46 results on '"Krishnendu Roy"'
Search Results
2. p38MAPK guards the integrity of endosomal compartments through regulating necrotic death
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Jia Yao, Svetlana Atasheva, Randall Toy, Emmeline L. Blanchard, Philip J. Santangelo, Krishnendu Roy, Edward S. Mocarski, and Dmitry M. Shayakhmetov
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Medicine ,Science - Abstract
Abstract Pathogens trigger activation of sensors of the innate immune system that initiate molecular signaling enabling appropriate host defense programs. Although recognition of pathogen-specific moieties or PAMPs by specialized receptors of the immune system is well defined for a great number of pathogens, the mechanisms of sensing of pathogen-induced functional perturbations to the host cell remain poorly understood. Here we show that the disruption of endosomal compartments in macrophages by a bacterium or fully synthetic nanoparticles activates stress-response p38MAPK kinase, which triggers execution of cell death of a necrotic type. p38MAPK-mediated necrosis occurs in cells with a compound homozygous deletion of pyroptosis-inducing caspases-1 and -11, apoptotic caspase-8, and necroptosis-inducing receptor-interacting protein kinase-3 (RIPK3), indicating that all of these principal cell death mediators are dispensable for p38MAPK-induced necrosis in response to endosome rupture. p38MAPK-mediated necrosis is suppressed by the receptor-interacting protein kinase 1, RIPK1, and degradation of RIPK1 sensitizes macrophages to necrotic death. Since pathogen-induced cell death of necrotic types is implicated in host defense against infection, our results indicate that functional perturbations in host cells are sensed as a component of the innate immune system.
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- 2022
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3. Mesenchymal stromal cells for bone trauma, defects, and disease: Considerations for manufacturing, clinical translation, and effective treatments
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Annie C. Bowles-Welch, Angela C. Jimenez, Hazel Y. Stevens, David A. Frey Rubio, Linda E. Kippner, Carolyn Yeago, and Krishnendu Roy
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Mesenchymal stromal cells ,Cell therapy ,Biomanufacturing ,Bone trauma ,Bone defects ,Bone disease ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Bone is a complex tissue capable of natural repair to injury, however, the healing process is often impaired by the untoward effects of trauma, defects, and disease. Thus, therapeutic modalities, including the use of cells involved in the body's natural healing processes, are investigated to promote or complement natural bone repair. Herein, several modalities and innovative approaches for using mesenchymal stromal cells (MSCs) to treat bone trauma, defects, and diseases are discussed. Given the evidence that supports the promising potential of MSCs, we highlight important considerations for advancing the clinical use of MSCs including the standardization of procedures from the harvest to delivery to patients and realized solutions to manufacturing. A better understanding of the current approaches implemented to address the challenges of using therapeutic MSCs will help improve study designs and, ultimately, achieve effective outcomes for restoring bone health.
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- 2023
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4. Single-cell RNA-seq of out-of-thaw mesenchymal stromal cells shows tissue-of-origin differences and inter-donor cell-cycle variations
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Camila Medrano-Trochez, Paramita Chatterjee, Pallab Pradhan, Hazel Y. Stevens, Molly E. Ogle, Edward A. Botchwey, Joanne Kurtzberg, Carolyn Yeago, Greg Gibson, and Krishnendu Roy
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MSC ,Cell therapy ,Bone marrow derived MSC (BM-MSC) ,Cord tissue derived MSC (CT-MSC) ,scRNA-seq ,Medicine (General) ,R5-920 ,Biochemistry ,QD415-436 - Abstract
Abstract Background Human Mesenchymal stromal cells (hMSCs) from various tissue sources are widely investigated in clinical trials. These MSCs are often administered to patients immediately after thawing the cryopreserved product (out-of-thaw), yet little is known about the single-cell transcriptomic landscape and tissue-specific differences of out-of-thaw human MSCs. Methods 13 hMSC samples derived from 10 “healthy” donors were used to assess donor variability and tissue-of-origin differences in single-cell gene expression profiles. hMSCs derived and expanded from the bone marrow (BM) or cord tissue (CT) underwent controlled-rate freezing for 24 h. Cells were then transferred to the vapor phase of liquid nitrogen for cryopreservation. hMSCs cryopreserved for at least one week, were characterized immediately after thawing using a droplet-based single-cell RNA sequencing method. Data analysis was performed with SC3 and SEURAT pipelines followed by gene ontology analysis. Results scRNA-seq analysis of the hMSCs revealed two major clusters of donor profiles, which differ in immune-signaling, cell surface properties, abundance of cell-cycle related transcripts, and metabolic pathways of interest. Within-sample transcriptomic heterogeneity is low. We identified numerous differentially expressed genes (DEGs) that are associated with various cellular functions, such as cytokine signaling, cell proliferation, cell adhesion, cholesterol/steroid biosynthesis, and regulation of apoptosis. Gene-set enrichment analyses indicated different functional pathways in BM vs. CT hMSCs. In addition, MSC-batches showed significant variations in cell cycle status, suggesting different proliferative vs. immunomodulatory potential. Several potential transcript-markers for tissue source differences were identified for further investigation in future studies. In functional assays, both BM and CT MSCs suppressed macrophage TNFα secretion upon interferon stimulation. However, differences between donors, tissue-of-origin, and cell cycle are evident in both TNF suppression and cytokine secretion. Conclusions This study shows that donor differences in hMSC transcriptome are minor relative to the intrinsic differences in tissue-of-origin. hMSCs with different transcriptomic profiles showed potential differences in functional characteristics. These findings contribute to our understanding of tissue origin-based differences in out-of-thaw therapeutic hMSC products and assist in the identification of cells with immune-regulatory or survival potential from a heterogeneous MSC population. Our results form the basis of future studies in correlating single-cell transcriptomic markers with immunomodulatory functions.
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- 2021
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5. Systemic Immune Modulation Alters Local Bone Regeneration in a Delayed Treatment Composite Model of Non-Union Extremity Trauma
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Casey E. Vantucci, Tyler Guyer, Kelly Leguineche, Paramita Chatterjee, Angela Lin, Kylie E. Nash, Molly Ann Hastings, Travis Fulton, Clinton T. Smith, Drishti Maniar, David A. Frey Rubio, Kaya Peterson, Julia Andraca Harrer, Nick J. Willett, Krishnendu Roy, and Robert E. Guldberg
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immune dysregulation ,non-union ,musculoskeletal trauma ,MDSCs ,S100A8/A9 ,Surgery ,RD1-811 - Abstract
Bone non-unions resulting from severe traumatic injuries pose significant clinical challenges, and the biological factors that drive progression towards and healing from these injuries are still not well understood. Recently, a dysregulated systemic immune response following musculoskeletal trauma has been identified as a contributing factor for poor outcomes and complications such as infections. In particular, myeloid-derived suppressor cells (MDSCs), immunosuppressive myeloid-lineage cells that expand in response to traumatic injury, have been highlighted as a potential therapeutic target to restore systemic immune homeostasis and ultimately improve functional bone regeneration. Previously, we have developed a novel immunomodulatory therapeutic strategy to deplete MDSCs using Janus gold nanoparticles that mimic the structure and function of antibodies. Here, in a preclinical delayed treatment composite injury model of bone and muscle trauma, we investigate the effects of these nanoparticles on circulating MDSCs, systemic immune profiles, and functional bone regeneration. Unexpectedly, treatment with the nanoparticles resulted in depletion of the high side scatter subset of MDSCs and an increase in the low side scatter subset of MDSCs, resulting in an overall increase in total MDSCs. This overall increase correlated with a decrease in bone volume (P = 0.057) at 6 weeks post-treatment and a significant decrease in mechanical strength at 12 weeks post-treatment compared to untreated rats. Furthermore, MDSCs correlated negatively with endpoint bone healing at multiple timepoints. Single cell RNA sequencing of circulating immune cells revealed differing gene expression of the SNAb target molecule S100A8/A9 in MDSC sub-populations, highlighting a potential need for more targeted approaches to MDSC immunomodulatory treatment following trauma. These results provide further insights on the role of systemic immune dysregulation for severe trauma outcomes in the case of non-unions and composite injuries and suggest the need for additional studies on targeted immunomodulatory interventions to enhance healing.
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- 2022
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6. Lipid Membrane‐Based Antigen Presentation to B Cells Using a Fully Synthetic Ex Vivo Germinal Center Model
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Liana Kramer, Hannah W. Song, Kaiya Mitchell, Mythili Kartik, Ritika Jain, Victoria Lozano Escarra, Enrique Quiros, Harrison Fu, Ankur Singh, and Krishnendu Roy
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antigen ,B cell receptors ,B cells ,liposomes ,vaccine ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
High‐affinity antigen‐specific B cells are generated within specialized structures, germinal centers (GCs), inside lymphoid organs. In GCs, follicular dendritic cells (FDCs) present antigens on their membrane surface to cognate B cells, inducing rapid proliferation and differentiation of the B cells toward antibody‐secreting cells. The FDC's fluid membrane surface allows B cells to “pull” the antigens into clusters and internalize them, a process that frequently involves tearing off and internalizing FDC membrane fragments. To study this process ex vivo, liposomal membranes are used as the antigen‐presenting FDC‐like fluid lipid surface to activate B cells. In a fully synthetic in vitro GC model (sGC), which uses the microbead‐based presentation of the CD40 Ligand and a cytokine cocktail to mimic T follicular helper cell signals to B cells, liposomes presenting a model antigen mimic effectively engage B cell receptors (BCRs) and induce greater BCR clustering compared to soluble antigens, resulting in rapid antigen internalization and proliferation of the B cells. B cells showed GC‐like reactions and undergo efficient IgG1 class‐switching. Taken together, the results suggest that fluid membrane‐bound antigen induces a strong GC response and provides a novel synthetic in vitro system for studying GC biology in health and diseases, and for expanding therapeutic B cells ex vivo.
