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The increase in greenhouse gas (GHG) emissions has resulted in climate change and global warming. Human activities in many sectors, including agriculture, contribute to approximately 9.2% of total GHG emissions from Annex I countries. An argument on issues of livestock being the highest contributor to GHG emissions has grown since FAO’s 2006 report Livestock’s Long Shadow. The issue has continued growing, conflicting the importance of the industry in terms of food security and livelihoods, thus, monitoring GHG emission from this sector is vital. The most commonly used methods for calculating GHG emissions from the livestock sector are life cycle assessment (LCA) and the GHG inventory. Although the LCA presents information on the impacts of the livestock industry on the environment, the GHG inventory is the main tool used internationally for GHG reporting. This review comprehensively discusses the source of GHG emissions from the livestock industry and its estimation methodology, as well as the current strategies for mitigating these emissions.

DEVS (Discrete Event System Specification) is widely used in modeling and simulation fields to design, validate, and implement complex response systems. DEVS provides a robust formalism for system design using event-driven, state-based models with explicitly defined temporal information. We extend the RTL-DEVS model based on DEVS formalism to enable part of Verilog simulation in DEVS-based simulation tools. The simulation based on RTL-DEVS methodology, which imitates Verilog’s testbench and behavioral module, confirmed through experiments that RTL simulation can be performed sufficiently through the code elaboration process. In multiple simulation results, Verilog simulation and RTL-DEVS-based simulation were able to output equivalent results under limited conditions. DEVS formalism-based modeling can be extended to other DEVS-based simulators when using model-type exchange tools, and this means that the advanced functions or classes of RTL simulation tools can be applied using higher-level language tools.

Routine measurements of carbonaceous species in PM2.5 inculidng organic carbon (OC), elemental carbon (EC), water-soluble organic carbon (WSOC), and humic-like-substance carbon (HULIS-C) in PM2.5 were performed at Anmyeon Island (AI) to clarify the seasonal variation and carbonaceous aerosol concentrations at a background site in Korea between 2015 and 2016. The annual average OC and EC concentrations were 4.52±3.25 μg/m3 and 0.46±0.28 μg/m3, respectively, and there were no clear seasonal variations in OC and EC concentrations. The average concentrations of WSOC and water-insoluble organic carbon (WISOC) were 2.56±1.95 μg/m3 and 1.96±1.45 μg/m3, respectively, and their composition in OC showed high temporal variations. A low correlation between WISOC and EC was observed, while WSOC concentrations were highly correlated with secondary organic carbon concentrations, which were estimated using the EC tracer method. The results indicate that the formation of secondary organic aerosols is a major factor for the determination of WSOC concentrations in this region. HULIS-C was the major component of WSOC, accounting for 39-99% of WSOC and the average concentration was 1.88±1.52 μg/m3. Two distinct periods with high carbonaceous speciess in PM2.5 were observed and characterized by their OC/EC ratios. The high concentration of OC with high ratio of OC/EC was due to the influence of a mixture of emissions from biomass burning and secondary formation transported from outside AI. While, the high concentrations of OC and EC with low OC/EC ratio were related to local vehicular emissions.

Abstract Tumor cells shed an abundance of extracellular vesicles (EVs) to body fluids containing bioactive molecules including DNA, RNA, and protein. Investigations in the field of tumor-derived EVs open a new horizon in understanding cancer biology and its potential as cancer biomarkers as well as platforms for personalized medicine. This study demonstrates that successfully isolated EVs from plasma and bronchoalveolar lavage fluid (BALF) of non-small cell lung cancer (NSCLC) patients contain DNA that can be used for EGFR genotyping through liquid biopsy. In both plasma and BALF samples, liquid biopsy results using EV DNA show higher accordance with conventional tissue biopsy compared to the liquid biopsy of cfDNA. Especially, liquid biopsy with BALF EV DNA is tissue-specific and extremely sensitive compared to using cfDNA. Furthermore, use of BALF EV DNA also demonstrates higher efficiency in comparison to tissue rebiopsy for detecting p.T790 M mutation in the patients who developed resistance to EGFR-TKIs. These finding demonstrate possibility of liquid biopsy using EV DNA potentially replacing the current diagnostic methods for more accurate, cheaper, and faster results.

