27 results on '"Haider, Muhammad S."'
Search Results
2. Genetic Variability and Population Structure of Pakistani Potato Genotypes Using Retrotransposon-Based Markers.
- Author
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Mehmood, Asim, Dracatos, Peter M., Maqsood, Linta, Yousafi, Qudsia, Hussain, Abrar, Jaskani, Muhammad J., Sajid, Muhammad W., Haider, Muhammad S., and Hussain, Muhammad M.
- Subjects
GENETIC variation ,GENOTYPES ,GENETIC distance ,HETEROZYGOSITY ,ALLELES ,POTATOES - Abstract
Molecular germplasm characterization is essential for gathering information on favorable attributes and varietal improvement. The current study evaluated the genetic divergence and population structure of 80 potato genotypes collected from Punjab, Pakistan, using polymorphic retrotransposon-DNA-based markers (iPBS). A total of 11 iPBS primers generated 787 alleles with a mean value of 8.9 alleles per primer, of which ~95% were polymorphic across the 80 genotypes. Different variation attributes, such as mean expected heterozygosity (H = 0.21), mean unbiased expected heterozygosity (µHe = 0.22), and mean Shannon's information index (I = 0.32), showed the existence of sufficient genetic diversity in the studied potato genotypes. Analysis of molecular variance (AMOVA) showed that genetic variation within the population was higher (84%) than between populations (16%). A neighbor-joining tree was constructed based on the distance matrices that arranged the 80 genotypes into five distinct groups, and the genotypes FD61-3 and potato 2 had the highest genetic distance. A STRUCTURE analysis corroborated the dendrogram results and distributed the 80 genotypes also into five clusters. Our results determined that retrotransposon-based markers are highly polymorphic and could be used to evaluate genetic diversity between local and exotic potato genotypes. The genotypic data and population structure dissection analysis reported in this study will enhance potato varietal improvement and development. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Water productivity, yield and agronomic attributes of maize crop in response to varied irrigation levels and biochar--compost application.
- Author
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Zahr, Misbah B., Afta, Zill-E.-Huma, and Haider, Muhammad S.
- Subjects
BIOCHAR ,IRRIGATION ,SOIL amendments ,SUSTAINABLE agriculture ,WATER efficiency - Abstract
BACKGROUND: Due to the rapid increase in world population, the demand for freshwater is increasing day by day. There is also immense pressure on the agriculture sector to produce more food with limited supplies of water. About 75% of freshwater is used in crop production out of which 63% is lost due to poor farm practices and evapotranspiration. Enhancement of crop water productivity for sustainable agriculture production especially in areas having water scarcity plausibly contributes towards the solution of water scarcity. RESULTS: The combined application of biochar and compost has a highly significant impact on maize yield with increased grain production, i.e. 6.44 and 6.52 t ha
-1 at 60% irrigation level with combined application of biochar and compost as compared with control at 6.39 and 6.44 t ha-1 at 100% irrigation level in autumn and spring seasons, respectively, by saving 40% of water. Furthermore, the highest value of water productivity (1.51 and 1.16 kg m-3 ) was achieved at 60% irrigation level with combined application of soil amendments. Also, cost--benefit analysis has shown highest values of net benefit with soil organic amendments. CONCLUSIONS: It is concluded that addition of biochar and compost to soil has the potential to increase crop yield and growth even at low irrigation levels by enhancing water use efficiency. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
4. Comprehensive RNA-seq analysis revealed molecular pathways and genes associated with drought tolerance in wild soybean (Glycine soja Sieb. and Zucc.).
- Author
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Aleem, Muqadas, Raza, Muhammad M., Haider, Muhammad S., Atif, Rana M., Ali, Zulfiqar, Bhat, Javaid A., and Zhao, Tuanjie
- Subjects
DROUGHT tolerance ,SINGLE nucleotide polymorphisms ,RNA sequencing ,GLYCINE ,GENES ,SECONDARY metabolism ,SOYBEAN - Abstract
Drought stress at the germination stage is an important environmental stress limiting crop yield. Hence, our study investigated comparative root transcriptome profiles of four contrasting soybean genotypes viz., drought-tolerant (PI342618B/DTP and A214/DTL) and drought-sensitive (NN86-4/DSP and A195/DSL) under drought stress using RNA-Seq approach. A total of 4850 and 6272 differentially expressed genes (DEGs) were identified in tolerant (DTP and DTL) and sensitive (DSP and DSL) genotypes, respectively. Principle component analysis (PCA) and correlation analysis revealed higher correlation between DTP and DTL. Both gene ontology (GO) and MapMan analyses showed that the drought response was enriched in DEGs associated with water and auxin transport, cell wall/membrane, antioxidant activity, catalytic activity, secondary metabolism, signaling and transcription factor (TF) activities. Out of 981 DEGs screened from above terms, only 547 showed consistent opposite expression between contrasting genotypes. Twenty-eight DEGs of 547 were located on Chr.08 rich in QTLs and "Hotspot regions" associated with drought stress, and eight of them showed non-synonymous single nucleotide polymorphism. Hence, 10 genes (including above eight genes plus two hub genes) were predicated as possible candidates regulating drought tolerance, which needs further functional validation. Overall, the transcriptome profiling provided in-depth understanding about the genetic mechanism and candidate genes underlying drought tolerance in soybean. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