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- 2022
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7. Predicting T‐cell quality during manufacturing through an artificial intelligence‐based integrative multiomics analytical platform
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Valerie Y. Odeh‐Couvertier, Nathan J. Dwarshuis, Maxwell B. Colonna, Bruce L. Levine, Arthur S. Edison, Theresa Kotanchek, Krishnendu Roy, and Wandaliz Torres‐Garcia
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artificial intelligence ,bioprocess optimization ,cell therapy manufacturing ,cytokines ,design of experiments ,metabolomics ,Chemical engineering ,TP155-156 ,Biotechnology ,TP248.13-248.65 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Abstract Large‐scale, reproducible manufacturing of therapeutic cells with consistently high quality is vital for translation to clinically effective and widely accessible cell therapies. However, the biological and logistical complexity of manufacturing a living product, including challenges associated with their inherent variability and uncertainties of process parameters, currently make it difficult to achieve predictable cell‐product quality. Using a degradable microscaffold‐based T‐cell process, we developed an artificial intelligence (AI)‐driven experimental‐computational platform to identify a set of critical process parameters and critical quality attributes from heterogeneous, high‐dimensional, time‐dependent multiomics data, measurable during early stages of manufacturing and predictive of end‐of‐manufacturing product quality. Sequential, design‐of‐experiment‐based studies, coupled with an agnostic machine‐learning framework, were used to extract feature combinations from early in‐culture media assessment that were highly predictive of the end‐product CD4/CD8 ratio and total live CD4+ and CD8+ naïve and central memory T cells (CD63L+CCR7+). Our results demonstrate a broadly applicable platform tool to predict end‐product quality and composition from early time point in‐process measurements during therapeutic cell manufacturing.
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- 2022
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8. Polymeric Pathogen-Like Particles-Based Combination Adjuvants Elicit Potent Mucosal T Cell Immunity to Influenza A Virus
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Brock Kingstad-Bakke, Randall Toy, Woojong Lee, Pallab Pradhan, Gabriela Vogel, Chandranaik B. Marinaik, Autumn Larsen, Daisy Gates, Tracy Luu, Bhawana Pandey, Yoshihoro Kawaoka, Krishnendu Roy, and M. Suresh
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adjuvants ,CD8 ,tissue-resident memory ,CD4 ,influenza A virus ,vaccine ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Eliciting durable and protective T cell-mediated immunity in the respiratory mucosa remains a significant challenge. Polylactic-co-glycolic acid (PLGA)-based cationic pathogen-like particles (PLPs) loaded with TLR agonists mimic biophysical properties of microbes and hence, simulate pathogen-pattern recognition receptor interactions to safely and effectively stimulate innate immune responses. We generated micro particle PLPs loaded with TLR4 (glucopyranosyl lipid adjuvant, GLA) or TLR9 (CpG) agonists, and formulated them with and without a mucosal delivery enhancing carbomer-based nanoemulsion adjuvant (ADJ). These adjuvants delivered intranasally to mice elicited high numbers of influenza nucleoprotein (NP)-specific CD8+ and CD4+ effector and tissue-resident memory T cells (TRMs) in lungs and airways. PLPs delivering TLR4 versus TLR9 agonists drove phenotypically and functionally distinct populations of effector and memory T cells. While PLPs loaded with CpG or GLA provided immunity, combining the adjuvanticity of PLP-GLA and ADJ markedly enhanced the development of airway and lung TRMs and CD4 and CD8 T cell-dependent immunity to influenza virus. Further, balanced CD8 (Tc1/Tc17) and CD4 (Th1/Th17) recall responses were linked to effective influenza virus control. These studies provide mechanistic insights into vaccine-induced pulmonary T cell immunity and pave the way for the development of a universal influenza and SARS-CoV-2 vaccines.
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- 2021
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9. Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells.
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Woojong Lee, Brock Kingstad-Bakke, Brett Paulson, Autumn Larsen, Katherine Overmyer, Chandranaik B Marinaik, Kelly Dulli, Randall Toy, Gabriela Vogel, Katherine P Mueller, Kelsey Tweed, Alex J Walsh, Jason Russell, Krishanu Saha, Leticia Reyes, Melissa C Skala, John-Demian Sauer, Dmitry M Shayakhmetov, Joshua Coon, Krishnendu Roy, and M Suresh
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
There is a critical need for adjuvants that can safely elicit potent and durable T cell-based immunity to intracellular pathogens. Here, we report that parenteral vaccination with a carbomer-based adjuvant, Adjuplex (ADJ), stimulated robust CD8 T-cell responses to subunit antigens and afforded effective immunity against respiratory challenge with a virus and a systemic intracellular bacterial infection. Studies to understand the metabolic and molecular basis for ADJ's effect on antigen cross-presentation by dendritic cells (DCs) revealed several unique and distinctive mechanisms. ADJ-stimulated DCs produced IL-1β and IL-18, suggestive of inflammasome activation, but in vivo activation of CD8 T cells was unaffected in caspase 1-deficient mice. Cross-presentation induced by TLR agonists requires a critical switch to anabolic metabolism, but ADJ enhanced cross presentation without this metabolic switch in DCs. Instead, ADJ induced in DCs, an unique metabolic state, typified by dampened oxidative phosphorylation and basal levels of glycolysis. In the absence of increased glycolytic flux, ADJ modulated multiple steps in the cytosolic pathway of cross-presentation by enabling accumulation of degraded antigen, reducing endosomal acidity and promoting antigen localization to early endosomes. Further, by increasing ROS production and lipid peroxidation, ADJ promoted antigen escape from endosomes to the cytosol for degradation by proteasomes into peptides for MHC I loading by TAP-dependent pathways. Furthermore, we found that induction of lipid bodies (LBs) and alterations in LB composition mediated by ADJ were also critical for DC cross-presentation. Collectively, our model challenges the prevailing metabolic paradigm by suggesting that DCs can perform effective DC cross-presentation, independent of glycolysis to induce robust T cell-dependent protective immunity to intracellular pathogens. These findings have strong implications in the rational development of safe and effective immune adjuvants to potentiate robust T-cell based immunity.
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- 2021
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10. Molecular Crosstalk Between Macrophages and Mesenchymal Stromal Cells
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Hazel Y. Stevens, Annie C. Bowles, Carolyn Yeago, and Krishnendu Roy
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macrophages (M1/M2) ,mechanism of action (MOA) ,immunomodulation ,cell therapy ,mesenchymal stromal (or stem) cells ,Biology (General) ,QH301-705.5 - Abstract
Mesenchymal stromal cells (MSCs) have been widely investigated for regenerative medicine applications, from treating various inflammatory diseases as a cell therapy to generating engineered tissue constructs. Numerous studies have evaluated the potential effects of MSCs following therapeutic administration. By responding to their surrounding microenvironment, MSCs may mediate immunomodulatory effects through various mechanisms that directly (i.e., contact-dependent) or indirectly (i.e., paracrine activity) alter the physiology of endogenous cells in various disease pathologies. More specifically, a pivotal crosstalk between MSCs and tissue-resident macrophages and monocytes (TMφ) has been elucidated using in vitro and in vivo preclinical studies. An improved understanding of this crosstalk could help elucidate potential mechanisms of action (MOAs) of therapeutically administered MSCs. TMφ, by nature of their remarkable functional plasticity and prevalence within the body, are uniquely positioned as critical modulators of the immune system – not only in maintaining homeostasis but also during pathogenesis. This has prompted further exploration into the cellular and molecular alterations to TMφ mediated by MSCs. In vitro assays and in vivo preclinical trials have identified key interactions mediated by MSCs that polarize the responses of TMφ from a pro-inflammatory (i.e., classical activation) to a more anti-inflammatory/reparative (i.e., alternative activation) phenotype and function. In this review, we describe physiological and pathological TMφ functions in response to various stimuli and discuss the evidence that suggest specific mechanisms through which MSCs may modulate TMφ phenotypes and functions, including paracrine interactions (e.g., secretome and extracellular vesicles), nanotube-mediated intercellular exchange, bioenergetics, and engulfment by macrophages. Continued efforts to elucidate this pivotal crosstalk may offer an improved understanding of the immunomodulatory capacity of MSCs and inform the development and testing of potential MOAs to support the therapeutic use of MSCs and MSC-derived products in various diseases.
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- 2020
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11. NADPH oxidase 1 is highly expressed in human large and small bowel cancers.
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Jiamo Lu, Guojian Jiang, Yongzhong Wu, Smitha Antony, Jennifer L Meitzler, Agnes Juhasz, Han Liu, Krishnendu Roy, Hala Makhlouf, Rodrigo Chuaqui, Donna Butcher, Mariam M Konaté, and James H Doroshow
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Medicine ,Science - Abstract
To facilitate functional investigation of the role of NADPH oxidase 1 (NOX1) and associated reactive oxygen species in cancer cell signaling, we report herein the development and characterization of a novel mouse monoclonal antibody that specifically recognizes the C-terminal region of the NOX1 protein. The antibody was validated in stable NOX1 overexpression and knockout systems, and demonstrates wide applicability for Western blot analysis, confocal microscopy, flow cytometry, and immunohistochemistry. We employed our NOX1 antibody to characterize NOX1 expression in a panel of 30 human colorectal cancer cell lines, and correlated protein expression with NOX1 mRNA expression and superoxide production in a subset of these cells. Although a significant correlation between oncogenic RAS status and NOX1 mRNA levels could not be demonstrated in colon cancer cell lines, RAS mutational status did correlate with NOX1 expression in human colon cancer surgical specimens. Immunohistochemical analysis of a comprehensive set of tissue microarrays comprising over 1,200 formalin-fixed, paraffin-embedded tissue cores from human epithelial tumors and inflammatory disease confirmed that NOX1 is overexpressed in human colon and small intestinal adenocarcinomas, as well as adenomatous polyps, compared to adjacent, uninvolved intestinal mucosae. In contradistinction to prior studies, we did not find evidence of NOX1 overexpression at the protein level in tumors versus histologically normal tissues in prostate, lung, ovarian, or breast carcinomas. This study constitutes the most comprehensive histopathological characterization of NOX1 to date in cellular models of colon cancer and in normal and malignant human tissues using a thoroughly evaluated monoclonal antibody. It also further establishes NOX1 as a clinically relevant therapeutic target in colorectal and small intestinal cancer.