Routine measurements of carbonaceous species in PM2.5 inculidng organic carbon (OC), elemental carbon (EC), water-soluble organic carbon (WSOC), and humiclike- substance carbon (HULIS-C) in PM2.5 were performed at Anmyeon Island (AI) to clarify the seasonal variation and carbonaceous aerosol concentrations at a background site in Korea between 2015 and 2016. The annual average OC and EC concentrations were 4.52±3.25 µg/m3 and 0.46±0.28 µg/m3, respectively, and there were no clear seasonal variations in OC and EC concentrations. The average concentrations of WSOC and waterinsoluble organic carbon (WISOC) were 2.56±1.95 µg/m3 and 1.96±1.45 µg/m3, respectively, and their composition in OC showed high temporal variations. A low correlation between WISOC and EC was observed, while WSOC concentrations were highly correlated with secondary organic carbon concentrations, which were estimated using the EC tracer method. The results indicate that the formation of secondary organic aerosols is a major factor for the determination of WSOC concentrations in this region. HULIS-C was the major component of WSOC, accounting for 39-99% of WSOC and the average concentration was 1.88±1.52 µg/m3. Two distinct periods with high carbonaceous speciess in PM2.5 were observed and characterized by their OC/EC ratios. The high concentration of OC with high ratio of OC/EC was due to the influence of a mixture of emissions from biomass burning and secondary formation transported from outside AI. While, the high concentrations of OC and EC with low OC/EC ratio were related to local vehicular emissions. [ABSTRACT FROM AUTHOR]

Background: Co-existence or subsequent isolation of multiple nontuberculous mycobacteria (NTM) species in same patient has been reported. However, clinical significance of these observations is unclear. The aim of this study was to determine clinical implications of changes of NTM species during or after treatment in patients with NTM lung disease.Methods: Patients with NTM lung disease, who experienced changes of NTM species during treatment or within 2 years of treatment completion between January 1, 2009 and December 31, 2015, were included in the analysis. Demographic, clinical, microbiological, and radiographic data were reviewed and analyzed.Results: During the study period, 473 patients were newly diagnosed with NTM lung disease. Treatment was started in 164 patients (34.6%). Among these 164 patients, 16 experienced changes of NTM species during or within 2 years of treatment completion. Seven showed changes from M. avium complex (MAC) to M. abscessus subspecies abscessus (MAA) and five patients displayed changes from M. abscessus subspecies massiliense (MAM) to MAC. With isolation of new NTM species, 6 out of 7 patients with change from MAC to MAA reported worsening of symptoms, whereas none of the five patients with change from MAM to MAC reported worsening of symptoms. All MAA isolated during or after treatment for MAC lung diseases showed inducible resistance to clarithromycin.Conclusions: Change of NTM species may occur during or after treatment for NTM lung disease. Especially, changes from MAC to MAA is accompanied by symptomatic and radiographic worsening as well as inducible resistance to clarithromycin. [ABSTRACT FROM AUTHOR]

Mobile grid is a combination of grid computing and mobile computing to build grid systems in a wireless mobile environment. The development of network technology is assisting in realizing mobile grid. Mobile grid based on established grid infrastructures needs effective resource management and reliable job scheduling because mobile grid utilizes not only static grid resources but also dynamic grid resources with mobility. However, mobile devices are considered as unavailable resources in traditional grids. Mobile resources should be integrated into existing grid sites. Therefore, this paper presents a mobile grid middleware interconnecting existing grid infrastructures with mobile resources and a mobile service agent installed on the mobile resources. This paper also proposes a mobile resource reliability-based job scheduling model in order to overcome the unreliability of wireless mobile devices and guarantee stable and reliable job processing. In the proposed job scheduling model, the mobile service agent calculates the mobile resource reliability of each resource by using diverse reliability metrics and predicts it. The mobile grid middleware allocated jobs to mobile resources by predicted mobile resource reliability. We implemented a simulation model that simplifies various functions of the proposed job scheduling model by using the DEVS (Discrete Event System Specification) which is the formalism for modeling and analyzing a general system. We also conducted diverse experiments for performance evaluation. Experimental results demonstrate that the proposed model can assist in improving the performance of mobile grid in comparison with existing job scheduling models. [ABSTRACT FROM AUTHOR]

The 26S proteasome, composed of the 20S core and the 19S regulatory complex, plays a central role in ubiquitin-dependent proteolysis by catalyzing degradation of polyubiquitinated proteins. In a search for proteins involved in regulation of the proteasome, we affinity purified the 19S regulatory complex from HeLa cells and identified a novel protein of 43 kDa in size as an associated protein. Immunoprecipitation analyses suggested that this protein specifically interacted with the proteasomal ATPases. Hence the protein was named proteasomal ATPase-associated factor 1 (PAAF1). Immunoaffinity purification of PAAF1 confirmed its interaction with the 19S regulatory complex and further showed that the 19S regulatory complex bound with PAAF1 was not stably associated with the 20S core. Overexpression of PAAF1 in HeLa cells decreased the level of the 20S core associated with the 19S complex in a dose-dependent fashion, suggesting that PAAF1 binding to proteasomal ATPases inhibited the assembly of the 26S proteasome. Proteasomal degradation assays using reporters based on green fluorescent protein revealed that overexpression of PAAF1 inhibited the proteasome activity in vivo. Furthermore, the suppression of PAAF1 expression that is mediated by small inhibitory RNA enhanced the proteasome activity. These results suggest that PAAF1 functions as a negative regulator of the proteasome by controlling the assembly/disassembly of the proteasome. [ABSTRACT FROM AUTHOR]

