15 results on '"Koehler, Jonas"'
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2. SAIPy: A Python package for single-station earthquake monitoring using deep learning
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Li, Wei, Chakraborty, Megha, Cartaya, Claudia Quinteros, Köhler, Jonas, Faber, Johannes, Meier, Men-Andrin, Rümpker, Georg, and Srivastava, Nishtha
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- 2024
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3. Exploring a CNN model for earthquake magnitude estimation using HR-GNSS data
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Quinteros-Cartaya, Claudia, Köhler, Jonas, Li, Wei, Faber, Johannes, and Srivastava, Nishtha
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- 2024
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4. Dual centrifugation as a novel and efficient method for the preparation of lipodisks
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Ali, Sajid, Koehler, Jonas K., Silva, Luís, Gedda, Lars, Massing, Ulrich, and Edwards, Katarina
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- 2024
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5. Boltzmann generators : Sampling equilibrium states of many-body systems with deep learning
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Noé, Frank, Olsson, Simon, Köhler, Jonas, and Wu, Hao
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- 2019
6. Preparation of Nanosized Pharmaceutical Formulations by Dual Centrifugation.
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Koehler, Jonas K., Schmager, Stefanie, Bender, Valentin, Steiner, Denise, and Massing, Ulrich
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DRUGS , *POLYMERSOMES , *CENTRIFUGATION , *LIPOSOMES , *NANOCRYSTALS , *NANOTECHNOLOGY - Abstract
Dual centrifugation (DC) is an innovative in-vial homogenization and in-vial nanomilling technique that has been in use for the preparation of liposomes for more than one decade. Since then, DC has continuously been developed for preparing various liposomes and other lipid nanoparticles including emulsions and solid lipid nanoparticles (SLNs) as well as polymersomes and nanocrystals. Improvements in equipment technology have been achieved over the past decade, so that DC is now on its way to becoming the quasi-standard for the simple, fast, and aseptic production of lipid nanoparticles and nanocrystals in small and medium batch sizes, including the possibility of simple and fast formulation screening or bedside preparations of therapeutic nanoparticles. More than 68 publications in which DC was used to produce nanoparticles have appeared since then, justifying an initial review of the use of DC for pharmaceutical nanotechnology. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Real-time Earthquake Monitoring using Deep Learning: a case study on Turkey Earthquake Aftershock Sequence
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Li, Wei, Koehler, Jonas, Chakraborty, Megha, Quinteros-Cartaya, Claudia, Ruempker, Georg, and Srivastava, Nishtha
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Physics - Geophysics ,FOS: Physical sciences ,Geophysics (physics.geo-ph) - Abstract
Seismic phase picking and magnitude estimation are essential components of real time earthquake monitoring and earthquake early warning systems. Reliable phase picking enables the timely detection of seismic wave arrivals, facilitating rapid earthquake characterization and early warning alerts. Accurate magnitude estimation provides crucial information about the size of an earthquake and potential impact. Together, these steps contribute to effective earthquake monitoring, enhancing our ability to implement appropriate response measures in seismically active regions and mitigate risks. In this study, we explore the potential of deep learning in real time earthquake monitoring. To that aim, we begin by introducing DynaPicker which leverages dynamic convolutional neural networks to detect seismic body wave phases. Subsequently, DynaPicker is employed for seismic phase picking on continuous seismic recordings. To showcase the efficacy of Dynapicker, several open source seismic datasets including window format data and continuous seismic data are used for seismic phase identification, and arrival time picking. Additionally,the robustness of DynaPicker in classifying seismic phases was tested on the low magnitude seismic data polluted by noise. Finally, the phase arrival time information is integrated into a previously published deep learning model for magnitude estimation. This workflow is then applied and tested on the continuous recording of the aftershock sequences following the Turkey earthquake to detect the earthquakes, seismic phase picking and estimate the magnitude of the corresponding event. The results obtained in this case study exhibit a high level of reliability in detecting the earthquakes and estimating the magnitude of aftershocks following the Turkey earthquake.