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- 2020
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12. Decoding NADPH oxidase 4 expression in human tumors
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Jennifer L. Meitzler, Hala R. Makhlouf, Smitha Antony, Yongzhong Wu, Donna Butcher, Guojian Jiang, Agnes Juhasz, Jiamo Lu, Iris Dahan, Pidder Jansen-Dürr, Haymo Pircher, Ajay M. Shah, Krishnendu Roy, and James H. Doroshow
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NOX4 ,NADPH oxidase ,Monoclonal antibody ,Tissue microarray ,Ovarian cancer ,Melanoma ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
NADPH oxidase 4 (NOX4) is a redox active, membrane-associated protein that contributes to genomic instability, redox signaling, and radiation sensitivity in human cancers based on its capacity to generate H2O2 constitutively. Most studies of NOX4 in malignancy have focused on the evaluation of a small number of tumor cell lines and not on human tumor specimens themselves; furthermore, these studies have often employed immunological tools that have not been well characterized. To determine the prevalence of NOX4 expression across a broad range of solid tumors, we developed a novel monoclonal antibody that recognizes a specific extracellular region of the human NOX4 protein, and that does not cross-react with any of the other six members of the NOX gene family. Evaluation of 20 sets of epithelial tumors revealed, for the first time, high levels of NOX4 expression in carcinomas of the head and neck (15/19 patients), esophagus (12/18 patients), bladder (10/19 patients), ovary (6/17 patients), and prostate (7/19 patients), as well as malignant melanoma (7/15 patients) when these tumors were compared to histologically-uninvolved specimens from the same organs. Detection of NOX4 protein upregulation by low levels of TGF-β1 demonstrated the sensitivity of this new probe; and immunofluorescence experiments found that high levels of endogenous NOX4 expression in ovarian cancer cells were only demonstrable associated with perinuclear membranes. These studies suggest that NOX4 expression is upregulated, compared to normal tissues, in a well-defined, and specific group of human carcinomas, and that its expression is localized on intracellular membranes in a fashion that could modulate oxidative DNA damage.
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- 2017
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13. Combinatorial Delivery of Dual and Triple TLR Agonists via Polymeric Pathogen-like Particles Synergistically Enhances Innate and Adaptive Immune Responses
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Ranjna Madan-Lala, Pallab Pradhan, and Krishnendu Roy
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Medicine ,Science - Abstract
Abstract Despite decades of research very few vaccine-adjuvants have received FDA approval. Two fundamental challenges plague clinical translation of vaccine-adjuvants: reducing acute toxicities that result from systemic diffusion of many soluble adjuvants, and delivering multiple adjuvants at the same time to mimic the synergistic immune-stimulation of pathogens, while being safe. In order to address these barriers, we evaluated combinations of four clinically relevant immune-agonists, specifically Toll-like receptor (TLR) ligands, using biodegradable, polymer microparticles. We tested them alone and in combinations of 2 or 3, for a total of 10 unique conditions. We evaluated primary bone-marrow-derived Dendritic Cell phenotypes and functionality, and identified several synergistic combinations. We picked a dual and a triple adjuvant combination, TLR4/TLR9 and TLR4/TLR7/TLR9, for further evaluation and found that both combinations promoted antigen cross-presentation in vitro. Studies in mice using the model antigen Ovalbumin, showed that both combinations enhanced lymph node germinal center and T follicular helper cell responses. The triple adjuvant combination showed increased antigen-specific antibody titer with an overall balanced Th1/Th2 response, while the dual combination promoted Th1-polarized IgG responses. Our results show how polymeric particulate-carriers can be adopted to safely deliver combinatorial adjuvants and selectively synergize specific types of immune responses for vaccine applications.
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- 2017
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14. Biophysical Attributes of CpG Presentation Control TLR9 Signaling to Differentially Polarize Systemic Immune Responses
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Jardin A. Leleux, Pallab Pradhan, and Krishnendu Roy
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TLR9 ,dendritic cells ,PAMP ,adjuvant density ,vaccines ,PLGA ,immunotherapy ,immune modulation ,vaccine delivery ,adjuvant delivery ,Biology (General) ,QH301-705.5 - Abstract
It is currently unknown whether and how mammalian pathogen recognition receptors (PRRs) respond to biophysical patterns of pathogen-associated molecular danger signals. Using synthetic pathogen-like particles (PLPs) that mimic physical properties of bacteria or large viruses, we have discovered that the quality and quantity of Toll-like receptor 9 (TLR9) signaling by CpG in mouse dendritic cells (mDCs) are uniquely dependent on biophysical attributes; specifically, the surface density of CpG and size of the presenting PLP. These physical patterns control DC programming by regulating the kinetics and magnitude of MyD88-IRAK4 signaling, NF-κB-driven responses, and STAT3 phosphorylation, which, in turn, controls differential T cell responses and in vivo immune polarization, especially T helper 1 (Th1) versus T helper 2 (Th2) antibody responses. Our findings suggest that innate immune cells can sense and respond not only to molecular but also pathogen-associated physical patterns (PAPPs), broadening the tools for modulating immunity and helping to better understand innate response mechanisms to pathogens and develop improved vaccines.
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- 2017
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15. Micromineral status of soil, salt-tolerant plants and goats in tidal estuarine ecosystem of Indian Sundarban
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SARBASWARUP GHOSH, JOYDIP MUKHERJEE, MONIDIPTA SAHA, KRISHNENDU ROY, NARAYAN CHANDRA SAHU, and ALOK KUMAR HAZRA
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Black Bengal goat ,Estuarine ecosystem ,Mangrove ,Micromineral ,Animal culture ,SF1-1100 - Abstract
It could be concluded that tidal coastal zones contain high level of micro-minerals in soil and plants. Paradoxically, local goats inhabiting in this particular ecosystem are deficient in Fe, Cu and Mn. This might be an adaptive response of animals in that area. Tanins are well-known inhibitor of Fe absorption from intestine. Regular consumption of tanins and other plant alkaloids during grazing and browsing might also be responsible for low bio-availability of the minerals in the plasma. Further research is warranted to have more insight on mineral status of small ruminants in fascinating ecosystem of Sundarbans.
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- 2019
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16. A polyvalent inactivated rhinovirus vaccine is broadly immunogenic in rhesus macaques
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Sujin Lee, Minh Trang Nguyen, Michael G. Currier, Joe B. Jenkins, Elizabeth A. Strobert, Adriana E. Kajon, Ranjna Madan-Lala, Yury A. Bochkov, James E. Gern, Krishnendu Roy, Xiaoyan Lu, Dean D. Erdman, Paul Spearman, and Martin L. Moore
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Science - Abstract
Existence of 150–170 serologically distinct human rhinoviruses (HRV) has hampered vaccine development for this human pathogen. Here, the authors show that a prime-boost regimen with an inactivated 50-valent HRV vaccine induces neutralizing antibody responses to diverse HRV serotypes in rhesus macaques.
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- 2016
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17. Enteric parasitic infection among antiretroviral therapy Naïve HIV-seropositive people: Infection begets infection-experience from Eastern India
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Suman Mitra, Anindya Mukherjee, Dibbendhu Khanra, Ananya Bhowmik, Krishnendu Roy, and Arunansu Talukdar
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Case-control ,HIV ,parasitic opportunistic infections ,Infectious and parasitic diseases ,RC109-216 - Abstract
Context: Parasitic opportunistic infections (POIs) frequently occur in HIV/AIDS patients and affect the quality of life. Aims: This study assessing the standard organisms in the stool of HIV-positive patients, their comparison with HIV-negative controls, their relation with various factors, is the first of its kind in the eastern part of India. Settings and Design: hospital-based case-control study. Materials and Methods: A total of 194 antiretroviral therapy naïve HIV-positive patients (18-60 years) were taken as cases and 98 age- and sex-matched HIV-negative family members as controls. Demographical, clinical, biochemical, and microbiological parameters were studied. Statistical Analysis Used: Odds ratio, 95% confidence interval, and P (< 0.05 is to be significant) were calculated using Epi Info 7 software. Results: POI was significantly higher among HIV-seropositive cases (61.86%) (P < 0.001). Cryptosporidium was the most common POI in HIV-seropositive patients overall and without diarrhea; Entameba was the most common POI in patients with acute diarrhea, and Isospora was the most common POI in the patients having chronic diarrhea. Entameba was the most common POI in CD4 count 350 cells/μl Cryptosporidium was the most common POI. Mean CD4 count was significantly (P < 0.001) lower among people having multiple infections. Male sex, hemoglobin
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- 2016
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18. Gene expression profile and functionality of ESC-derived Lin-ckit+Sca-1+ cells are distinct from Lin-ckit+Sca-1+ cells isolated from fetal liver or bone marrow.
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Irina Fernandez, Krista M Fridley, Dhivya Arasappan, Rosalind V Ambler, Philip W Tucker, and Krishnendu Roy
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Medicine ,Science - Abstract
In vitro bioreactor-based cultures are being extensively investigated for large-scale production of differentiated cells from embryonic stem cells (ESCs). However, it is unclear whether in vitro ESC-derived progenitors have similar gene expression profiles and functionalities as their in vivo counterparts. This is crucial in establishing the validity of ESC-derived cells as replacements for adult-isolated cells for clinical therapies. In this study, we compared the gene expression profiles of Lin-ckit+Sca-1+ (LKS) cells generated in vitro from mouse ESCs using either static or bioreactor-based cultures, with that of native LKS cells isolated from mouse fetal liver (FL) or bone marrow (BM). We found that in vitro-generated LKS cells were more similar to FL- than to BM LKS cells in gene expression. Further, when compared to cells derived from bioreactor cultures, static culture-derived LKS cells showed fewer differentially expressed genes relative to both in vivo LKS populations. Overall, the expression of hematopoietic genes was lower in ESC-derived LKS cells compared to cells from BM and FL, while the levels of non-hematopoietic genes were up-regulated. In order to determine if these molecular profiles correlated with functionality, we evaluated ESC-derived LKS cells for in vitro hematopoietic-differentiation and colony formation (CFU assay). Although static culture-generated cells failed to form any colonies, they did differentiate into CD11c+ and B220+ cells indicating some hematopoietic potential. In contrast, bioreactor-derived LKS cells, when differentiated under the same conditions failed to produce any B220+ or CD11c+ cells and did not form colonies, indicating that these cells are not hematopoietic progenitors. We conclude that in vitro culture conditions significantly affect the transcriptome and functionality of ESC-derived LKS cells and although in vitro differentiated LKS cells were lineage negative and expressed both ckit and Sca-1, these cells, especially those obtained from dynamic cultures, are significantly different from native cells of the same phenotype.
