40 results on '"Guo, Yinping"'
Search Results
2. The clock in growing hyphae and their synchronization in Neurospora crassa
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Cheong, Jia Hwei, Qiu, Xiao, Liu, Yang, Krach, Emily, Guo, Yinping, Bhusal, Shishir, Schüttler, Heinz-Bernd, Arnold, Jonathan, and Mao, Leidong
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- 2024
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3. Computer vision models enable mixed linear modeling to predict arbuscular mycorrhizal fungal colonization using fungal morphology
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Zhang, Shufan, Wu, Yue, Skaro, Michael, Cheong, Jia-Hwei, Bouffier-Landrum, Amanda, Torrres, Isaac, Guo, Yinping, Stupp, Lauren, Lincoln, Brooke, Prestel, Anna, Felt, Camryn, Spann, Sedona, Mandal, Abhyuday, Johnson, Nancy, and Arnold, Jonathan
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- 2024
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4. Comparative study of the effects of different surface-coated silver nanoparticles on thyroid disruption and bioaccumulation in zebrafish early life
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Cao, Huihui, Guo, Yinping, Ma, Chaofan, Wang, Yang, Jing, Yuan, Chen, Xiaolei, and Liang, Hongwu
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- 2024
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5. Elevated RANTES levels are associated with increased risk of cerebral atherosclerotic stenosis
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Guo, Yinping, Kong, Qianqian, Zhang, Yi, Zhao, Jing, Yu, Zhiyuan, He, Dan, Huang, Hao, and Luo, Xiang
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- 2023
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6. Changes in Maillard reaction products, volatile substances and active proteins of goat milk under different heat treatments
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Guo, Yinping, Li, Hongjuan, Zhao, Xiaoxuan, Zhang, Yumeng, Pang, Xiaoyang, Xie, Ning, Wang, Yunna, Yu, Jinghua, Lv, Jiaping, and Zhang, Shuwen
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- 2023
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7. Discovery of a potent, selective and cell active inhibitor of m6A demethylase ALKBH5
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Fang, Zhen, Mu, Bo, Liu, Yang, Guo, Nihong, Xiong, Liang, Guo, Yinping, Xia, Anjie, Zhang, Rong, Zhang, Hailin, Yao, Rui, Fan, Yan, Li, Linli, Yang, Shengyong, and Xiang, Rong
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- 2022
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8. Structural Optimization and Structure–Activity Relationship of 1H‑Pyrazole-4-carboxylic Acid Derivatives as DNA 6mA Demethylase ALKBH1 Inhibitors and Their Antigastric Cancer Activity.
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Li, Feng, Xiong, Liang, Zhang, Jian, Guo, Yinping, Xu, Ke, Xiong, Zijie, Wang, Yuyang, Ji, Shanmian, Tong, Aiping, Li, Linli, and Yang, Shengyong
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- 2024
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9. Gene activation via Cre/lox-mediated excision in cowpea (Vigna unguiculata)
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Zhang, Zhifen, Guo, Yinping, Marasigan, Kathleen Monfero, Conner, Joann A., and Ozias-Akins, Peggy
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- 2022
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10. Triglyceride glucose index influences platelet reactivity in acute ischemic stroke patients
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Guo, Yinping, Zhao, Jing, Zhang, Yi, Wu, Lingshan, Yu, Zhiyuan, He, Dan, Huang, Hao, Qu, Wensheng, and Luo, Xiang
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- 2021
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11. Corrigendum to “Discovery of a potent, selective and cell active inhibitor of m6A demethylase ALKBH5” [Eur. J. Med. Chem. 238 (2022) 114446]
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Fang, Zhen, Mu, Bo, Liu, Yang, Guo, Nihong, Xiong, Liang, Guo, Yinping, Xia, Anjie, Zhang, Rong, Zhang, Hailin, Yao, Rui, Fan, Yan, Li, Linli, Yang, Shengyong, and Xiang, Rong
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- 2023
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12. Discovery of 6,7-dihydro-5H-pyrrolo[3,4-d] pyrimidine derivatives as a new class of ATR inhibitors
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Chen, Pei, Bin, Huachao, Jiao, Yan, Lin, Guifeng, Zhang, Yun, Xia, Anjie, Pan, Zhilin, Qiao, Jingxin, Guo, Yinping, Liu, Jingming, Zhou, Yangli, and Li, Linli
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- 2022
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13. Impact of Inclusive Leadership on Innovative Work Behavior: The Mediating Role of Job Crafting.