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- 2022
8. AWESAM: A Python Module for Automated Volcanic Event Detection Applied to Stromboli
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Fenner, Darius, Ruempker, Georg, Li, Wei, Chakraborty, Megha, Faber, Johannes, Koehler, Jonas, Stoecker, Horst, and Srivastava, Nishtha
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Physics - Geophysics ,FOS: Physical sciences ,Geophysics (physics.geo-ph) - Abstract
Many active volcanoes in the world exhibit Strombolian activity, which is typically characterized by relatively frequent mild events and also by rare and much more destructive major explosions and paroxysms. Detailed analyses of past major and minor events can help to understand the eruptive behavior of the volcano and the underlying physical and chemical processes. Catalogs of volcanic eruptions may be established using continuous seismic recordings at stations in the proximity of volcanoes. However, in many cases, the analysis of the recordings relies heavily on the manual picking of events by human experts. Recently developed Machine Learning-based approaches require large training data sets which may not be available a priori. Here, we propose an alternative automated approach: the Adaptive-Window Volcanic Event Selection Analysis Module (AWESAM). This process of creating event catalogs consists of three main steps: (i) identification of potential volcanic events based on squared ground-velocity amplitudes, an adaptive MaxFilter, and a prominence threshold. (ii) catalog consolidation by comparing and verification of the initial detections based on recordings from two different seismic stations. (iii) identification and exclusion of signals from regional tectonic earthquakes. The software package is applied to publicly accessible continuous seismic recordings from two almost equidistant stations at Stromboli volcano in Italy. We tested AWESAM by comparison with a hand-picked catalog and found that around 95 percent of the eruptions with a signal-to-noise ratio above three are detected. In a first application, we derive a new amplitude-frequency relationship from over 290.000 volcanic events at Stromboli during 2019-2020. The module allows for a straightforward generalization and application to other volcanoes worldwide.
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- 2021
9. Tailoring the Lamellarity of Liposomes Prepared by Dual Centrifugation.
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Koehler, Jonas K., Gedda, Lars, Wurster, Leonie, Schnur, Johannes, Edwards, Katarina, Heerklotz, Heiko, and Massing, Ulrich
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CENTRIFUGATION , *LIPOSOMES , *ELECTRON microscopy , *FLUORESCENCE spectroscopy - Abstract
Dual centrifugation (DC) is a new and versatile technique for the preparation of liposomes by in-vial homogenization of lipid-water mixtures. Size, size distribution, and entrapping efficiencies are strongly dependent on the lipid concentration during DC-homogenization. In this study, we investigated the detailed structure of DC-made liposomes. To do so, an assay to determine the ratio of inner to total membrane surfaces of liposomes (inaccessible surface) was developed based on either time-resolved or steady-state fluorescence spectroscopy. In addition, cryogenic electron microscopy (cryo-EM) was used to confirm the lamellarity results and learn more about liposome morphology. One striking result leads to the possibility of producing a novel type of liposome—small multilamellar vesicles (SMVs) with low PDI, sizes of the order of 100 nm, and almost completely filled with bilayers. A second particularly important finding is that VPGs can be prepared to contain open bilayer structures that will close spontaneously when, after storage, more aqueous phase is added and liposomes are formed. Through this process, a drug can effectively be entrapped immediately before application. In addition, dual centrifugation at lower lipid concentrations is found to produce predominantly unilamellar vesicles. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Sunda-arc seismicity: continuing increase of high-magnitude earthquakes since 2004
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Srivastava, Nishtha, Koehler, Jonas, Nava, F. Alejandro, Sayed, Omar El, Chakraborty, Megha, Steinheimer, Jan, Faber, Johannes, Kies, Alexander, Thingbaijam, Kiran Kumar, Zhou, Kai, Ruempker, Georg, and Stoecker, Horst
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Physics - Geophysics ,FOS: Physical sciences ,Geophysics (physics.geo-ph) - Abstract
Spatial and temporal data for earthquakes with magnitude M greater than or equal to 6.5 can provide crucial information about the seismic history and potential for large earthquakes in a region. We analyzed approximately 313,500 events that occurred in the Sunda-arc region during the last 56 years, from 1964 to 2020, reported by the International Seismological Center. We report a persistent increase in the annual number of the events with mb greater than or equal to 6.5. We tested this increase against the null hypothesis and discarded the possibility of the increase being due to random groupings. The trend given by Auto-Regressive Integrated Moving Average suggests continuing increase of such large-magnitude events in the region during the next decade. At the same time, the computed Gutenberg Richter b value shows anomalies that can be related to the occurrence of the mega 2004 Sumatra earthquake, and to possible state of high tectonic stress in the eastern parts of the region.
