%). These results suggest that while laboratory data are useful for interpreting field samples, there can still be differences due to conditions that were not tested in the laboratory.

Many emerging infections are RNA virus spillovers from animal reservoirs. Reservoir identification is necessary for predicting the geographic extent of infection risk, but rarely are taxonomic levels below the animal species considered as reservoir, and only key circumstances in nature and methodology allow intrinsic virus-host associations to be distinguished from simple geographic (co-)isolation. We sampled and genetically characterized in detail a contact zone of two subtaxa of the rodent Mastomys natalensis in Tanzania. We find two distinct arenaviruses, Gairo and Morogoro virus, each spatially confined to a single M. natalensis subtaxon, only co-occurring at the contact zone's centre. Inter-subtaxon hybridization at this centre and a continuum of quality habitat for M. natalensis show that both viruses have the ecological opportunity to spread into the other substaxon's range, but do not, strongly suggesting host-intrinsic barriers. Such barriers could explain why human cases of another M. natalensis-borne arenavirus, Lassa virus, are limited to West Africa., Competing Interests: The authors have declared that no competing interests exist.

Resistance of rodents to anticoagulant rodenticides has emerged in several areas across the world. Single nucleotide mutations in the vkorc1 gene have been shown to elicit various levels of anticoagulant resistance, and these mutations are prevalent in several Rattus and Mus musculus populations. In sub-Saharan Africa, the Natal multimammate mouse, Mastomys natalensis, is one of the most damaging pests to crops, and anticoagulant poisons such as bromadiolone are frequently used to control these rodents in agricultural fields. Here, we investigate if vkorc1 shows any polymorphism in natural populations of M. natalensis. We sequenced the third exon of vkorc1 of 162 M. natalensis captured from 14 different agricultural sites in Morogoro Region, Tanzania. In addition to 6 SNPs in the noncoding flanking region, we detected 3 nonsynonymous SNPs in this exon: 10 animals (6.2%) carried a Leu108Val variant, 2 animals (1.2%) an Ala140Thr variant, and 1 animal (0.6 %) an Arg100His variant, all 3 in heterozygous form. Ala140Thr is just one residue from a mutation known to be involved in anticoagulant resistance in Rattus and Mus. While in vitro or in vivo experiments are needed to link vkorc1 genetic polymorphisms to level of VKOR activity and anticoagulant susceptibility, our results suggest that M. natalensis individuals may vary in their response to anticoagulant rodenticides. This is the first vkorc1 sequence data from a species outside the Rattus or Mus genera, and for the first time from a rodent species endemic to Africa., (© The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)

Understanding the effects of land-use change on zoonotic disease risk is a pressing global health concern. Here, we compare prevalence of Yersinia pestis, the etiologic agent of plague, in rodents across two land-use types-agricultural and conserved-in northern Tanzania. Estimated abundance of seropositive rodents nearly doubled in agricultural sites compared with conserved sites. This relationship between land-use type and abundance of seropositive rodents is likely mediated by changes in rodent and flea community composition, particularly via an increase in the abundance of the commensal species, Mastomys natalensis, in agricultural habitats. There was mixed support for rodent species diversity negatively impacting Y. pestis seroprevalence. Together, these results suggest that land-use change could affect the risk of local transmission of plague, and raise critical questions about transmission dynamics at the interface of conserved and agricultural habitats. These findings emphasize the importance of understanding disease ecology in the context of rapidly proceeding landscape change., (© The American Society of Tropical Medicine and Hygiene.)

Despite its near pan-African range, the Natal multimammate mouse, Mastomys natalensis, carries the human pathogen Lassa virus only in West Africa, while the seemingly non-pathogenic arenaviruses Mopeia, Morogoro, and Luna have been detected in this semi-commensal rodent in Mozambique/Zimbabwe, Tanzania and Zambia, respectively. Here, we describe a novel arenavirus in M. natalensis from Gairo district of central Tanzania, for which we propose the name "Gairo virus". Surprisingly, the virus is not closely related with Morogoro virus that infects M. natalensis only 90km south of Gairo, but clusters phylogenetically with Mobala-like viruses that infect non-M. natalensis host species in Central African Republic and Ethiopia. Despite the evolutionary distance, Gairo virus shares basic ecological features with the other M. natalensis-borne viruses Lassa and Morogoro. Our data show that M. natalensis, carrying distantly related viruses even in the same geographical area, is a potent reservoir host for a variety of arenaviruses., (Copyright © 2014 Elsevier Inc. All rights reserved.)