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Guo, Yinping, Jin, Junge, and Yim, Sang-Hyuk
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INCLUSIVE leadership ,JOB performance ,STRUCTURAL equation modeling ,EMPLOYEE motivation - Abstract
The study aims to examine the mediating role of job crafting between inclusive leadership and innovative work behavior. The data were collected from 314 workers employed in China's small and medium-sized industries. The data collection was done through survey design. The data analysis was done using Spss 26.0 and through structural equation modeling by Mplus 8. Inclusive leadership was found to be related to job crafting and innovative work behavior of the employees. Job crafting was found to be mediating between inclusive leadership and innovative work behavior. The study delineated the link mechanism between inclusive leadership and innovative work behavior. Studying inclusive leadership in the context of Chinese culture is a powerful complement to inclusive leadership theory. This paper provides the managers of SMEs with significant managerial insights into how inclusive leadership can effectively motivate employees' innovative work behaviors. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Elevated Plasma Oligomeric Amyloid β-42 Is Associated with Cognitive Impairments in Cerebral Small Vessel Disease.
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Qu, Wensheng, Zhang, Liding, Liang, Xiaohan, Yu, Zhiyuan, Huang, Hao, Zhao, Jing, Guo, Yinping, Zhou, Xirui, Xu, Shabei, Luo, Haiming, and Luo, Xiang
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CEREBRAL small vessel diseases ,COGNITION disorders ,AMYLOID ,MAGNETIC resonance imaging ,OLIGOMERS ,WHITE matter (Nerve tissue) - Abstract
Due to the heterogeneity of amyloid β-42 (Aβ
42 ) species, the potential correlation between plasma oligomeric Aβ42 (oAβ42 ) and cognitive impairments in cerebral small vessel disease (CSVD) remains unclear. Herein, a sandwich ELISA for the specific detection of Aβ42 oligomers (oAβ42 ) and total Aβ42 (tAβ42 ) was developed based on sequence- and conformation-specific antibody pairs for the evaluation of plasma samples from a Chinese CSVD community cohort. After age and gender matching, 3-Tesla magnetic resonance imaging and multidimensional cognitive assessment were conducted in 134 CSVD patients and equal controls. The results showed that plasma tAβ42 and oAβ42 levels were significantly elevated in CSVD patients. By regression analysis, these elevations were correlated with the presence of CSVD and its imaging markers (i.e., white matter hyperintensities). Plasma Aβ42 tests further strengthened the predictive power of vascular risk factors for the presence of CSVD. Relative to tAβ42 , oAβ42 showed a closer correlation with memory domains evaluated by neuropsychological tests. In conclusion, this sensitive ELISA protocol facilitated the detection of plasma Aβ42 ; Aβ42 , especially its oligomeric form, can serve as a biosensor for the presence of CSVD and associated cognitive impairments represented by memory domains. [ABSTRACT FROM AUTHOR]- Published
- 2023
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15. Effect of Cerebral Small Vessel Disease Burden on Outcomes in Patients With Acute Ischemic Stroke Receiving Endovascular Treatment.