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- 2012
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19. A multiadjuvant polysaccharide-amino acid-lipid (PAL) subunit nanovaccine generates robust systemic and lung-specific mucosal immune responses against SARS-CoV-2 in mice
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Bhawana Pandey, Zhengying Wang, Angela Jimenez, Eshant Bhatia, Ritika Jain, Alexander Beach, Drishti Maniar, Justin Hosten, Laura O’Farrell, Casey Vantucci, David Hur, Richard Noel, Rachel Ringuist, Clinton Smith, Miguel A. Ochoa, and Krishnendu Roy
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Article - Abstract
Existing parenteral SARS-CoV-2 vaccines produce only limited mucosal responses, which are essential for reducing transmission and achieving sterilizing immunity. Appropriately designed mucosal boosters could overcome the shortcomings of parenteral vaccines and enhance pre- existing systemic immunity. Here we present a new protein subunit nanovaccine using multiadjuvanted (e.g. RIG-I: PUUC, TLR9: CpG) polysaccharide-amino acid-lipid nanoparticles (PAL-NPs) that can be delivered both intramuscularly (IM) and intranasally (IN) to generate balanced mucosal-systemic SARS-CoV-2 immunity. Mice receiving IM-Prime PUUC+CpG PAL- NPs, followed by an IN-Boost, developed high levels of IgA, IgG, and cellular immunity in the lung, and showed robust systemic humoral immunity. Interestingly, as a purely intranasal vaccine (IN-Prime/IN-Boost), PUUC+CpG PAL-NPs induced stronger lung-specific T cell immunity than IM-Prime/IN-Boost, and a comparable IgA and neutralizing antibodies, although with a lower systemic antibody response, indicating that a fully mucosal delivery route for SARS-CoV-2 vaccination may also be feasible. Our data suggest that PUUC+CpG PAL-NP subunit vaccine is a promising candidate for generating SARS-CoV-2 specific mucosal immunity.
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- 2023
20. Keeping Myeloma in Check: The Past, Present and Future of Immunotherapy in Multiple Myeloma
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Lawrence H. Boise, Miguel Armenta Ochoa, James Ackley, Krishnendu Roy, Sagar Lonial, and Delta Ghoshal
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Cancer Research ,Adoptive cell transfer ,medicine.medical_treatment ,Context (language use) ,Review ,Plasma cell ,bi-specific antibody ,Immune system ,antibody ,vaccine ,medicine ,IMiD ,Multiple myeloma ,RC254-282 ,biology ,business.industry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immunotherapy ,medicine.disease ,CAR-T ,multiple myeloma ,medicine.anatomical_structure ,Oncology ,ADC ,Cancer research ,biology.protein ,Bone marrow ,immunotherapy ,Antibody ,business - Abstract
Simple Summary Multiple myeloma is the second most common hematological malignancy and while patients can have long responses to therapy, most patients will eventually develop treatment-resistant disease. Over the last thirty years, improved understanding of multiple myeloma and therapeutic advancements have dramatically improved outcomes for patients. Recently, advances in immunotherapy have revolutionized standard-of-care therapies and provided therapeutic options for patients with heavily pretreated, relapsed refractory multiple myeloma. Immunotherapy is a rapidly evolving field, and this review encompasses the immunotherapies that are currently used to treat myeloma patients as well as recent advances that are poised to advance myeloma therapeutics in the coming years. Abstract Multiple myeloma is an incurable disease of malignant plasma cells and an ideal target for modern immune therapy. The unique plasma cell biology maintained in multiple myeloma, coupled with its hematological nature and unique bone marrow microenvironment, provide an opportunity to design specifically targeted immunotherapies that selectively kill transformed cells with limited on-target off-tumor effects. Broadly defined, immune therapy is the utilization of the immune system and immune agents to treat a disease. In the context of multiple myeloma, immune therapy can be subdivided into four main categories: immune modulatory imide drugs, targeted antibodies, adoptive cell transfer therapies, and vaccines. In recent years, advances in all four of these categories have led to improved therapies with enhanced antitumor activity and specificity. In IMiDs, modified chemical structures have been developed that improve drug potency while reducing dose limiting side effects. Targeted antibody therapies have resulted from the development of new selectively expressed targets as well as the development of antibody drug conjugates and bispecific antibodies. Adoptive cell therapies, particularly CAR-T therapies, have been enhanced through improvements in the manufacturing process, as well as through the development of CAR constructs that enhance CAR-T activation and provide protection from a suppressive immune microenvironment. This review will first cover in-class breakthrough therapies for each of these categories, as well as therapies currently utilized in the clinic. Additionally, this review will explore up and coming therapeutics in the preclinical and clinical trial stage.
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- 2021
21. Polymeric Pathogen-Like Particles-Based Combination Adjuvants Elicit Potent Mucosal T Cell Immunity to Influenza A Virus
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Randall Toy, Krishnendu Roy, Chandranaik B. Marinaik, M. Suresh, Bhawana Pandey, Brock Kingstad-Bakke, Gabriela Vogel, Autumn Larsen, Woojong Lee, Daisy Gates, Yoshihoro Kawaoka, Pallab Pradhan, and Tracy Luu
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lcsh:Immunologic diseases. Allergy ,medicine.medical_treatment ,Immunology ,tissue-resident memory ,medicine.disease_cause ,Virus ,Cell Line ,Madin Darby Canine Kidney Cells ,Mice ,Dogs ,Adjuvants, Immunologic ,Orthomyxoviridae Infections ,Polylactic Acid-Polyglycolic Acid Copolymer ,Immunity ,Adjuvanticity ,vaccine ,Influenza A virus ,medicine ,Immunology and Allergy ,Animals ,influenza A virus ,Intraepithelial Lymphocytes ,Lung ,Original Research ,Immunity, Cellular ,Innate immune system ,Chemistry ,TLR9 ,CD8 ,polyfunctional ,Immunity, Innate ,CD4 ,Mice, Inbred C57BL ,Toll-Like Receptor 4 ,adjuvants ,lcsh:RC581-607 ,Adjuvant ,Immunologic Memory - Abstract
Eliciting durable and protective T cell-mediated immunity in the respiratory mucosa remains a significant challenge. Polylactic-co-glycolic acid (PLGA)-based cationic pathogen-like particles (PLPs) loaded with TLR agonists mimic biophysical properties of microbes and hence, simulate pathogen-pattern recognition receptor interactions to safely and effectively stimulate innate immune responses. We generated micro particle PLPs loaded with TLR4 (glucopyranosyl lipid adjuvant, GLA) or TLR9 (CpG) agonists, and formulated them with and without a mucosal delivery enhancing carbomer-based nanoemulsion adjuvant (ADJ). These adjuvants delivered intranasally to mice elicited high numbers of influenza nucleoprotein (NP)-specific CD8+ and CD4+ effector and tissue-resident memory T cells (TRMs) in lungs and airways. PLPs delivering TLR4 versus TLR9 agonists drove phenotypically and functionally distinct populations of effector and memory T cells. While PLPs loaded with CpG or GLA provided immunity, combining the adjuvanticity of PLP-GLA and ADJ markedly enhanced the development of airway and lung TRMs and CD4 and CD8 T cell-dependent immunity to influenza virus. Further, balanced CD8 (Tc1/Tc17) and CD4 (Th1/Th17) recall responses were linked to effective influenza virus control. These studies provide mechanistic insights into vaccine-induced pulmonary T cell immunity and pave the way for the development of a universal influenza and SARS-CoV-2 vaccines.
- Published
- 2021
22. Development of Systemic Immune Dysregulation in a Rat Trauma Model with Biomaterial-Associated Infection
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Levi B. Wood, Pallab Pradhan, Nick J. Willett, Casey E. Vantucci, Mara L. Schenker, Hyunhee Ahn, Krishnendu Roy, and Robert E. Guldberg
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medicine.medical_specialty ,business.industry ,medicine.drug_class ,Macrophage infiltration ,medicine.medical_treatment ,Antibiotics ,Immunosuppression ,Infection group ,Immune dysregulation ,medicine.disease_cause ,Local infection ,Immune system ,Orthopedic surgery ,Immunology ,Medicine ,business - Abstract
Orthopedic biomaterial-associated infections remain a large clinical challenge, particularly with open fractures and segmental bone loss. Invasion and colonization of bacteria within immune-privileged canalicular networks of the bone can lead to local, indolent infections that can persist for years without symptoms before eventual catastrophic hardware failure. Host immunity is essential for bacterial clearance and an appropriate healing response, and recent evidence has suggested an association between orthopedic trauma and systemic immune dysregulation and immunosuppression. However, the impact of a local infection on this systemic immune response and subsequent effects on the local response is poorly understood and has not been a major focus for addressing orthopedic injuries and infections. Therefore, this study utilized a model of orthopedic biomaterial-associated infection to investigate the effects of infection on the long-term immune response. Here, despite persistence of a local, indolent infection lacking outward symptoms, there was still evidence of long-term immune dysregulation with systemic increases in MDSCs and decreases in T cells compared to non-infected trauma. Further, the trauma only group exhibited a regulated and coordinated systemic cytokine response, which was not present in the infected trauma group. Locally, the infection group had attenuated macrophage infiltration in the local soft tissue compared to the non-infected group. Our results demonstrate widespread impacts of a localized orthopedic infection on the systemic and local immune responses. Characterization of the immune response to orthopedic biomaterial-associated infection may identify key targets for immunotherapies that could optimize both regenerative and antibiotic interventions, ultimately improving outcomes for these patients.