5. Brassinosteroid Regulates 3‑Hydroxy-3-methylglutaryl CoA Reductase to Promote Grape Fruit Development.
- Author
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Zheng, Ting, Dong, Tianyu, Haider, Muhammad S., Jin, Huanchun, Jia, Haifeng, and Fang, Jinggui
- Published
- 2020
- Full Text
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6. INCIDENCE OF PANTOEA AGGLOMERANS ASSOCIATED WITH BARNYARD GRASS (ECHINOCHLOA CRUSGALLI L.) IN PAKISTAN.
- Author
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Mushtaq, Sehrish, Shafiq, Muhammad, Hussain, Ummad, Ali, Freeha, Ali, Amna, Khan, Faiza, Asim, Muhammad, and Haider, Muhammad S.
- Subjects
ECHINOCHLOA crusgalli ,PLANT diseases ,PATHOGENIC microorganisms ,GRASS growing ,WEEDS - Abstract
Weeds are reservoirs for the survival of pathogenic microorganisms and cause of spread of infectious disease of plants through vectors. To minimize the spread of bacteria to other host crops, proper characterization is required to suggest suitable control strategy. Survey was conduct in December 2015, leaf blight was observed on barnyard grass growing in surroundings of citrus orchards located in Lahore, Pakistan. Isolation of the bacterium on nutrient agar medium was performed and their characterization based on morphological and biochemical tests. 16S rRNA was amplified directly with primers 27F/1492R, cloned and sequenced. Sequences were blast in NCBI data base which showed 99% identity to P. agglomerans strain. A neighbor-joining tree was generated with reported bacterial strain that were most closely to isolated strain P. agglomerans (LT592133). Pathogenicity test was conducted on barnyard grass with bacterial suspensions having 1.5 × 108 CFU/ml in controlled conditions to confirm Koch's postulates. According to results this is first report on the incidence of Pantoea agglomerans on Barnyard grass in Pakistan. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
7. Drought stress revealed physiological, biochemical and gene-expressional variations in 'Yoshihime' peach (Prunus Persica L) cultivar.
- Author
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Haider, Muhammad S., Kurjogi, Mahantesh M., Khalil-ur-Rehman, Muhammad, Pervez, Tariq, Songtao, Jiu, Fiaz, Muhammad, Jogaiah, Sudisha, Wang, Chen, and Fang, Jinggui
- Subjects
- *
PRUNUS , *WATER efficiency , *PEACH , *PHOTOSYNTHESIS , *FRUCTOSE - Abstract
It is indispensable to comprehend the mechanism that regulates plant responses to drought conditions to intensify the water use efficiency of stone fruits. The physiological, biochemical and molecular responses of drought-treated peach leaves were investigated. Results revealed that drought-treated plants manifested a significant attenuation in water potential as compared to control plants. Furthermore, sorbitol and proline contents were accumulated contrary to glucose, fructose, and sucrose that were dwindled significantly throughout the drought period. Similarly, the activities of antioxidant enzymes and expression pattern of related genes were hoisted to counter the lipid peroxidation in drought-treated plants. Moreover, reduced stomatal conductance has repressed the photosynthesis process and linked genes during drought stress. The expression level of regulatory genes (dehydration-responsive element-bindings and WRKYs) exhibited up-regulation in the drought-treated group. Overall, this study asserts that 'Yoshihime' peach cultivar possesses unique physiological, biochemical, and molecular responses under different spells of drought stress. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
8. Grapevine immune signaling network in response to drought stress as revealed by transcriptomic analysis.
- Author
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Haider, Muhammad S., Kurjogi, Mahantesh M., Khalil-Ur-Rehman, M., Fiaz, Muhammad, Pervaiz, Tariq, Jiu, Songtao, Haifeng, Jia, Chen, Wang, and Fang, Jinggui
- Subjects
- *
DROUGHT-tolerant plants , *CROP growth , *ABIOTIC stress , *SUPEROXIDE dismutase , *CROP physiology , *GENE expression in plants , *ABSCISIC acid , *JASMONIC acid - Abstract
Drought is a ubiquitous abiotic factor that severely impedes growth and development of horticulture crops. The challenge postured by global climate change is the evolution of drought-tolerant cultivars that could cope with concurrent stress. Hence, in this study, biochemical, physiological and transcriptome analysis were investigated in drought-treated grapevine leaves. The results revealed that photosynthetic activity and reducing sugars were significantly diminished which were positively correlated with low stomatal conductance and CO 2 exchange in drought-stressed leaves. Further, the activities of superoxide dismutase, peroxidase, and catalase were significantly actuated in the drought-responsive grapevine leaves. Similarly, the levels of abscisic acid and jasmonic acid were also significantly increased in the drought-stressed leaves. In transcriptome analysis, 12,451 differentially-expressed genes (DEGs) were annotated, out of which 8021 DEGs were up-regulated and 4430 DEGs were down-regulated in response to drought stress. In addition, the genes encoding pathogen-associated molecular pattern ( PAMP ) triggered immunity ( PTI ), including calcium signals, protein phosphatase 2C, calcineurin B-like proteins, MAPKs, and phosphorylation ( FLS2 and MEKK1 ) cascades were up-regulated in response to drought stress. Several genes related to plant-pathogen interaction pathway ( RPM1, PBS1, RPS5, RIN4, MIN7, PR1, and WRKYs ) were also found up-regulated in response to drought stress. Overall the results of present study showed the dynamic interaction of DEG in grapevine physiology which provides the premise for selection of defense-related genes against drought stress for subsequent grapevine breeding programs. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
9. Comparative Study on Reagents Involved in Grape Bud Break and Their Effects on Different Metabolites and Related Gene Expression during Winter.