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- 2021
11. Drought in Northern Italy: Long Earth Observation Time Series Reveal Snow Line Elevation to Be Several Hundred Meters Above Long-Term Average in 2022.
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Koehler, Jonas, Dietz, Andreas J., Zellner, Peter, Baumhoer, Celia A., Dirscherl, Mariel, Cattani, Luca, Vlahović, Živa, Alasawedah, Mohammad Hussein, Mayer, Konrad, Haslinger, Klaus, Bertoldi, Giacomo, Jacob, Alexander, and Kuenzer, Claudia
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TIME series analysis , *DROUGHT management , *MEDIAN (Mathematics) , *RUNOFF , *DROUGHTS , *MELTWATER , *REMOTE-sensing images - Abstract
The hydrological drought in Northern Italy in 2022 was, in large part, the consequence of a snow drought in the Italian Alps in the winter of 2021/22 and the resulting deficit of melt water runoff. In this communication, we assessed the snow-cover dynamics in nine Alpine Italian catchments using long time series of satellite-derived snow line elevation (SLE) measurements. We compared the SLE of the hydrological year 2021/22 to the long-term dynamics of 1985–2021. In early 2022, the SLE was located several hundred meters above the expected median values in all of the nine catchments. This resulted in deficits of snow-covered area of up to 83% in the Western Alps (catchment of Sesia, March 2022) and up to 61% in the Eastern Alps (Brenta, March 2022) compared to the long-term median. Although snow-cover data from optical satellite imagery do not contain information about snow depth and water content, in a preliminary qualitative analysis, the derived SLE dynamics show good agreement with the Standardized Snowpack Index (SSPI) which is based on the snow water equivalent (SWE). While the exact relationships between SLE, SWE, and runoff have to be explored further on the catchment basis, long-time series of SLE may have potential for use in drought early warning systems. [ABSTRACT FROM AUTHOR]
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- 2022
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12. Towards Forecasting Future Snow Cover Dynamics in the European Alps—The Potential of Long Optical Remote-Sensing Time Series.
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Koehler, Jonas, Bauer, André, Dietz, Andreas J., and Kuenzer, Claudia
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TIME series analysis , *INDEPENDENT variables , *RANDOM forest algorithms , *LANDSAT satellites , *REMOTE sensing , *SNOW cover , *FORECASTING - Abstract
Snow is a vital environmental parameter and dynamically responsive to climate change, particularly in mountainous regions. Snow cover can be monitored at variable spatial scales using Earth Observation (EO) data. Long-lasting remote sensing missions enable the generation of multi-decadal time series and thus the detection of long-term trends. However, there have been few attempts to use these to model future snow cover dynamics. In this study, we, therefore, explore the potential of such time series to forecast the Snow Line Elevation (SLE) in the European Alps. We generate monthly SLE time series from the entire Landsat archive (1985–2021) in 43 Alpine catchments. Positive long-term SLE change rates are detected, with the highest rates (5–8 m/y) in the Western and Central Alps. We utilize this SLE dataset to implement and evaluate seven uni-variate time series modeling and forecasting approaches. The best results were achieved by Random Forests, with a Nash–Sutcliffe efficiency (NSE) of 0.79 and a Mean Absolute Error (MAE) of 258 m, Telescope (0.76, 268 m), and seasonal ARIMA (0.75, 270 m). Since the model performance varies strongly with the input data, we developed a combined forecast based on the best-performing methods in each catchment. This approach was then used to forecast the SLE for the years 2022–2029. In the majority of the catchments, the shift of the forecast median SLE level retained the sign of the long-term trend. In cases where a deviating SLE dynamic is forecast, a discussion based on the unique properties of the catchment and past SLE dynamics is required. In the future, we expect major improvements in our SLE forecasting efforts by including external predictor variables in a multi-variate modeling approach. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Spatial Modelling and Prediction with the Spatio-Temporal Matrix: A Study on Predicting Future Settlement Growth.