This article presents the design and development of a satellite cluster system that supports an interfederation communication in High Level Architecture (HLA)-compliant distributed simulation. The interfederation communication enables the execution of a complex, large-scale cluster system of distributed satellites that share the dispersed data assets among satellite components collaboratively. After a brief review of the HLA bridge for interfederation communication, the authors discuss the design issues related to a satellite cluster system that provides cluster management, interfederation communication, and communication data management. They analyze system performance and scalability for centralized and decentralized configurations. The empirical results on the heterogeneous OS distributed system indicate that the satellite cluster system is effective and scalable due to the use of interfederation communication and the reduction of data transmission. [ABSTRACT FROM AUTHOR]

A 1.8-V 2-Gb NAND flash memory has been successfully developed on a 90-nm CMOS STI process technology, resulting in a 141-mm² die size and a 0.044-µm² effective cell. For the higher level integration, critical layers are patterned with KrF photolithography. The device has three notable differences from previous generations. 1) The cells are organized in a single (16K+512) column and 128K row array by adopting a one-sided row decoder in order to minimize the die size. 2) The bitline precharge level is set to 0.9 V in order to increase on-cell current. 3) During the program operations, the string select line, which connects the NAND cell strings to the bitlines, is biased with sub-V[sub CC] in order to avoid program disturbance issues. [ABSTRACT FROM AUTHOR]

Reports on the fabrication of a high-performance one-gigabit NAND flash memory with 0.12–micrometer complementary metal oxide semiconductor STI technology. Application of a 32-cell NAND structure; Voltage generated by the pseudo-four-phase charge pump circuit; Provision of the copy-back function for on-chip garbage collection; Attainment of a measured disturbance free-window.

Internal auditory canal (IAC) metastasis due to leptomeningeal carcinomatosis (LMC) from gastric cancer (GC) has rarely been reported. Early manifestation of symptoms, such as hearing loss, vertigo and facial paralysis, in cases of IAC metastasis due to LMC may facilitate the early detection of brain metastasis. To the best of our knowledge, the present study is the first to report IAC metastasis due to LMC in human epidermal growth factor receptor 2 (Her2)-positive GC. This study reports a case of an Her2-positive GC patient with LMC including IAC metastasis, who presented with acute sensorineural hearing loss, ipsilateral facial paralysis and vertigo during trastuzumab containing chemotherapy. The current study also discusses the early diagnosis and management of this complicated condition, demonstrating that clinical suspicion is key for a prompt diagnosis and proper management of LMC including IAC metastasis in Her2-positive GC. [ABSTRACT FROM AUTHOR]

The DEVS model, designed for general discrete event simulation, explores the event status and time advance of all DEVS atomic models deployed at the time of the simulation, and then performs the scheduled simulation step. Each simulation step is accompanied by a re-exploration the event status and time advance, which is needed for maintaining the casual order of the entire model. It is time consuming to simulate a large-scale DEVS model. In a similar vein, attempts to perform an HDL simulation in a DEVS space increase simulation costs by incurring repeated search costs for model transitions. In this study, we performed a statistical analysis of engine behavior to improve simulation speed and we proposed a DP-based memoization technique for the coupled model. Through our method, we can expect significant performance improvements that range statistically from 7.4 to 11.7 times.

Studies proteins involved in the regulation of cullin-containing E3 ubiquitin ligases by immunopurifying CUL4B-containing complex from HeLa cells and by identifying TIP120A as an associated protein by mass spectrometry. Role of cullin-containing ubiquitin-protein isopeptide ligases in regulating the abundance of key proteins involved in cellular processes such as cell cycle and cytokine signaling; Stability of the interaction of TIP120A with cullin family proteins.