- Author
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Khalil-Ur-Rehman, Muhammad, Wu Wang, Yan-Shuai Xu, Haider, Muhammad S., Chun-Xia Li, and Jian-Min Tao
- Subjects
GRAPE genetics ,GENE expression in plants ,ABSCISIC acid - Abstract
To elucidate promoting and inhibiting effects of hydrogen cynamide (HC) and abscisic acid (ABA) on quiescence release of grape buds, physiological and molecular approaches were used to explore the mechanisms of quiescence based on metabolic and gene expression analysis. Physiological and molecular mechanisms involved in bud quiescence of grape were studied before and after application of HC, ABA, and ABA-HC. The data showed that ABA inhibited proclamation of quiescence in grape buds and attenuated the influence of HC. Bud quiescence was promoted and regulated by HC and ABA pre-treatment on buds of grape cultivar "Shine Muscat" with 5% HC, 100 mM ABA and combination of ABA-HC (5% HCC100 mM ABA) during quiescence under forcing condition. Exogenous application of ABA elevated superoxide dismutase (SOD), peroxidase (POD) and ascorbate peroxidase (APX) related specific activities, while catalase (CAT) activity was increased during initial period of forcing and then decreased. The concentration of plant growth hormones including gibberellins (GA) and indole acetic acid increased by HC application but decreased the ABA contents under forcing condition. ABA increased the fructose content during quiescence under forcing condition while sucrose and total soluble sugars peaked in HC treated buds as compared to control. Genes related to ABA pathway, protein phosphatase 2C (PP2C family) were down regulated in the buds treated with HC, ABA and ABA-HC as compared to control while two genes related to GA pathway (GID1 family), out of which one gene showed down regulation during initial period of forcing while other gene was up regulated in response to HC and ABA-HC treatments as compared to control. Exogenous ABA application up regulated genes related to antioxidant enzymes as compared to control. The gene probable fructose-bisphosphate aldolase 1, chloroplastic-like, was up regulated in response to ABA treatment as compared to control. Analysis of metabolites and related gene expression pattern would provide a comprehensive view of quiescence after HC, ABA, and ABA-HC treatments in grape buds which may helpful for ultimate improvement in table grape production. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
10. Genome-Wide Identification and Analysis of the Type-B Authentic Response Regulator Gene Family in Peach (Prunus persica).
- Author
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Zeng, Jingjue, Zhu, Xudong, Haider, Muhammad S., Wang, Xicheng, Zhang, Cheng, and Wang, Chen
- Subjects
PHOSPHORYLATION ,DEPHOSPHORYLATION ,PLANT growth ,PROLINE ,ISOMERIZATION - Abstract
The type-B authentic response regulator (ARR-B) family members serve as DNA-binding transcriptional regulators, whose activities are probably regulated by phosphorylation/dephosphorylation, resulting in the rapid induction of type-A ARR genes. Type-B ARRs are believed to be involved in many biological processes, including cytokinin signaling, plant growth, and stress responses through a chaperone or by isomerization of proline residues during protein folding. The public availability of complete peach genome sequences allows the identification of 23 ARR-B genes by HMMER and blast analysis. Scaffold locations of these genes in the peach genome were determined, and the protein domain and motif organization of peach type-B ARRs were analyzed. The phylogenetic relationships between peach type-B ARRs were also assessed. The expression profiles of peach ARR-B genes revealed that most of the type-B ARRs showed high expression levels in tissues undergoing rapid cell division and may engage more cytokinins, like half-opened flowers, fruits at expansion stages, and young leaves. These findings not only contribute to a better understanding of the complex regulation of the peach ARR-B gene family, but also provide valuable information for future research in peach functional genomics. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
11. Genetic diversity of Fusarium Isolated from Members of Sternorrhyncha (Hemiptera): Entomopathogens against Bemisia tabaci.