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Wang, Zhiyuan, Bachofer, Felix, Koehler, Jonas, Huth, Juliane, Hoeser, Thorsten, Marconcini, Mattia, Esch, Thomas, and Kuenzer, Claudia
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RECEIVER operating characteristic curves ,PREDICTION models ,TIME series analysis ,INDEPENDENT films - Abstract
In the past decades, various Earth observation-based time series products have emerged, which have enabled studies and analysis of global change processes. Besides their contribution to understanding past processes, time series datasets hold enormous potential for predictive modeling and thereby meet the demands of decision makers on future scenarios. In order to further exploit these data, a novel pixel-based approach has been introduced, which is the spatio-temporal matrix (STM). The approach integrates the historical characteristics of a specific land cover at a high temporal frequency in order to interpret the spatial and temporal information for the neighborhood of a given target pixel. The provided information can be exploited with common predictive models and algorithms. In this study, this approach was utilized and evaluated for the prediction of future urban/built-settlement growth. Random forest and multi-layer perceptron were employed for the prediction. The tests have been carried out with training strategies based on a one-year and a ten-year time span for the urban agglomerations of Surat (India), Ho-Chi-Minh City (Vietnam), and Abidjan (Ivory Coast). The slope, land use, exclusion, urban, transportation, hillshade (SLEUTH) model was selected as a baseline indicator for the performance evaluation. The statistical results from the receiver operating characteristic curve (ROC) demonstrate a good ability of the STM to facilitate the prediction of future settlement growth and its transferability to different cities, with area under the curve (AUC) values greater than 0.85. Compared with SLEUTH, the STM-based model achieved higher AUC in all of the test cases, while being independent of the additional datasets for the restricted and the preferential development areas. [ABSTRACT FROM AUTHOR]
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- 2022
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14. Forecasting spatio-temporal dynamics on the land surface using Earth Observation data — a review
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Koehler, Jonas and Kuenzer, Claudia
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ddc:550 ,ddc:526 - Abstract
Reliable forecasts on the impacts of global change on the land surface are vital to inform the actions of policy and decision makers to mitigate consequences and secure livelihoods. Geospatial Earth Observation (EO) data from remote sensing satellites has been collected continuously for 40 years and has the potential to facilitate the spatio-temporal forecasting of land surface dynamics. In this review we compiled 143 papers on EO-based forecasting of all aspects of the land surface published in 16 high-ranking remote sensing journals within the past decade. We analyzed the literature regarding research focus, the spatial scope of the study, the forecasting method applied, as well as the temporal and technical properties of the input data. We categorized the identified forecasting methods according to their temporal forecasting mechanism and the type of input data. Time-lagged regressions which are predominantly used for crop yield forecasting and approaches based on Markov Chains for future land use and land cover simulation are the most established methods. The use of external climate projections allows the forecasting of numerical land surface parameters up to one hundred years into the future, while auto-regressive time series modeling can account for intra-annual variances. Machine learning methods have been increasingly used in all categories and multivariate modeling that integrates multiple data sources appears to be more popular than univariate auto-regressive modeling despite the availability of continuously expanding time series data. Regardless of the method, reliable EO-based forecasting requires high-level remote sensing data products and the resulting computational demand appears to be the main reason that most forecasts are conducted only on a local scale. In the upcoming years, however, we expect this to change with further advances in the field of machine learning, the publication of new global datasets, and the further establishment of cloud computing for data processing.
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- 2020
15. Screening for Optimal Liposome Preparation Conditions by Using Dual Centrifugation and Time-Resolved Fluorescence Measurements.
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Koehler JK, Schnur J, Heerklotz H, and Massing U
- Abstract
Dual centrifugation (DC) is a novel in-vial homogenization technique for the preparation of liposomes in small batch sizes under gentle and sterile conditions which allows encapsulation efficiencies ( EE ) for water soluble compounds of >50%. Since liposome size, size distribution (PDI), and EE depend on the lipid concentration used in the DC process, a screening method to find optimal lipid concentrations for a defined lipid composition was developed. Four lipid mixtures consisting of cholesterol, hydrogenated or non-hydrogenated egg PC, and/or PEG-DSPE were screened and suitable concentration ranges could be identified for optimal DC homogenization. In addition to the very fast and parallel liposome preparation of up to 40 samples, the screening process was further accelerated by the finding that DC generates homogeneously mixed liposomes from a macroscopic lipid mixture without the need to initially prepare a molecularly mixed lipid film from an organic solution of all components. This much simpler procedure even works for cholesterol containing lipid blends, which could be explained by a nano-milling of the cholesterol crystals during DC homogenization. Furthermore, EE determination was performed by time-resolved fluorescence measurements of calcein-loaded liposomes without removing the non-entrapped calcein. The new strategy allows the rapid characterization of a certain lipid composition for the preparation of liposomes within a working day.
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- 2021
- Full Text
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