Abstract Background A three-drug regimen (macrolide, ethambutol, and rifampicin) is recommended for the treatment of Mycobacterium avium complex pulmonary disease (MAC-PD). Although macrolide has proven efficacy, the role of ethambutol and rifampicin in patients without acquired immune deficiency syndrome is not proven with clinical studies. We aimed to clarify the roles of ethambutol and rifampicin in the treatment of MAC-PD. Methods Patients treated for MAC-PD between March 1st, 2009 and October 31st, 2018 were reviewed retrospectively. Rates of culture conversion, microbiological cure, treatment failure, and recurrence were compared according to the maintenance (≥6 months) of ethambutol or rifampicin with macrolide. Results Among the 237 patients, 122 (51.5%) maintained ethambutol and rifampicin with macrolide, 58 (24.5%) maintained ethambutol and macrolide, 32 (13.5%) maintained rifampicin and macrolide, and 25 (10.6%) maintained macrolide only. Culture conversion was reached for 190/237 (80.2%) patients and microbiological cure was achieved for 129/177 (72.9%) who completed the treatment. Treatment failure despite ≥12 months of treatment was observed in 66/204 (32.4%), and recurrence was identified in 16/129 (12.4%) who achieved microbiological cure. Compared with maintenance of macrolide only, maintenance of ethambutol, rifampicin or both with macrolide were associated with higher odds of culture conversion [odds ratio (OR), 95% confidence interval (CI): 18.06, 3.67–88.92; 15.82, 2.38–105.33; and 17.12, 3.93–74.60, respectively]. Higher odds of microbiological cure were associated with maintenance of both ethambutol and rifampicin with macrolide (OR, 95% CI: 5.74, 1.54–21.42) and macrolide and ethambutol (OR, 95% CI: 5.12, 1.72–15.24) but not macrolide and rifampicin. Maintenance of both ethambutol and rifampicin with macrolide was associated with lower odds of treatment failure (OR, 95% CI: 0.09, 0.01–0.53) compared with macrolide only, while maintenance of one of these with macrolide was not. Maintenance of both ethambutol and rifampicin or one of these with macrolide did not decrease the probability of recurrence when compared with macrolide only. Conclusions Maintenance (≥6 months) of ethambutol and rifampicin with macrolide was associated with the most favorable treatment outcomes among patients with MAC-PD. Given the association between ongoing ethambutol use and microbiological cure, clinicians should maintain ethambutol unless definite adverse events develop.

Abstract Background EGFR genotyping in pulmonary adenocarcinoma patients who develop pleural effusions is mostly performed using cytology or cell block slides with low sensitivity. Liquid biopsy using the supernatant of pleural effusions may be more effective because they contain many components released by cancer cells. Extracellular vesicles (EVs) are known to carry oncogenic double-stranded DNA that is considered a notable biomarker. Here, we investigate the efficiency of liquid biopsy using cell-free DNA (cfDNA) and extracellular vesicle-derived DNA (EV-derived DNA) from the supernatant of pleural effusions for EGFR genotyping in patients with pulmonary adenocarcinoma. Methods Fifty pleural effusion samples from patients with pulmonary adenocarcinoma were evaluated. The supernatant, after removing the cell pellet by centrifugation, was used for liquid biopsy, and EVs were isolated from the pleural effusion by ultracentrifugation. EV-derived DNA and cfDNA were extracted separately, and EGFR genotyping was performed by the PNA clamping method. Results Among 32 patients who were EGFR-tyrosine kinase inhibitor (TKI) naïve with a known tissue EGFR genotype, liquid biopsy using EV-derived DNA from the pleural effusion supernatant showed 100% matching results with tissue EGFR genotyping in 19 EGFR mutant cases and detected three additional EGFR mutations in patients with wild-type (WT) tissue. Liquid biopsy using cfDNA from pleural effusion supernatants missed two cases of tissue-based EGFR mutations and found two additional EGFR mutation cases. In 18 patients who acquired resistance to EGFR-TKI, EGFR genotyping using EV-derived DNA from the pleural effusion supernatant detected the T790 M mutation in 13 of 18 (72.2%) patients, and this mutation was detected in 11 (61.1%) patients using cfDNA. By contrast, only three patients were found to present the T790 M mutation when using cell block or cytology slides. Conclusions Liquid biopsy using the supernatant of pleural effusions showed significantly improved results for EGFR genotyping compared to those using conventional cell block or cytology samples. Liquid biopsy using EV-derived DNA is promising for EGFR genotyping, including T790 M detection in pulmonary adenocarcinoma patients who develop pleural effusions.

In industrial applications, software related to computational lithography using a DP system method, which refers to how efficiently hardware resources are used, has a significant impact on performance. Because the amount of data to be processed per unit of time is comparatively large in the current semiconductor industry, the efficiency of hardware should be increased through job 12 scheduling by using the most efficient load balancing techniques possible. For efficient scheduling of the load balancer, these are necessary to predict the end time of a given job; this is calculated based on the performance of computing resources and the development of effective traffic distribution algorithms. Due to the high integration of semiconductor chips, the volume of mask exposure data has increased exponentially, the number of slave nodes is increasing, and most EDA tools require one license per DP node to perform a simulation. In this paper, in order to improve efficiency and reduce cost through more efficient load balancing scheduling, a new type of DEVS load balancing method was studied based on the existing industrial E-beam cluster model. The designed DEVS model showed up to four times the throughput of the existing legacy model for medium and large clusters when the BSF policy was applied.