- Author
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Anwar, Waheed, Haider, Muhammad S., Shahid, Ahmad A., Mushtaq, Hamid, Hameed, Usman, Ur Rehman, Muhammad Zia, and Iqbal, Muhammad Javed
- Abstract
In the present study, fungal flora from families Aleyrodidae, Aphididae and Coccidae of the order Hemiptera, suborder Sternorrhyncha, were isolated from three different agroecological zones of Pakistan. Fusarium equiseti, Fusarium solani, Fusarium incarnatum and Fusarium sp. along with other fungi were isolated and characterized morphologically as well as genetically by amplifying internal transcribed spacer region (ITS). Variability among Fusarium species based on ITS showed that it is not enough to score diversity within species and isolates. Additionally pathogenicity of isolated Fusarium species was evaluated against nymph and adult of Bemisia tabaci. Under controlled conditions different species of Fusarium restrained the growth of B. tabaci as compared with control. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
12. FIRST RECORD OF TRICHODERMA LONGIBRACHIATUM AS ENTOMOPATHOGENIC FUNGI AGAINST BEMISIA TABACI IN PAKISTAN.
- Author
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Anwar, Waheed, Subhani, Muhammad N., Haider, Muhammad S., Shahid, Ahmad A., Mushtaq, Hamid, Rehman, Muhammad Z. U., Hameed, Usman, and Javed, Sidra
- Subjects
SWEETPOTATO whitefly ,TRICHODERMA ,BIOLOGICAL control of insects - Abstract
The purpose of this research was to find indeginous insect associated fungi and their virulence against Bemisia tabaci. In present study, Trichoderma longibrachiatum was isolated from cotton mealybug and its pathogenicity test was conducted against Bemisia tabaci under controlled conditions. Entomopathogenic potential of T. longibrachiatum was accessed on nymphal and adult stages of B. tabaci. Entomopathogenic activity of T. longibrachiatum was severe on nymphal stage as compared to adult B. tabaci. Germination of conidia on outer surface of nymphal and adult stage of whitefly was also observed. The Results revealed that T. longibrachiatum is an entomopathogenic fungi against B. tabaci. Trichoderma is previously known as antagonistic organism against broad spectrum fungal as well as bacterial plant pathogens but it is not commonly found as insect pathogen. [ABSTRACT FROM AUTHOR]
- Published
- 2016
13. ISOLATION AND IN-VITRO SCREENING OF POTENTIAL ANTAGONISTIC RHIZOBACTERIA AGAINST PYTHIUM DEBARYANUM.
- Author
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Ali, Muhammad, Shahid, Ahmad A., and Haider, Muhammad S.
- Subjects
PYTHIUM debaryanum ,RHIZOBACTERIA ,BIOLOGICAL control of plant parasites - Abstract
A number of rhizobacterial isolates were isolated from the rhizospheric soil that was collected from infected chilli fields during survey. Main objective of the study was to identify the antagonistic bacterial isolates which have potential to restrict or suppressed the growth of Pythium debaryanum, the cause of chilli damping off. Thirty seven bacterial isolates were identified by their colony morphology and biochemical identification tests. Duel culture technique was applied to check the antagonistic behaviour of bacterial isolates. Among thirty seven bacterial isolates in which eleven isolates were shown significance antagonism towards the pathogenic fungal organism. Thirteen bacterial isolates (RB-17,RB-20,RB-21,RB-23,RB-25,RB-26,RB-27,RB-28,RB-31,RB-32,RB-34,RB36,RB-37) rendered between 77 and 96% inhibition while twenty four isolates rendered between 6 and 40%. Maximum inhibition was calculated in case of RB-37 (96%) and RB-34 (77%). Molecular identification was made by isolating bacterial DNA and amplification with 16SrRNA universal primers. PCR products were sequenced and phylogenetic analysis was done. Bacillus subtilis and Pseudomonas fluorescence were finally identified as potential antagonists against P.debaryanum. [ABSTRACT FROM AUTHOR]
- Published
- 2016
14. MORPHOLOGICAL CHARACTERIZATION OF ENDOPHYTIC BACTERIAL STRAINS ISOLATED FROM DISCOLORED RICE GRAIN.
- Author
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Ashfaq, Muhammad, Haider, Muhammad S., Ali, Amna, Ali, Muhammad, Saleem, Iqra, and Mubashar, Urooj
- Subjects
- *
RICE varieties , *BURKHOLDERIA , *ENTEROBACTER - Abstract
Various bacterial species were isolated from different rice varieties: Kainat, Basmati-385, Super basmati, Basmati-386, KSK-133, Basmati-198, Basmati-2000x1053-2-2, Kasur, Stg 567989 and Basmati-2000x33797-1 collected from all agro ecological zones of Pakistan. When plated infected grain samples gave various bacterial colonies on Luria Bertani (L.B) agar medium. The isolates were identified on the basis of various morphological and biochemical features. Out of 22 isolates, five showed rod cell shape in microscope. Sixteen biochemical tests were conducted to characterize 22 isolates of bacteria. Gram stain demonstrated that three isolates were gram positive and rod shaped. All other isolates were gram negative. The presence of bacteria was also estimated in ten different varieties of rice. The highest presence of bacteria was observed in KSK-133, Kainat and Stg 567989. Burkholderia species and Enterobacter species have high frequency almost in all tested rice varieties. The overall objective of this study was to screen, classify and associate the bacterial species present on the basis of various morphological characteristics isolated from diverse rice genotype. The results demonstrated that collected and investigated rice varieties have a diverse range of bacterial species, some of which are considered as severe pathogens for plants. [ABSTRACT FROM AUTHOR]
- Published
- 2016
15. CHARACTERIZATION OF GROWTH PROMOTING RHIZOBACTERIA OF LEGUMINOUS PLANTS.
- Author
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Ali, Amna, Bashir, Uzma, Akhtar, Naureen, and Haider, Muhammad S.