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- 2020
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23. A Multi-Niche Microvascularized Human Bone-Marrow-on-a-Chip
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Michael R. Nelson, Joscelyn C. Mejías, Krishnendu Roy, Frey Rubio D, Delta Ghoshal, and Keith E
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0303 health sciences ,Niche ,Cancer metastasis ,Human bone ,Biology ,Perivascular niche ,3. Good health ,Cell biology ,03 medical and health sciences ,Haematopoiesis ,0302 clinical medicine ,Hematopoietic progenitor ,Vascular network ,030220 oncology & carcinogenesis ,Immune homeostasis ,030304 developmental biology - Abstract
The human bone marrow (hBM) is a complex organ critical for hematopoietic and immune homeostasis, and where many cancers metastasize. Yet, understanding the fundamental biology of the hBM in health and diseases remain difficult due to complexity of studying or manipulating the BM in humans. Accurate in vitro models of the hBM microenvironment are critical to further our understanding of the BM niche and advancing new clinical interventions. Although, in vitro culture models that recapitulate some key components of the BM niche have been reported, there are no examples of a fully human, in vitro, organoid platform that incorporates the various niches of the hBM - specifically the endosteal, central marrow, and perivascular niches – thus limiting their physiological relevance. Here we report an hBM-on-a-chip that incorporates these three niches in a single micro-physiological device. Osteogenic differentiation of hMSCs produced robust mineralization on the PDMS surface (“bone layer”) and subsequent seeding of endothelial cells and hMSCs in a hydrogel network (“central marrow”) created an interconnected vascular network (“perivascular niche”) on top. We show that this multi-niche hBM accurately mimics the ECM composition, allows hematopoietic progenitor cell proliferation and migration, and is affected by radiation. A key finding is that the endosteal niche significantly contributes to hBM physiology. Taken together, this multi-niche micro-physiological system opens up new opportunities in hBM research and therapeutics development, and can be used to better understand hBM physiology, normal and impaired hematopoiesis, and hBM pathologies, including cancer metastasis, multiple myelomas, and BM failures.
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- 2019
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24. Neutrophil-targeted, protease-activated pulmonary drug delivery blocks airway and systemic inflammation
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Rabindra Tirouvanziam, Liliana Viera, Xin Xu, Osric A. Forrest, Joscelyn C. Mejías, Jindong Li, Camilla Margaroli, David A Frey Rubio, Krishnendu Roy, and Amit Gaggar
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0301 basic medicine ,Neutrophils ,Inflammation ,Systemic inflammation ,Neutrophil Activation ,Proinflammatory cytokine ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Drug Delivery Systems ,Extracellular ,Medicine ,Animals ,Lung ,Microgels ,Pancreatic Elastase ,business.industry ,Macrophages ,Elastase ,Degranulation ,General Medicine ,Pneumonia ,Mice, Inbred C57BL ,Disease Models, Animal ,030104 developmental biology ,Neutrophil Infiltration ,030220 oncology & carcinogenesis ,Immunology ,Drug delivery ,Neutrophil degranulation ,Cytokines ,Nanoparticles ,Female ,medicine.symptom ,business ,Bronchoalveolar Lavage Fluid ,Research Article - Abstract
Pulmonary drug delivery presents a unique opportunity to target lower airway inflammation, which is often characterized by the massive recruitment of neutrophils from blood. However, specific therapies are lacking modulation of airway neutrophil function, and difficult challenges must be overcome to achieve therapeutic efficacy against pulmonary inflammation, notably drug hydrophobicity, mucociliary and macrophage-dependent clearance, and high extracellular protease burden. Here, we present a multistage, aerodynamically favorable delivery platform that uses extracellular proteolysis to its advantage to deliver nanoparticle-embedded hydrophobic drugs to neutrophils within the lower airways. Our design consists of a self-regulated nanoparticle-in-microgel system, in which microgel activation is triggered by extracellular elastase (degranulated by inflammatory neutrophils), and nanoparticles are loaded with Nexinhib20, a potent neutrophil degranulation inhibitor. Successful in vivo delivery of Nexinhib20 to the airways and into neutrophils promoted resolution of the inflammatory response by dampening neutrophil recruitment and degranulation, proinflammatory cytokine production in both airway and systemic compartments, as well as the presence of neutrophil-derived pathological extracellular vesicles in the lung fluid. Our findings showcase a new platform that overcomes challenges in pulmonary drug delivery and allows customization to match the proteolytic footprint of given diseases.
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- 2019
25. NADPH oxidase 5 (NOX5)—induced reactive oxygen signaling modulates normoxic HIF‐1α and p27Kip1 expression in malignant melanoma and other human tumors
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Han Liu, Guojian Jiang, Yongzhong Wu, Jiuping Ji, James H. Doroshow, Yiping Zhang, Mariam M. Konaté, Smitha Antony, Iris Dahan, Agnes Juhasz, Hala R. Makhlouf, Donna Butcher, Diana C. Haines, Dave S.B. Hoon, Krishnendu Roy, Jiamo Lu, and Jennifer L. Meitzler
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0301 basic medicine ,Male ,Cancer Research ,Blotting, Western ,tumor microarray (TMA) ,Endogeny ,Breast Neoplasms ,Biology ,reactive oxygen species (ROS) ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,cell growth ,Humans ,Phosphorylation ,Molecular Biology ,GSK3B ,Protein kinase B ,Melanoma ,Cell Proliferation ,Ovarian Neoplasms ,Gene knockdown ,NADPH oxidase ,Glycogen Synthase Kinase 3 beta ,Cell growth ,Prostatic Neoplasms ,Articles ,Hypoxia-Inducible Factor 1, alpha Subunit ,Cell biology ,030104 developmental biology ,NADPH Oxidase 5 ,Cell culture ,030220 oncology & carcinogenesis ,biology.protein ,DNA damage ,Female ,RNA Interference ,Signal transduction ,Akt/GSK3 signaling ,Reactive Oxygen Species ,Proto-Oncogene Proteins c-akt ,Cyclin-Dependent Kinase Inhibitor p27 ,Research Article ,Signal Transduction - Abstract
NADPH oxidase 5 (NOX5) generated reactive oxygen species (ROS) have been implicated in signaling cascades that regulate cancer cell proliferation. To evaluate and validate NOX5 expression in human tumors, we screened a broad range of tissue microarrays (TMAs), and report substantial overexpression of NOX5 in malignant melanoma and cancers of the prostate, breast, and ovary. In human UACC-257 melanoma cells that possesses high levels of functional endogenous NOX5, overexpression of NOX5 resulted in enhanced cell growth, increased numbers of BrdU positive cells, and increased γ-H2AX levels. Additionally, NOX5-overexpressing (stable and inducible) UACC-257 cells demonstrated increased normoxic HIF-1α expression and decreased p27Kip1 expression. Similarly, increased normoxic HIF-1α expression and decreased p27Kip1 expression were observed in stable NOX5-overexpressing clones of KARPAS 299 human lymphoma cells and in the human prostate cancer cell line, PC-3. Conversely, knockdown of endogenous NOX5 in UACC-257 cells resulted in decreased cell growth, decreased HIF-1α expression, and increased p27Kip1 expression. Likewise, in an additional human melanoma cell line, WM852, and in PC-3 cells, transient knockdown of endogenous NOX5 resulted in increased p27Kip1 and decreased HIF-1α expression. Knockdown of endogenous NOX5 in UACC-257 cells resulted in decreased Akt and GSK3β phosphorylation, signaling pathways known to modulate p27Kip1 levels. In summary, our findings suggest that NOX5 expression in human UACC-257 melanoma cells could contribute to cell proliferation due, in part, to the generation of high local concentrations of extracellular ROS that modulate multiple pathways that regulate HIF-1 and networks that signal through Akt/GSK3β/p27Kip1. This article is protected by copyright. All rights reserved
- Published
- 2017
26. Unravelling Rashba-Dresselhaus Splitting Assisted Magneto-Photoelectrochemical Water Splitting in Asymmetric MoSSe-GaN Heterostructures.
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Ghosh, Dibyendu, Krishnendu Roy, Maitra, Soumyajit, and Kumar, Praveen
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- 2022
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27. In-vitro and in-vivo Characterization of a Multi-Stage Enzyme-Responsive Nanoparticle-in-Microgel Pulmonary Drug Delivery System
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Joscelyn C. Mejías and Krishnendu Roy
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Proteases ,Polymers ,Pharmaceutical Science ,02 engineering and technology ,Endocytosis ,Cystic fibrosis ,Mice ,03 medical and health sciences ,Drug Delivery Systems ,In vivo ,Macrophages, Alveolar ,medicine ,Animals ,Distribution (pharmacology) ,Trypsin ,Particle Size ,Fibroblast ,Lung ,030304 developmental biology ,Drug Carriers ,Mice, Inbred BALB C ,0303 health sciences ,COPD ,Microgels ,Chemistry ,021001 nanoscience & nanotechnology ,medicine.disease ,Controlled release ,In vitro ,3. Good health ,Cell biology ,Mice, Inbred C57BL ,RAW 264.7 Cells ,medicine.anatomical_structure ,Drug delivery ,Biophysics ,Nanoparticles ,Emulsions ,Female ,Leukocyte Elastase ,0210 nano-technology - Abstract
Although the lung is an obvious target for site-specific delivery of many therapeutics for respiratory airway diseases such as asthma, COPD, and cystic fibrosis, novel strategies are needed to avoid key physiologic barriers for efficient delivery and controlled release of therapeutics to the lungs. Specifically, deposition into the deep lung requires particles with a 1-5 µm aerodynamic diameter; however, particles with a geometric diameter less than 6 µm are rapidly cleared by alveolar macrophages. Additionally, epithelial, endothelial, and fibroblast cells prefer smaller (< 300 nm) nanoparticles for efficient endocytosis. Here we address these contradictory design requirements by using a nanoparticle-inside-microgel system (Nano-in-Microgel). Using an improved maleimide-thiol based Michael Addition during (water-in-oil) Emulsion (MADE) method, we fabricated both trypsin-responsive and neutrophil elastase-responsive polymeric Nano-in-Microgel to show the versatility of the system in easily exchanging enzyme-responsive crosslinkers for disease-specific proteases. By varying the initial macromer concentration, from 20-50 % w/v, the size distribution means ranged from 4-8 µm, enzymatic degradation of the microgels is within 30 minutes, and in vitro macrophage phagocytosis is lower for the higher % w/v. We further demonstrated that in vivo lung delivery of the multi-stage carriers through the pulmonary route yields particle retention up to several hours and followed by clearance within in naïve mice. Our results provide a further understanding of how enzymatically-degradable multi-stage polymeric carriers can be used for pulmonary drug delivery.Graphical Abstract
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- 2019
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28. A polyvalent inactivated rhinovirus vaccine is broadly immunogenic in rhesus macaques
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Adriana E. Kajon, James E. Gern, Sujin Lee, Xiaoyan Lu, Martin L. Moore, Elizabeth Strobert, Yury A. Bochkov, Paul Spearman, Krishnendu Roy, Joe B. Jenkins, Ranjna Madan-Lala, Dean D. Erdman, Minh Trang Nguyen, and Michael G. Currier
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0301 basic medicine ,medicine.medical_treatment ,Science ,General Physics and Astronomy ,medicine.disease_cause ,complex mixtures ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Article ,03 medical and health sciences ,Antigen ,stomatognathic system ,medicine ,otorhinolaryngologic diseases ,Potency ,Multidisciplinary ,biology ,business.industry ,virus diseases ,Common cold ,General Chemistry ,medicine.disease ,Virology ,3. Good health ,030104 developmental biology ,Infectious disease (medical specialty) ,Immunology ,biology.protein ,Antibody ,Rhinovirus ,business ,Adjuvant ,circulatory and respiratory physiology - Abstract
As the predominant aetiological agent of the common cold, human rhinovirus (HRV) is the leading cause of human infectious disease. Early studies showed that a monovalent formalin-inactivated HRV vaccine can be protective, and virus-neutralizing antibodies (nAb) correlated with protection. However, co-circulation of many HRV types discouraged further vaccine efforts. Here, we test the hypothesis that increasing virus input titres in polyvalent inactivated HRV vaccine may result in broad nAb responses. We show that serum nAb against many rhinovirus types can be induced by polyvalent, inactivated HRVs plus alhydrogel (alum) adjuvant. Using formulations up to 25-valent in mice and 50-valent in rhesus macaques, HRV vaccine immunogenicity was related to sufficient quantity of input antigens, and valency was not a major factor for potency or breadth of the response. Thus, we have generated a vaccine capable of inducing nAb responses to numerous and diverse HRV types., Existence of 150–170 serologically distinct human rhinoviruses (HRV) has hampered vaccine development for this human pathogen. Here, the authors show that a prime-boost regimen with an inactivated 50-valent HRV vaccine induces neutralizing antibody responses to diverse HRV serotypes in rhesus macaques.