We studied associations between rodents and their arthropod ectoparasites in crop fields and household compounds in the highlands of Tigray, Northern Ethiopia. Ectoparasite infestation indices, such as percent infestation, mean abundance, prevalence and host preferences, were calculated for each taxon. In total, 172 rodents from crop fields and 97 from household compounds were trapped. Rodent species and numbers trapped from the crop fields and household compounds were Mastomys awashensis (Lavrenchenko, Likhnova & Baskevich, 1998) (88 and 44), Arvicanthis dembeensis (Ruppel, 1842) (63 and 37) and Acomys sp. (21 and 16), respectively. A total of 558 insects and acarids (belonging to 11 taxa) were recovered from the rodents trapped in the crop fields, and 296 insects and acarid (belonging to 6 taxa) from the rodents trapped in the household compounds. Approximately 66% of the rodents trapped from the crop fields and 47% of those trapped from the household compounds were infested with ectoparasites. Laelaps sp. (64.9%) and Xenopsylla sp. (20.6%) comprised the highest proportion of the ectoparasites recovered in the crop fields, and the same ectoparasites, but in reverse order, comprised the highest proportions in the household compounds (Xenopsylla [50.3%] and Laelaps sp. [29%]). Our study revealed that crop fields and household compounds in the highlands share similar rodents and several ectoparasites. Furthermore, at least 1 of the rodent species and some of the ectoparasites identified in this study were reported to have posed medical and veterinary threats in other parts of Ethiopia and neighboring countries., (© 2011 ISZS, Blackwell Publishing and IOZ/CAS.)

The East African Mopeia virus (MOPV) is an arenavirus closely related to the highly pathogenic West African Lassa virus, even sharing the same reservoir rodent host Mastomys natalensis. Because MOPV is not known to cause human disease, it offers a unique alternative for studying Lassa virus transmission. We investigated how habitat, population density, and host characteristics are related to MOPV occurrence in M. natalensis populations in Morogoro, Tanzania. In 3 contrasting habitats, 511 M. natalensis individuals were trapped, 12.1% (58/480 tested individuals) of which tested seropositive for antibodies and 8.4% (41/489 tested individuals) for MOPV-RNA. Although population densities differ among habitats, density and habitat were not significantly correlated to MOPV-RNA or antibody presence. Antibody presence was not significantly correlated with any host characteristics. In contrast, MOPV-RNA presence was inversely related to weight, age, sexual maturity, and body mass index. The model with body mass index as predictor was the best at predicting infection probability. Thirty-five individuals were exclusively MOPV-RNA positive, 52 were exclusively antibody positive, and 6 were both MOPV-RNA and antibody positive. Interpreting these data using experimental infection results from studies on other arenaviruses, this would mean that these infections were very recent, old, and roughly 1-3 weeks after infection, respectively. The higher RNA prevalence in juveniles implies vertical transmission, or that horizontal transmission occurs mainly in this age group due to lack of immunity, higher susceptibility, and/or higher juvenile contact rates. This study demonstrates the strength of combining information on antibody and RNA presence with host characteristics, and how this information can provide valuable insights into transmission dynamics.

We investigated host and flea species composition across different habitats during dry and rainy seasons in the Western Usambara Mountains in Tanzania. During both seasons, similarity in flea species composition increased with an increase in the similarity in host species composition. Nevertheless, between-season within-habitat as well as within-season between-habitat similarity in host species composition was higher than similarity in flea species composition. Ordination of habitats according to their host and flea species composition demonstrated that the pattern of between-habitat similarity in both host and flea species composition varied seasonally. Despite the relatively rich mammal and flea fauna of the study region, the major contribution to variation in species composition between seasons and among habitats was due to a few species only. Flea assemblages on Lophuromys kilonzoi Verheyen et al., 2007 and Praomys delectorum Thomas, 1910 in different habitats were equally similar in either season. In contrast, flea assemblages on Mastomys natalensis (Smith, 1834) occurring in different habitats were more similar in the dry than in the rainy season, whereas the opposite was the case for fleas on Grammomys sp. In different hosts, the main differences in species composition of flea assemblages between seasons as well as among habitats were due to different flea species. Although our results support the earlier idea that parasite species composition is determined by both host species composition and habitat properties, the former appears to explain variance in flea species composition between localities in the tropics better than between localities in temperate and arid zones., (© 2009 ISZS, Blackwell Publishing and IOZ/CAS.)

This paper describes a case which presents an evident variation from the "standard" XX/XY sex chromosomal constitution in a rodent, Acomys sp. This species known to be found in three localities of East Africa has only recently been separated from A. spinosissimus, its closest relative. In our study, five specimens of Acomys sp. and eight specimens of A. spinosissimus were live-trapped in five localities. Comparisons between the two taxa assed by G-banding show a complete homology in the chromosomal shape and banding pattern for 29 pairs of chromosomes corresponding to the complete autosomal set of A. spinosissimus. However, while all the A. spinosissimus analysed have 2n = 60 and a XY-XX system, in Acomys sp. males and females constitute mosaics for sex chromosomes in the bone marrow cells. Females (2n = 59, 60) have an excess (97%) of aneuploid cells with one single giant X chromosome, and males (2n = 60, 61) show X0/XY cells occurring in somatic tissues and XY cells in the germinal lineage. In addition, an odd heterochromatic submetacentric chromosome was identified in all the cells examined in two males and a female of Acomys sp. Since this chromosome was not related to sex determination and it is not present in all the analysed specimens, it can be considered as a B chromosome. Finally, the in situ fluorescence hybridisation (FISH) with telomeric probes showed a very intense interstitial telomeric signal (ITS) at the medial part on the long heterochromatic arm of the X chromosome. This could be due to recent chromosomal rearrangement.