- Subjects
RHIZOBACTERIA ,LEGUMES ,ENTEROBACTER - Abstract
The present investigation deals with the morphological and biochemical identification of rhizobacteria having plant growth promoting characteristics, with a focus on the family Papilionaceae, whose representatives are widespread in nature as leguminous crops. Eleven bacterial strains were isolated from the rhizoplane of pea (Pisum sativum L.), chickpeas (Cicer arietinum L.) and clover (Trifolium pretense L.). The media used to isolate the rhizosphere bacteria were Luria Bertani (LB) agar and Nutrient agar (NA). Rhizosphere bacteria were identifiedbased on different characteristic i.e. phenotypic and biochemical characters. The isolated strains were characterized and assigned to various genera and species, such as Enterobacter aerogenes, Aureobacterium flavescens, Pseudomonas fluorescens, Kurthiasp., Acidovorax facilis, Bordetella pertussis, Corynebacterium sp., Bacillus sp., Curtobacterium albidum and Microbacterium lacticum. All identified species are given FCBP accession numbers and were stored for further use. [ABSTRACT FROM AUTHOR]
- Published
- 2016
16. Water productivity, yield and agronomic attributes of maize crop in response to varied irrigation levels and biochar--compost application.
- Author
-
Zahra, Misbah B., Afta, Zill-E.-Huma, and Haider, Muhammad S.
- Subjects
BIOCHAR ,IRRIGATION ,SOIL amendments ,SUSTAINABLE agriculture ,WATER efficiency - Abstract
BACKGROUND: Due to the rapid increase in world population, the demand for freshwater is increasing day by day. There is also immense pressure on the agriculture sector to produce more food with limited supplies of water. About 75% of freshwater is used in crop production out of which 63% is lost due to poor farm practices and evapotranspiration. Enhancement of crop water productivity for sustainable agriculture production especially in areas having water scarcity plausibly contributes towards the solution of water scarcity. RESULTS: The combined application of biochar and compost has a highly significant impact on maize yield with increased grain production, i.e. 6.44 and 6.52 t ha
-1 at 60% irrigation level with combined application of biochar and compost as compared with control at 6.39 and 6.44 t ha-1 at 100% irrigation level in autumn and spring seasons, respectively, by saving 40% of water. Furthermore, the highest value of water productivity (1.51 and 1.16 kg m-3 ) was achieved at 60% irrigation level with combined application of soil amendments. Also, cost--benefit analysis has shown highest values of net benefit with soil organic amendments. CONCLUSIONS: It is concluded that addition of biochar and compost to soil has the potential to increase crop yield and growth even at low irrigation levels by enhancing water use efficiency. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
17. CHARACTERIZATION OF CONDUCIVE ENVIRONMENTAL CONDITIONS FOR MUNGBEAN YELLOW MOSAIC VIRUSDISEASE INCIDENCE ON MUNGBEAN GERMPLASM.
- Author
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Ali, Safdar, Khan, Muhammad A., Zeshan, Muhammad A., Habib, Amer, and Haider, Muhammad S.
- Subjects
MUNG bean ,VIRUS diseases of plants ,PLANT epidemiology ,AGRICULTURAL climatology ,PLANT disease research - Abstract
Conducive environmental conditions for the development of Mungbean yellow mosaic virus (MYMV) diseasewere characterized. Correlation of environmental conditions (maximum and minimum air temperature, relative humidity, rainfall, clouds and windvelocity) with MYMV disease incidence was determined on twenty varieties/lines of mungbean. It was revealed that maximum temperature had significantly negative correlation with the disease incidence. The disease incidence increasedwith the decrease of minimum temperature.Minimum temperature and wind velocity had non-significant correlation with MYMV disease incidence. It was also found that relative humidity and rainfall had significant correlation with Mungbean yellow mosaic virusdisease incidence. [ABSTRACT FROM AUTHOR]
- Published
- 2015
18. BIO-CONTROL EFFECT OF ERUCA SATIVA MILL. OIL AGAINST THE HAZARDOUS FOOD BORNE PATHOGENS.
- Author
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Ali, Amna, Bashir, Uzma, and Haider, Muhammad S.