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- 2016
29. Enteric Parasitic Infection Among Antiretroviral Therapy Naïve HIV-Seropositive People: Infection Begets Infection-Experience from Eastern India
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Anindya Mukherjee, Krishnendu Roy, Arunansu Talukdar, Suman Mitra, D. Khanra, and Ananya Bhowmik
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0301 basic medicine ,medicine.medical_specialty ,Tuberculosis ,030106 microbiology ,Context (language use) ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,Internal medicine ,Medicine ,lcsh:RC109-216 ,Stage (cooking) ,biology ,business.industry ,HIV ,Cryptosporidium ,Odds ratio ,Case-control ,medicine.disease ,biology.organism_classification ,Antiretroviral therapy ,Confidence interval ,Infectious Diseases ,Immunology ,Chemoprophylaxis ,Original Article ,parasitic opportunistic infections ,business ,Case–control - Abstract
Context: Parasitic opportunistic infections (POIs) frequently occur in HIV/AIDS patients and affect the quality of life. Aims: This study assessing the standard organisms in the stool of HIV-positive patients, their comparison with HIV-negative controls, their relation with various factors, is the first of its kind in the eastern part of India. Settings and Design: hospital-based case-control study. Materials and Methods: A total of 194 antiretroviral therapy naïve HIV-positive patients (18-60 years) were taken as cases and 98 age- and sex-matched HIV-negative family members as controls. Demographical, clinical, biochemical, and microbiological parameters were studied. Statistical Analysis Used: Odds ratio, 95% confidence interval, and P (< 0.05 is to be significant) were calculated using Epi Info 7 software. Results: POI was significantly higher among HIV-seropositive cases (61.86%) (P < 0.001). Cryptosporidium was the most common POI in HIV-seropositive patients overall and without diarrhea; Entameba was the most common POI in patients with acute diarrhea, and Isospora was the most common POI in the patients having chronic diarrhea. Entameba was the most common POI in CD4 count 350 cells/μl Cryptosporidium was the most common POI. Mean CD4 count was significantly (P < 0.001) lower among people having multiple infections. Male sex, hemoglobin
- Published
- 2016
30. A simple, clinically relevant therapeutic vaccine shows long-term protection in an aggressive, delayed-treatment B lymphoma model
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Krishnendu Roy, Jiaying Liu, Jardin Leleux, and Pallab Pradhan
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0301 basic medicine ,Lymphoma, B-Cell ,medicine.medical_treatment ,T-Lymphocytes ,Antineoplastic Agents ,Galactosylceramides ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Immune system ,Cancer immunotherapy ,Immunity ,hemic and lymphatic diseases ,Cell Line, Tumor ,Medicine ,Animals ,Humans ,B-cell lymphoma ,Mice, Inbred BALB C ,Vaccines ,business.industry ,Lymphoma, Non-Hodgkin ,Germinal center ,General Medicine ,Immunotherapy ,Th1 Cells ,medicine.disease ,Lymphoma ,Immunity, Humoral ,Survival Rate ,030104 developmental biology ,030220 oncology & carcinogenesis ,Immunology ,Natural Killer T-Cells ,Lymph Nodes ,business ,Diffuse large B-cell lymphoma ,Biomarkers ,Research Article - Abstract
Despite initial remission after successful treatments, B lymphoma patients often encounter relapses and resistance causing high mortality. Thus, there is a need to develop therapies that prevent relapse by providing long-term protection and, ultimately, lead to functional cure. In this study, our goal was to develop a simple, clinically relevant, and easily translatable therapeutic vaccine that provides durable immune protection against aggressive B cell lymphoma and identify critical immune biomarkers that are predictive of long-term survival. In a delayed-treatment, aggressive, murine model of A20 B lymphoma that mimics human diffuse large B cell lymphoma, we show that therapeutic A20 lysate vaccine adjuvanted with an NKT cell agonist, α-galactosylceramide (α-GalCer), provides long-term immune protection against lethal tumor challenges and the antitumor immunity is primarily CD8 T cell dependent. Using experimental and computational methods, we demonstrate that the initial strength of germinal center reaction and the magnitude of class-switching into a Th1 type humoral response are the best predictors for the long-term immunity of B lymphoma lysate vaccine. Our results not only provide fundamentally insights for successful immunotherapy and long-term protection against B lymphomas, but also present a simple, therapeutic vaccine that can be translated easily due to the facile and inexpensive method of preparation.
- Published
- 2017
31. Combinatorial Delivery of Dual and Triple TLR Agonists via Polymeric Pathogen-like Particles Synergistically Enhances Innate and Adaptive Immune Responses
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Krishnendu Roy, Ranjna Madan-Lala, and Pallab Pradhan
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0301 basic medicine ,Ovalbumin ,Polymers ,medicine.medical_treatment ,Science ,Adaptive Immunity ,Ligands ,Immunoglobulin G ,Article ,03 medical and health sciences ,Mice ,Immune system ,Th2 Cells ,Antigen ,Adjuvants, Immunologic ,Medicine ,Animals ,Vaccines ,Multidisciplinary ,biology ,business.industry ,Toll-Like Receptors ,Germinal center ,TLR9 ,Dendritic cell ,Dendritic Cells ,Th1 Cells ,Acquired immune system ,Immunity, Innate ,3. Good health ,030104 developmental biology ,Immunology ,biology.protein ,business ,Adjuvant - Abstract
Despite decades of research very few vaccine-adjuvants have received FDA approval. Two fundamental challenges plague clinical translation of vaccine-adjuvants: reducing acute toxicities that result from systemic diffusion of many soluble adjuvants, and delivering multiple adjuvants at the same time to mimic the synergistic immune-stimulation of pathogens, while being safe. In order to address these barriers, we evaluated combinations of four clinically relevant immune-agonists, specifically Toll-like receptor (TLR) ligands, using biodegradable, polymer microparticles. We tested them alone and in combinations of 2 or 3, for a total of 10 unique conditions. We evaluated primary bone-marrow-derived Dendritic Cell phenotypes and functionality, and identified several synergistic combinations. We picked a dual and a triple adjuvant combination, TLR4/TLR9 and TLR4/TLR7/TLR9, for further evaluation and found that both combinations promoted antigen cross-presentation in vitro. Studies in mice using the model antigen Ovalbumin, showed that both combinations enhanced lymph node germinal center and T follicular helper cell responses. The triple adjuvant combination showed increased antigen-specific antibody titer with an overall balanced Th1/Th2 response, while the dual combination promoted Th1-polarized IgG responses. Our results show how polymeric particulate-carriers can be adopted to safely deliver combinatorial adjuvants and selectively synergize specific types of immune responses for vaccine applications.
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- 2017
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32. Decoding NADPH Oxidase 4 Expression in Human Tumors
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Iris Dahan, Smitha Antony, Agnes Juhasz, Hala R. Makhlouf, Jennifer L. Meitzler, Jiamo Lu, Donna Butcher, Pidder Jansen-Dürr, Guojian Jiang, Ajay M. Shah, James H. Doroshow, Krishnendu Roy, Yongzhong Wu, and Haymo Pircher
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Male ,0301 basic medicine ,IHC, Immunohistochemistry ,Esophageal Neoplasms ,H&E, Haemotoxylin and Eosin ,Clinical Biochemistry ,DUOX, Dual oxidase ,Biochemistry ,Tissue microarray ,DPI, Diphenylene iodonium ,EMT, Epithelial-mesenchymal transition ,lcsh:QH301-705.5 ,Melanoma ,Ovarian Neoplasms ,lcsh:R5-920 ,NADPH oxidase ,medicine.diagnostic_test ,biology ,qPCR, quantitative real-time PCR ,NOX4 ,NOX, NADPH oxidase ,Gene Expression Regulation, Neoplastic ,ovarian cancer ,Head and Neck Neoplasms ,NADPH Oxidase 4 ,cardiovascular system ,Immunohistochemistry ,Female ,lcsh:Medicine (General) ,Research Paper ,Monoclonal antibody ,Immunofluorescence ,PI, propidium iodide ,03 medical and health sciences ,ER, Endoplasmic reticulum ,ORF, open reading frame ,Ovarian cancer ,Cell Line, Tumor ,TMA, tissue microarray ,medicine ,Extracellular ,melanoma ,Humans ,tissue microarray ,TGF-β1, transforming growth factor β1 ,Carcinoma ,Organic Chemistry ,HEK 293 cells ,Prostatic Neoplasms ,medicine.disease ,Molecular biology ,Oxidative Stress ,HEK293 Cells ,030104 developmental biology ,lcsh:Biology (General) ,Urinary Bladder Neoplasms ,monoclonal antibody ,biology.protein ,CCLE, Cancer cell line encyclopedia - Abstract
NADPH oxidase 4 (NOX4) is a redox active, membrane-associated protein that contributes to genomic instability, redox signaling, and radiation sensitivity in human cancers based on its capacity to generate H2O2 constitutively. Most studies of NOX4 in malignancy have focused on the evaluation of a small number of tumor cell lines and not on human tumor specimens themselves; furthermore, these studies have often employed immunological tools that have not been well characterized. To determine the prevalence of NOX4 expression across a broad range of solid tumors, we developed a novel monoclonal antibody that recognizes a specific extracellular region of the human NOX4 protein, and that does not cross-react with any of the other six members of the NOX gene family. Evaluation of 20 sets of epithelial tumors revealed, for the first time, high levels of NOX4 expression in carcinomas of the head and neck (15/19 patients), esophagus (12/18 patients), bladder (10/19 patients), ovary (6/17 patients), and prostate (7/19 patients), as well as malignant melanoma (7/15 patients) when these tumors were compared to histologically-uninvolved specimens from the same organs. Detection of NOX4 protein upregulation by low levels of TGF-β1 demonstrated the sensitivity of this new probe; and immunofluorescence experiments found that high levels of endogenous NOX4 expression in ovarian cancer cells were only demonstrable associated with perinuclear membranes. These studies suggest that NOX4 expression is upregulated, compared to normal tissues, in a well-defined, and specific group of human carcinomas, and that its expression is localized on intracellular membranes in a fashion that could modulate oxidative DNA damage., Graphical abstract fx1, Highlights • NADPH oxidase 4 (NOX4) detection has been achieved with a monoclonal antibody (47-6) developed to the extracellular E-loop region (amino acids 209–282). • Tissue microarray analysis of 20 human malignancies reveals differential NOX4 expression by IHC was higher in bladder, esophageal, head and neck, ovary, and prostate cancers and melanoma than in normal tissues. • NOX4 expression in the ovarian cancer cell line COV362 is localized in the perinuclear region.