Human plague in the Western Usambara Mountains in Tanzania has been a public health problem since the first outbreak in 1980. The wildlife reservoir is unknown and eradication measures that have proved effective elsewhere in Tanzania appear to fail in this region. We use census data from 2002 and hospital records kept since 1986 to describe the temporal, spatial and demographic variation in human plague. A seasonal peak in cases occurs from December to February with the numbers of cases during this peak varying between 0 and 1150. Variation in incidence, calculated for each village as the mean number of cases per thousand inhabitants per year, indicates that human plague is concentrated around a group of three neighbouring, relatively isolated, high-altitude villages; Nywelo, Madala and Gologolo. However, there was no evidence that these villages were acting as a source of infection for the remainder of the focus. The likelihood of becoming infected with plague is highest between the ages of 5 and 19 and lowest for adult men. This was most clear in the ward encompassing the three high-incidence villages where the risk of plague among children aged 10-14 was 2.2 times higher than for adults aged 30-34, and among adults aged 30-34, the risk was 2.4 times higher for women than men.

Aethomys is a common and widespread rodent genus in the African savannas and grasslands. However, its systematics and taxonomy are still unclear as no study has covered the entire range. In fact it might not be a monophyletic genus and perhaps should be split into two subgenera, Micaelamys and Aethomys. In this paper, we present findings based on the cytogenetics and the entire cytochrome b sequence of two species from Zambia (A. kaiseri) and Tanzania (A. chrysophilus), and we compare them with the sequences of a South African species (A. namaquensis) and other allied muroid genera. Comparison of the banded chromosomes revealed complete G-band homology between the autosomes of the two species. However, the X and Y chromosomes clearly differ in size and in C- and G-banding, being much larger in A. kaiseri. Comparison of the cytochrome b sequences places the separation between A. kaiseri and A. chrysophilus at 4.49 Mya, a period of intense speciation in other African muroids. The resulting phylogeny strongly supports the idea of a paraphyletic group, suggesting the need to elevate the previously described subgenera to the genus rank.

Rodents were live-trapped in selected plague-inflicted villages from June 1980 to March 1988. Flea infestation rates were determined and the animals were serologically tested for plague. Clinically suspected and clinically healthy people in the affected areas were similarly tested for plague antibodies. Of 1596 rodent sera tested, 91 (5.7%) were positive for plague. These were mostly from Rattus rattus, Mastomys natalensis, Otomys spp. and Pelomys fallax. A total of 1772 fleas, of which Dinopsyllus lypusus, Xenopsylla brasiliensis and Ctenophthalmus calceatus comprised the largest proportion, was collected from the captured rodents. Total flea indices ranged from 0.67 to 1.12 fleas per rodent. A total of 2809 human cases and a mortality rate of 10.2% were recorded in 1980-1988. It was concluded that most rodent species in the area were suitable reservoirs of plague and that D. lypusus, X. brasiliensis and C. calceatus were probably responsible for transmitting the pathogen. Lack of effective quarantine measures during outbreaks was partly responsible for the spread of the disease to many villages, while inadequate rodent and flea control and poor sanitary measures could be responsible for continued outbreaks of plague in the area.

Outbreaks of human plague have been occurring in the Western Usambara mountains since 1980, involving many cases and deaths. Epidemiological surveys and control activities were carried out from June 1980 to May 1990. Rodents were trapped live, identified and serologically tested for plague, using the passive haemagglutination and passive haemagglutination inhibition tests. Rodent fleas were collected, processed, identified and counted. House fleas were caught with light traps and similarly treated. People and domestic carnivores were serologically tested for the disease. Various plague control measures were undertaken. A total of 2433 animals, 2254 rodent fleas and 1366 house fleas were collected. Average indices of rodent and house fleas were 0.93 and 5.38 respectively. Rattus rattus and Mastomys natalensis were the most abundant rodent species. Xenopsylla brasiliensis and Dinopsyllus lypusus were their commonest flea ectoparasites while Pulex irritans was the major house flea. Of 2044 rodent, 1880 human and 176 dog sera tested, 5.5%, 0.5% and 6.3% respectively were positive. It was concluded that plague was active in the focus despite the control measures and that common reservoirs and efficient vectors were present. It was suggested that dogs were probably involved in the epidemiology of the disease, that P. irritans was not susceptible to the insecticide used and that the flea was probably involved in murine plague transmission. Bacteriological research on the causative agent to establish the nature of its long persistence in the area and maintenance of a surveillance service are recommended.