- Subjects
THERAPEUTIC use of plant extracts ,FOODBORNE diseases ,COMMUNICABLE disease treatment ,ANTIFUNGAL agents ,ANTI-infective agents ,PHYSIOLOGICAL control systems ,THERAPEUTICS - Abstract
Antimicrobial activity of Eruca sativa Mill. oil was evaluated against phytopathogenic bacterial species (Xenorhabdus luminescens, Acinetobacter sp., Bordetella pertussis, Ensifer adhaerens, Pseudomonas syringae, Acidovorax temperans, Xanthomonas axonopodis) and fungal species (Alternaria alternata, Dreschlera halodes, Aspergillus nidulans, Acremoniun kiliense, Fusarium oxysporum, Curvularia clavata, Rhizopus oryzae). Antifungal activity was determined on MEA while antibacterial activity on NA media plates to measure the effects of oil. The antimicrobial activity was tested by well diffusion method in vitro. E. sativa oil was found to be highly active against all fungal isolates tested as compared to bacterial isolates. Results showed evidence of high antibacterial activity against X. luminescens with inhibition zone of 3.1 cm. E. adhaerens and A. temperans exhibited least resistance against oil with 1.4 cm and 1.7 cm zone of inhibition respectively. The oil showed high antifungal activity in the range of 6.0-6.8cm inhibition zone against D. halodes, C. clavata, R. oryzae and A. nidulans whereas least active against F. oxysporum with 1.1cmzone of inhibition. The antimicrobial components from this oil can be used as an alternative to develop novel pesticides by replacing some chemical commercial antifungal and antibacterial for the plant diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2014
19. PHENOTYPIC IDENTIFICATION AND BIOCHEMICAL STUDIES OF BACTERIA ASSOCIATED WITH RHIZOSPHERIC SOIL OF GINGER (ZINGIBER OFFICINALE L.).
- Author
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Bashir, Uzma, Ali, Amna, Akhtar, Naureen, and Haider, Muhammad S.
- Subjects
BACTERIAL physiology ,PHENOTYPES ,BIOCHEMICAL research ,GINGER ,RHIZOSPHERE microbiology ,SOIL microbiology ,THERAPEUTICS - Abstract
Zingiber officinale L. is a common condiment for various foods and a long history of important traditional Medicine herb for the treatment of ailments and body disorders. Soil microorganisms are very important as almost every chemical transformation taking place in soil involves active contributions from soil microorganisms. In contrast, other soil microorganisms are pathogenic to plants and may cause considerable damage to crops. Large numbers of pathogenic microorganisms are routinely found in the soil and many can infect the plant through the roots. Through the current study describes the ginger rhizome associated soilborn bacterial strains. Rhizosphere bacteria were isolated from soil around the root zones of ginger fields. This study reports results concerning the isolation and identification of bacteria on the morphological basis and biochemical analysis. Ten species of bacteria belonging to eight different genera viz., Acidovorax temperans, Arthrobacter sp., Burkholderia pseudomallei, B. cepacia , Aeromonas hydrophila, A. veronii, Cupria-viridis sp., Bacillus sp., Flavobacterium odoratum, Oscillospira sp. were isolated and processed for identification by their enzymatic activity and carbohydrates utilization. [ABSTRACT FROM AUTHOR]
- Published
- 2014
20. Biochemical attributes of dates at three maturation stages.
- Author
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Haider, Muhammad S., Khan, Iqrar A., Jaskani, Muhammad J., Naqvi, Summar A., and Khan, Muhammad M.
- Subjects
- *
BIOMARKERS , *DATE palm , *PLANT growth , *FRUIT development , *ANTIOXIDANTS - Abstract
The date fruit is a primary component of the human diet in many countries with arid and semiarid climates. The present study reflects the relationship of different biochemical attributes with progressive date fruit developmental stages. The study involved eight date palm (Phoenix dactylifera L.) cultivars from Pakistan examined at three different edible stages of dates (khalal, rutab and tamar). The antiradical efficiency (2.14- 0.36), antioxidant enzymes (catalase and peroxidase), total phenolic contents (468.99-108 mg GAE/100g, FW) and the soluble protein contents (5.73-2.75 g/100g) were higher in higher at khalal and thereafter, but declined at fully ripened (tamar) stage. Moreover, glucose (16.92-31.66%) and fructose (15.25-30.58%) have lower quantity at khalal and higher quantity at tamar stage, whereas non-reducing (sucrose) sugars were present only at khalal and rutab stage fruits. Makran and Chohara cultivars revealed best overall values in examined compounds. Our results revealed that variation in different biochemical attributes is mainly depended on the difference in fruit maturity stage and cultivar. Cultivars exhibiting high values of beneficial biochemical attributes may be considered for the expansion of date palm cultivation. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
21. EFFECT OF CULTURE FILTRATES OF TRICHODERMA SPP. ON SEED GERMINATION AND SEEDLING GROWTH IN CHICKPEA - AN IN-VITRO STUDY.