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- 2017
33. Evaluation of Hemophilic Arthropathy using Ultrasonography and its comparison to MRI
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Shounak Ghosh, Sumantro Mondal, Debanjali Sinha, Alakendu Ghosh, Krishnendu Roy, and Maitreyee Bhattyacharyya
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- 2017
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34. App Inventor 2 Essentials : A Step-by-step Introductory Guide to Mobile App Development with App Inventor 2
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Felicia Kamriani, Krishnendu Roy, Felicia Kamriani, and Krishnendu Roy
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- Mobile computing, Application software--Development
- Abstract
A step-by-step introductory guide to mobile app development with App Inventor 2Key Features[•]Get an introduction to the functionalities of App Inventor 2 and use it to unleash your creativity[•]Learn to navigate the App Inventor platform, develop basic coding skills and become familiar with a blocks based programming language[•]Build your very first mobile app and feel proud of your accomplishment[•]Follow tutorials to expand your app development skillsBook DescriptionApp Inventor 2 will take you on a journey of mobile app development. We begin by introducing you to the functionalities of App Inventor and giving you an idea about the types of apps you can develop using it. We walk you through the technical set up so you can take advantage of the interactive development environment (live testing). You will get hands-on, practical experience building three different apps using tutorials. Along the way, you will learn computer science principles as well as tips to help you prepare for the creative process of building an app from scratch. By the end of the journey, you will learn how to package an app and deploy it to app markets. App Inventor 2 Essentials prepares you to amass a resource of skills, knowledge and experience to become a mobile app developerWhat you will learn[•]Perform technical setup and navigate the App Inventor platform[•]Utilize the interactive development environment by pairing a mobile device with a computer using Wi-Fi or USB[•]Build three apps: a game, an event app and a raffle app[•] Create the user interface of the app in the Designer and program the code in the Blocks Editor[•] Integrate basic computer science principles along with more complex elements such fusion tables and lists[•] Test and troubleshoot your applications[•] Publish your apps on Google Play Store to reach a wide audience[•]Unleash your creativity for further app developmentWho this book is forApp Inventor 2 Essentials is for anyone who wants to learn to make mobile apps for Android devices – no prior coding experience is necessary.
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- 2016
35. Biophysical Attributes of CpG Presentation Control TLR9 Signaling to Differentially Polarize Systemic Immune-Responses
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Krishnendu Roy, Jardin Leleux, and Pallab Pradhan
- Subjects
Innate immune system ,medicine.anatomical_structure ,Immune system ,CpG site ,Immunity ,T cell ,medicine ,TLR9 ,Phosphorylation ,Biology ,Receptor ,Cell biology - Abstract
It is currently unknown whether and how mammalian pathogen-recognition receptors (PRR) respond to biophysical patterns of pathogen-associated molecular danger-signals. Using synthetic pathogen-like particles (PLPs) that mimic physical properties of bacteria or large-viruses, we have discovered that the quality and quantity of Toll-like-receptor-9 (TLR9)-signaling by CpG in mouse dendritic cells (mDC) is uniquely dependent on biophysical attributes, specifically the surface-density of CpG and size of the presenting PLP. These physical patterns control DC-programming by regulating kinetics and magnitude of MyD88-IRAK4 signaling, NFκB-driven responses, and STAT3 phosphorylation, which in turn controls differential T cell responses and in vivo immune-polarization, especially T-helper 1 (Th1) versus T-helper 2 (Th2) antibody responses. Our findings suggest that innate immune cells can sense and respond not only to molecular, but also pathogen-associated physical patterns (PAPPs), broadening the tools for modulating immunity, helping to better understand innate response mechanisms to pathogens and develop new and improved vaccines.
- Published
- 2016
- Full Text
- View/download PDF
36. Engineering approaches for regeneration of T lymphopoiesis
- Author
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Kyung-Ho Roh and Krishnendu Roy
- Subjects
0301 basic medicine ,Biomedical Engineering ,Notch signaling pathway ,T cells ,Medicine (miscellaneous) ,Review ,Stem cells ,Immunological memory ,Biology ,Negative selection ,Biomaterials ,03 medical and health sciences ,Bacterial microcompartment ,Lymphopoiesis ,Notch signaling ,Thymic epithelial cells ,Regeneration (biology) ,T-cell receptor ,Acquired immune system ,Thymus ,Positive selection ,OP9-DL1 ,030104 developmental biology ,Immunology ,Ceramics and Composites ,Stem cell ,T cell receptor ,Neuroscience - Abstract
T cells play a central role in immune-homeostasis; specifically in the induction of antigen-specific adaptive immunity against pathogens and mutated self with immunological memory. The thymus is the unique organ where T cells are generated. In this review, first the complex structures and functions of various thymic microcompartments are briefly discussed to identify critical engineering targets for regeneration of thymic functions in vitro and in vivo. Then the biomimetic regenerative engineering approaches are reviewed in three categories: 1) reconstruction of 3-D thymic architecture, 2) cellular engineering, and 3) biomaterials-based artificial presentation of critical biomolecules. For each engineering approach, remaining challenges and clinical opportunities are also identified and discussed.
- Published
- 2016
37. 50-valent inactivated rhinovirus vaccine is broadly immunogenic in rhesus macaques
- Author
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Michael G. Currier, Paul Spearman, Minh Trang Nguyen, Adriana E. Kajon, Martin L. Moore, James E. Gern, Krishnendu Roy, Sujin Lee, Xiaoyan Lu, Joe B. Jenkins, Ranjna Madan-Lala, Dean D. Erdman, Yury A. Bochkov, and Elizabeth Strobert
- Subjects
medicine.medical_treatment ,medicine.disease_cause ,Virus ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,stomatognathic system ,medicine ,otorhinolaryngologic diseases ,030212 general & internal medicine ,030304 developmental biology ,0303 health sciences ,biology ,business.industry ,virus diseases ,Common cold ,medicine.disease ,Virology ,3. Good health ,Titer ,Infectious disease (medical specialty) ,biology.protein ,Rhinovirus ,Antibody ,business ,Adjuvant - Abstract
As the predominant etiological agent of the common cold, human rhinovirus (HRV) is the leading cause of human infectious disease. Early studies showed monovalent formalin-inactivated HRV vaccine can be protective, and virus-neutralizing antibodies (nAb) correlated with protection. However, co-circulation of many HRV types discouraged further vaccine efforts. We approached this problem straightforwardly. We tested the hypothesis that increasing virus input titers in polyvalent inactivated HRV vaccine will result in broad nAb responses. Here, we show that serum nAb against many rhinovirus types can be induced by polyvalent, inactivated HRVs plus alhydrogel (alum) adjuvant. Using formulations up to 25-valent in mice and 50-valent in rhesus macaques, HRV vaccine immunogenicity was related to sufficient quantity of input antigens, and valency was not a major factor for potency or breadth of the response. We for the first time generated a vaccine capable of inducing nAb responses to numerous and diverse HRV types.
- Published
- 2016
- Full Text
- View/download PDF
38. Effect of Shape, Size, and Aspect Ratio on Nanoparticle Penetration and Distribution inside Solid Tissues Using 3D Spheroid Models
- Author
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Patrick Jurney, Rachit Agarwal, Sidlgata V. Sreenivasan, Li Shi, Vikramjit Singh, Mansi Raythatha, and Krishnendu Roy
- Subjects
Models, Molecular ,Materials science ,Nanotubes ,Biomedical Engineering ,Spheroid ,Pharmaceutical Science ,Nanoparticle ,Nanotechnology ,Penetration (firestop) ,Article ,Polyethylene Glycols ,Biomaterials ,Molecular Imprinting ,HEK293 Cells ,Neoplasms ,Spheroids, Cellular ,Humans ,Nanoparticles ,Nanorod ,Nanocarriers ,Nanoscopic scale ,Biomedical engineering - Abstract
Efficient penetration and uniform distribution of nanoparticles (NPs) inside solid tissues and tumors is paramount to their therapeutic and diagnostic success. While many studies have reported the effect of NP size and charge on intratissue distribution, role of shape, and aspect ratio on NP transport inside solid tissues remain unclear. Here experimental and theoretical studies are reported on how nanoscale geometry of Jet and Flash Imprint Lithography-fabricated, polyethylene-glycol-based anionic nanohydrogels affect their penetration and distribution inside 3D spheroids, a model representing the intervascular region of solid, tumor-like tissues. Unexpectedly, low aspect ratio cylindrical NPs (H/D ≈0.3; disk-like particles, 100 nm height, and 325 nm diameter) show maximal intratissue delivery (>50% increase in total cargo delivered) and more uniform penetration compared to nanorods or smaller NPs of the same shape. This is in contrast to spherical NPs where smaller NP size resulted in deeper, more uniform penetration. Our results provide fundamental new knowledge on NP transport inside solid tissues and further establish shape and aspect ratio as important design parameters in developing more efficient, better penetrating, nanocarriers for drug, or contrast-agent delivery.