- Author
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Ali, Amna, Haider, Muhammad S., and Ashfaq, Muhammad
- Subjects
- *
TRICHODERMA , *GERMINATION , *CHICKPEA ,SEEDLING roots - Abstract
Trichoderma species are known to produce a number of metabolites that play important role in plant growth, survival and also to enhance defence mechanism of their hosts against certain pathogens. This study was conducted to investigate the effect of Trichoderma spp. on the growth activity in chickpea seedlings. Germination percentage of chickpea seeds was enhanced by some Trichoderma species culture extracts, the most active stimulators of seed germination were T. harzianum, T. viride and T. koningii extracts. Results revealed that the maximum seedling root length was obtained by T. harzianum followed by T. viride and T. koningii. However, some species produced extracts that were detrimental to germination and plant growth. The lowest root growth was attained from T. reesei and T. aureoviride among other Trichoderma filtrate treatments. The greatest seedling shoot length was observed with T. harzianum and T. viride followed by T. koningii and T. pseudokoningii while other Trichoderma cultural filtrates significantly suppressed the shoot length as compare to control value (P < 0.05). Fresh and dry weight and of chickpea seedling was also significantly higher in Trichoderma treatments as compared to control (P < 0.05). However, in T. reesei and T. aureoviride treatment, fresh and dry weight of seedling was considerably lower where as T. harzianum, T. viride and T. koningii had higher values for seedling dry matter. Results revealed that Trichoderma species are effective for growth parameters and can be used to further investigations and raise the yield of chickpea and other cereal crops. [ABSTRACT FROM AUTHOR]
- Published
- 2014
22. EVALUATION OF DIFFERENT SUGAR BEET VARIETIES AGAINST FUSARIUM OXYSPORUM F. SP. BETAE AND ALTERNARIA ALTERNATA.
- Author
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Abbas, Hafiz M. K., Farooq, Muhammad A., Atta, Sagheer, Subhani, Muhammad N., Haider, Muhammad S., and Ali, Sajid
- Subjects
CULTIVARS ,DISEASE resistance of plants ,SUGAR beets ,FUSARIUM oxysporum ,ALTERNARIA alternata ,SUGAR crops ,LEAF spots treatment - Abstract
Twelve different sugar beet varieties were used to evaluate resistance against Fusarium oxysporum f. sp. betae and Alternaria alternata at Sugar Crops Research Program, NARC, Islamabad during 2012. In case of F. oxysporum only one variety (SD-PAK-01/07) was found moderately resistant, two moderately susceptible (SD-PAK-03/06 and EB-0809), seven susceptible (SD-PAK-04/06, SD-PAK-07/07, SD-12970, EB-0618, EB-0726, Sandrina and Ernestina) and two (SD-PAK-09/07 and California) were found highly susceptible. While in case of A. alternata leaf spots, only two varieties were found moderately resistant (California and Ernestina), three moderately susceptible (SD-PAK-01/07, SD-PAK-09/07 and EB-0809), three susceptible (SD-PAK-04/06, EB-0618 and Sandrina) and four (SD PAK-03/06, SDPAK- 07/07, S-12970 and EB-0726) were found highly susceptible. [ABSTRACT FROM AUTHOR]
- Published
- 2014
23. Hyperkalemia Causing Inappropriate Subcutaneous Implantable Cardioverter Defibrillator Shocks in a Patient with End-Stage Renal Disease: A Case Report and Literature Review.
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Botrus B, Mahtani AU, Isber R, Haider MS, and Isber N
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Subcutaneous implantable cardioverter-defibrillators (S-ICD) provide an effective treatment option for ventricular arrhythmias. When compared to transvenous implantable cardioverter-defibrillators (TV-ICDs), S-ICDs have a lower infection rate but a higher rate of inappropriate shocks. In patients with end-stage renal disease (ESRD), significant electrolyte disturbances are commonly seen, such as hyperkalemia, which can cause an increase in T wave amplitude. We present a patient with ESRD on hemodialysis who experienced inappropriate shocks from an S-ICD during sinus rhythm due to hyperkalemia-induced T wave oversensing and highlight related cases in the current literature., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2022, Botrus et al.)
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- 2022
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24. Cryptococcal Pneumonia in an Immunocompetent Patient: A Rare Occurrence.
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Haider MS, Master M, Mahtani A, Guzzo E, and Khalil A
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Cryptococcosis is an invasive yeast infection commonly found among immunosuppressed patients. Pulmonary cryptococcal infection can have variable presentations ranging from pulmonary nodules and masses to consolidation. A patient can present with shortness of breath, cough, sputum production, chest pain, fatigue, and weight loss. Diagnosis can be made using fungal culture, histology, radiographic findings, and cryptococcal antigen in serum as well as in the cerebrospinal fluid. Treatment is usually with a combination or a single antifungal agent. Few cases have been reported in immunocompetent individuals. Here we present a case of 69-year-old immunocompetent individual, who was initially seen in the outpatient clinic for dyspnea, cough, and fatigue and was treated for pneumonia. The patient remained symptomatic despite multiple courses of oral antibiotics. He was then sent for inpatient admission. CT scan was obtained that showed patchy infiltrates and consolidations, followed by bronchoscopy. The cytology confirmed adenocarcinoma. The fungal smear and culture grew Cryptococcus neoformans . The patient was treated with fluconazole with improvement of his symptoms before starting chemotherapy. We are reporting this case as clinicians usually focus on bacterial etiologies in outpatient setting. Our patient, who was immunocompetent, had a new diagnosis of cryptococcal pneumonia and was also found to have lung adenocarcinoma. This case highlights the rare occurrence of this type of pneumonia in immunocompetent patients and the importance of considering fungal causes of pneumonia in patients., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2022, Haider et al.)