- Published
- 2015
39. NADPH Oxidases: A Perspective on Reactive Oxygen Species Production in Tumor Biology
- Author
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Agnes Juhasz, Smitha Antony, Jiamo Lu, Jennifer L. Meitzler, Han Liu, Yongzhong Wu, Guojian Jiang, James H. Doroshow, and Krishnendu Roy
- Subjects
inorganic chemicals ,Physiology ,Clinical Biochemistry ,Context (language use) ,Apoptosis ,medicine.disease_cause ,Biochemistry ,Superoxides ,Neoplasms ,medicine ,Humans ,Molecular Biology ,NOx ,General Environmental Science ,Cell Proliferation ,chemistry.chemical_classification ,Reactive oxygen species ,NADPH oxidase ,biology ,Cell growth ,Cell Cycle ,NADPH Oxidases ,Cell Biology ,Hydrogen Peroxide ,Cell cycle ,Forum Review Articles ,Cell biology ,chemistry ,biology.protein ,cardiovascular system ,General Earth and Planetary Sciences ,Signal transduction ,Carcinogenesis ,Reactive Oxygen Species ,Oxidation-Reduction ,Signal Transduction - Abstract
Significance: Reactive oxygen species (ROS) promote genomic instability, altered signal transduction, and an environment that can sustain tumor formation and growth. The NOX family of NADPH oxidases, membrane-bound epithelial superoxide and hydrogen peroxide producers, plays a critical role in the maintenance of immune function, cell growth, and apoptosis. The impact of NOX enzymes in carcinogenesis is currently being defined and may directly link chronic inflammation and NOX ROS-mediated tumor formation. Recent Advances: Increased interest in the function of NOX enzymes in tumor biology has spurred a surge of investigative effort to understand the variability of NOX expression levels in tumors and the effect of NOX activity on tumor cell proliferation. These initial efforts have demonstrated a wide variance in NOX distribution and expression levels across numerous cancers as well as in common tumor cell lines, suggesting that much remains to be discovered about the unique role of NOX-related ROS production within each system. Progression from in vitro cell line studies toward in vivo tumor tissue screening and xenograft models has begun to provide evidence supporting the importance of NOX expression in carcinogenesis. Critical Issues: A lack of universally available, isoform-specific antibodies and animal tumor models of inducible knockout or over-expression of NOX isoforms has hindered progress toward the completion of in vivo studies. Future Directions: In vivo validation experiments and the use of large, existing gene expression data sets should help define the best model systems for studying the NOX homologues in the context of cancer. Antioxid. Redox Signal. 20, 2873–2889.
- Published
- 2014
40. Controlled Major Histocompatibility Complex-T Cell Receptor Signaling Allows Efficient Generation of Functional, Antigen-Specific CD8+ T Cells from Embryonic Stem Cells and Thymic Progenitors
- Author
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Phillip W. Tucker, Krishnendu Roy, Jian Lin, and Hui Nie
- Subjects
T cell ,Antigen presentation ,Biomedical Engineering ,CD1 ,Bioengineering ,Thymus Gland ,Biology ,CD8-Positive T-Lymphocytes ,Biochemistry ,Biomaterials ,Major Histocompatibility Complex ,Mice ,medicine ,Cytotoxic T cell ,Animals ,IL-2 receptor ,Antigen-presenting cell ,Embryonic Stem Cells ,Interleukin 3 ,Reverse Transcriptase Polymerase Chain Reaction ,Cell Differentiation ,Original Articles ,Natural killer T cell ,Flow Cytometry ,Cell biology ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Female - Abstract
Generation of early T cells by coculturing stem cells on notch-ligand-expressing OP9 stromal cells (OP9-DL1) has been widely reported. However, further differentiation of these cells into mature, antigen-specific, functional T cells, without retroviral transduction of T cell receptors (TcRs), is yet to be achieved. In the thymic niche this differentiation is controlled by the interaction of developing TcRs with major histocompatibility (MHC) molecules on stromal cells. We hypothesized that by providing exogenous antigen-specific MHC/TcR signals, stem and progenitor cells could be engineered into functional, effector T cells specific for the same antigen. Here we demonstrate that both thymus-derived immature T cells (double positive [DP]: CD4+CD8+) and mouse embryonic stem cells can be efficiently differentiated into antigen-specific CD8+ T cells using either MHC tetramers or peptide-loaded stromal cells. DP cells, following MHC/TcR signaling, retained elevated recombination activating gene-1 levels, suggesting continuing TcR gene rearrangement. Both DP and embryonic stem-cell-derived CD8+ T cells showed significant cytotoxic T lymphocytes activity against antigen-loaded target cells, indicating that these cells are functional. Such directed differentiation strategy could provide an efficient method for generating functional, antigen-specific T cells from stem cells for potential use in adoptive T cell therapy.
- Published
- 2010
41. Transport of Chitosan-DNA nanoparticles in human intestinal M-cell model versus normal intestinal enterocytes
- Author
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Irina Kadiyala, Kam W. Leong, Krishnendu Roy, Janet M. Rice, and Yihua Loo
- Subjects
Enterocyte ,Pharmaceutical Science ,Biology ,Models, Biological ,Intestinal absorption ,Article ,medicine ,Humans ,Lymphocytes ,Chitosan ,Drug Carriers ,Genetic transfer ,Biological Transport ,DNA ,Hydrogen-Ion Concentration ,Small intestine ,Coculture Techniques ,medicine.anatomical_structure ,Enterocytes ,Transcytosis ,Biochemistry ,Intestinal Absorption ,Caco-2 ,Paracellular transport ,Biophysics ,Nanoparticles ,Caco-2 Cells ,Drug carrier - Abstract
Oral vaccination is one of the most promising applications of polymeric nanoparticles. Using two different in vitro cellular models to partially reproduce the characteristics of intestinal enterocytes and M-cells, this study demonstrates that nanoparticle transport through the M-cell co-culture model is 5-fold that of the intestinal epithelial monolayer, with at least 80% of the chitosan-DNA nanoparticles uptaken in the first 30 min. Among the properties of nanoparticles studied, ligand decoration has the most dramatic effect on the transcytosis rate: transferrin modification enhances transport through both models by 3- to 5-fold. The stability of the nanoparticles also affects transport kinetics. Factors which de-stabilize the nanoparticles, such as low charge (N/P) ratio and addition of serum, result in aggregation and in turn decreases transport efficiency. Of these stability factors, luminal pH is of great interest as an increase in pH from 5.5 to 6.4 and 7.4 leads to a 3- and 10-fold drop in nanoparticle transport, respectively. Since soluble chitosan can act as an enhancer to increase paracellular transport by up to 60%, this decrease is partially attributed to the soluble chitosan precipitating near neutral pH. The implication that chitosan-DNA nanoparticles are more stable in the upper regions of the small intestine suggests that higher uptake rates may occur in the duodenum compared to the ileum and the colon.
- Published
- 2009
42. Biomaterials As Stem Cell Niche
- Author
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Krishnendu Roy and Krishnendu Roy
- Subjects
- Biomedical materials, Stem cells
- Abstract
Recent developments in stem cell biology have opened new directions in cell therapy. This book provides the state-of-the-art developments in using biomaterials as artificial niches for engineering stem cells, both for the purpose of better understanding their biology under 3D biomimetic conditions as well as for developing new strategies for efficient long term maintenance and directed differentiation of stem cells into various therapeutic lineages. Animal and human stem cells of both embryonic and adult origin are discussed with applications ranging from nerve regeneration, orthopedics, cardiovascular therapy, blood cell generation and cancer therapy. Both synthetic and natural biomaterials are reviewed with emphasis on how material-stem cell interactions direct specific signaling pathways and ultimately modulate the cell fate. This book is valuable for biomaterial scientists, tissue engineers, clinicians as well as stem cell biologists involved in basic research and applications of adult and embryonic stem cells.
- Published
- 2010
43. Efficient Gene Silencing in Lungs and Liver Using Imidazole-Modified Chitosan As a Nanocarrier for Small Interfering RNA.
- Author
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Bilal Ghosn, Ankur Singh, Mu Li, Alexander V. Vlassov, Chris Burnett, Nitin Puri, and Krishnendu Roy
- Published
- 2010
- Full Text
- View/download PDF
44. Encapsulation of Nucleic Acids and Opportunities for Cancer Treatment.
- Author
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Lisa Brannon-Peppas, Bilal Ghosn, Krishnendu Roy, and Kenneth Cornetta
- Subjects
NUCLEIC acids ,DRUGS ,CELLS ,CANCER - Abstract
Abstract??The development of nucleic acid drugs for the treatment of various cancers has shown great promise in recent years. However, efficient delivery of these drugs to target cells remains a significant challenge towards the successful development of such therapies. This review provides a comprehensive overview of encapsulation technologies being developed for the delivery of nucleic acid-based anti-cancer agents. Both micro and nanoparticles systems are discussed along with their use in delivering plasmid DNA as well as oligonucleotides. The majority of the systems discussed have used DNA immunotherapy as the potential mode of anticancer therapy, which requires targeting to antigen presenting cells. Other applications, including those with oligonucleotides, focus on targeting tumor cells directly. The results obtained so far show the excellent promise of encapsulation as an efficient means of delivering therapeutic nucleic acids. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
45. Biomimetic Three-Dimensional Cultures Significantly Increase Hematopoietic Differentiation Efficacy of Embryonic Stem Cells.
- Author
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Hui Liu and Krishnendu Roy
- Published
- 2005
46. Cervical cancer chemoprevention, vaccines, and surrogate endpoint biomarkers.
- Author
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Michele Follen, Frank L. Meyskens, Ronald D. Alvarez, Joan L. Walker, Maria C. Bell, Karen Adler Storthz, Jagannadha Sastry, Krishnendu Roy, Rebecca Richards-Kortum, and Terri L. Cornelison
- Published
- 2003
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