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- 2022
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25. Superior Vena Cava Syndrome Due to Thrombosis: A Case Report.
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Haider MS, Master MF, Atluri S, and Nfonoyim J
- Abstract
Superior vena cava (SVC) syndrome is a clinical entity with signs and symptoms resulting from obstruction of blood flow through the SVC. The resulting obstruction leads to edema in the upper body, including the head, neck, and upper extremities. Clinical signs and symptoms can include plethora, cyanosis, dyspnea, stridor, cough, and hoarseness, as well as more serious complications such as cerebral edema leading to headache, confusion, and coma. Here, we present an interesting case of a 66-year-old female, with a medical history of esophageal cancer in remission and thyroid cancer currently undergoing radiation therapy, who was admitted for facial and upper extremity swelling. The initial impression was of angioedema or an allergic reaction. Imaging studies showed thrombus in the SVC resulting in SVC syndrome. The patient was treated with heparin initially, with a plan for an interventional radiologist to perform catheter-guided thrombolysis. However, the patient became unstable and ended up requiring mechanical ventilation. The patient was eventually discharged on oral anticoagulants. This case was rare as the patient developed SVC syndrome from venous thrombosis in the absence of any external tumor compression or as a result of an intravascular catheter., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2022, Haider et al.)
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- 2022
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26. Autoimmune Progesterone Dermatitis.
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Irshad S, Haider MS, Master MF, Asif N, and Khalil A
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The condition autoimmune progesterone dermatitis (APD) is an immune disorder, observed among women, primarily due to progesterone surge during menstrual cycle. Here, we present a case of a 29-year-old female with recurrent severe skin eruptions associated with her menstrual cycle that commenced a few years ago. She presented with blistered skin lesion of the body and also blisters in oropharyngeal mucosa leading to a variety of symptoms ranging from pruritus to difficulty in swallowing. Recognition of this process is important as it can result in significant debility among women. Our patient was treated with steroids and antihistamines to provide symptomatic relief and was encouraged to resume her oral contraceptive pill, which is a more definitive therapy., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2021, Irshad et al.)
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- 2021
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27. Demographics, Biochemical Characteristics, and Phases of Chronic Hepatitis B Virus Infection: Retrospective Analysis From a Secondary Care Setup.
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Ali Khan M, Haider MS, Nusrat B, Abbas Razvi SK, Shah ZZ, Shah AM, Khalid T, and Haleem F
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Introduction Hepatitis B virus (HBV) is the leading cause of cirrhosis in the developing world. Despite the development of effective vaccine(s) and direct-acting antivirals (DAAs) such as tenofovir and entecavir, the eradication of chronic HBV remains a distant dream in endemic regions. Factors such as treatment naivety, longer duration of disease, late diagnosis, family history of liver disorders and hepatocellular carcinoma, fatty liver disease, multiple comorbidities, alcoholism, use of tobacco products, noncompliance to drugs, and loss to follow-up all contribute to disease progression and development of complications. In order to promote a better understanding of the treatment initiation, duration, and eventual outcomes, the European Association for the Study of the Liver (EASL) updated its guidelines in 2017 and introduced a new staging system for chronic HBV. Since these guidelines are relatively recent, data regarding the new staging is virtually absent in local/regional settings. Moreover, it has been observed that patients presenting to secondary care setups at major urban centers have disease characteristics quite distinct from those of their rural counterparts or patients presenting to tertiary care setups, even in the same cities. Additionally, there is scarce published data with regard to this aspect. With this study, we hope to make progress on all of those fronts. Objective We aimed to evaluate the demographics, biochemical characteristics, and phases of chronic HBV at the secondary care level. Methods This was a retrospective observational cohort conducted at the Sindh Government Hospital, Liaquatabad from January to December 2020. Patients of either gender who were aged ≥12 years, and diagnosed as a case of chronic HBV were eligible to be enrolled in the study. Only treatment-naive patients were enrolled in the study. Demographics, biochemical characteristics, and phases of HBV (in light of the updated guidelines issued by EASL in 2017 with respect to HBV) were recorded and analyzed. Patient confidentiality was ensured at all times. Results A total of 102 patients were enrolled in the study. The mean age of our cohort was 34.31 ±12.42 years, and the male-to-female ratio was 3:2. All referrals were made from within the city district. Housewives and laborers made up the majority of our patients. The mean alanine transaminase (ALT) levels were 39.83 ±21.33 IU/L; otherwise, the biochemical profile of the patients was unremarkable. Phase III was the most frequently recorded stage of chronic HBV; 41 (40.19%) of the patients were diagnosed with it. However, nearly half of the patients had chronic active hepatitis (phases II and IV). Only a single case each of hepatitis Delta virus and decompensated liver disease (DCLD) was recorded. Conclusions All patients of chronic HBV presenting at the secondary care level were referred locally, were relatively older, and exhibited a higher frequency of chronic active hepatitis (phases II and IV). This corresponded to borderline elevations of ALT. But the remainder of the biochemical profile was largely unremarkable due to the very low prevalence of cirrhosis among these patients., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2021, Ali Khan et al.)
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- 2021
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