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Huang, Hao, Zong, Weifeng, Tong, Xu, Tian, Xue, Wang, Anxin, Jia, Baixue, Zhao, Jing, Wu, Lingshan, Zhou, Xirui, Guo, Yinping, Zhang, Yi, Yu, Zhiyuan, Wang, Yilong, Wang, Yongjun, Luo, Xiang, and Miao, Zhongrong
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CEREBRAL small vessel diseases ,CONFIDENCE intervals ,ISCHEMIC stroke ,FUNCTIONAL status ,HEALTH outcome assessment ,MAGNETIC resonance imaging ,DESCRIPTIVE statistics ,RESEARCH funding ,ENDOVASCULAR surgery ,ODDS ratio ,LONGITUDINAL method ,DISEASE risk factors - Abstract
Background: Cerebral small vessel disease (SVD) is common in the aging population. The study aimed to evaluate the effect of SVD on functional outcomes in patients with acute ischemic stroke (AIS) receiving endovascular treatment (EVT). Methods: From a prospective registry, we selected patients with AIS receiving EVT. SVD features, including white matter hyperintensities (WMH), lacunes and brain atrophy, were assessed on MRI and a validated SVD score was calculated to reflect the total SVD burden. Results: Among 137 patients included, 106 had none-mild SVD burden and 31 had moderate-severe SVD burden. The moderate-severe SVD burden group showed a significantly higher modified Rankin Scale score at 90 d (median, 4 versus 1 points, adjusted common odds ratio 0.32 [95% CI, 0.14–0.69], P < 0.01) and a significantly smaller improvement of NIHSS at 24 h (median, –3 versus –3 points, adjusted β coefficient 4.02 [95% CI, 0.57–7.48], P = 0.02) and 7 days (median, –4 versus –6 points, adjusted β coefficient 4.71 [95% CI, 1.06–8.36], P = 0.01) than the none-mild group. There was no significant difference in successful recanalization, death within 90 days, symptomatic intracranial hemorrhage within 24 h between two groups (all P > 0.05). Additionally, for each single SVD feature, brain atrophy and WMH, but not lacunes, were associated with the functional outcome. Conclusion: Moderate-severe SVD burden was associated with poor early and late functional outcomes in patients with AIS receiving EVT. Our results suggest that SVD score may act as a good predictor of outcomes in these patients. [ABSTRACT FROM AUTHOR]
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- 2022
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16. Impact of Diabetes on Platelet Function in Acute Ischemic Stroke Patients Taking Dual Antiplatelet Therapy.
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Guo, Yinping, Zhang, Yi, Zhao, Jing, Wu, Lingshan, Yu, Zhiyuan, He, Dan, Huang, Hao, and Luo, Xiang
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STROKE patients ,PLATELET aggregation inhibitors ,ISCHEMIC stroke ,BLOOD platelets ,ADENOSINE diphosphate - Abstract
Objectives: Diabetes mellitus (DM) is a significant risk factor for ischemic stroke and associated with platelet reactivity. We aim to evaluate the effect of DM on platelet function in acute ischemic stroke patients taking dual antiplatelet therapy (DAPT). Methods: We consecutively included patients with acute ischemic stroke taking DAPT. Platelet function was assessed by thromboelastography and the arachidonic acid (AA) or adenosine diphosphate (ADP) induced platelet inhibition rate were used to confirmed the high-residual on-treatment platelet reactivity (HRPR) to aspirin or clopidogrel. We classified patients into DM and non-DM groups. The association between DM and platelet function was assessed and the confounding factors were adjusted by propensity score matching (PSM) analysis. The independent risk factors of HRPR were determined by multivariate logistic regression analysis. Results: A total of 1,071 acute ischemic stroke patients, 712 in the non-DM group and 359 in the DM group, were included. Patients with DM had a significantly higher maximum amplitude (63.0 vs. 62.0 mm, P < 0.01), ADP-induced clot strength (34.6 vs. 30.3 mm, P < 0.01) and clopidogrel HRPR rate (22.6% vs. 17.3%, P = 0.038) than those without DM. Among 662 patients after PSM, the maximum amplitude (63.1 vs. 62.5 mm, P = 0.032), ADP-induced clot strength (34.6 vs. 29.3 mm, P < 0.01) and clopidogrel HRPR rate (23.0% vs. 15.7%, P = 0.018) is still higher in the DM group. DM was an independent factor of clopidogrel HRPR (OR = 1.48, 95% CI: 1.03–2.07, P < 0.05). Conclusions: In acute ischemic stroke patients taking DAPT, DM is associated with increased platelet reactivity and higher prevalence of clopidogrel HRPR. [ABSTRACT FROM AUTHOR]
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- 2021
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17. Sleep Quality Mediates the Association Between Cerebral Small Vessel Disease Burden and Frailty: A Community-Based Study.
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Zhao, Jing, Qu, Wensheng, Zhou, Xirui, Guo, Yinping, Zhang, Yi, Wu, Lingshan, Yu, Zhiyuan, Huang, Hao, and Luo, Xiang
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CEREBRAL small vessel diseases ,FRAILTY ,OLDER people ,SLEEP quality - Abstract
Background: Physical frailty is a common problem among older adults which usually leads to adverse health outcomes. The imaging markers of cerebral small vessel disease (CSVD) are associated with frailty, but the underlying mechanisms remain unclear. The present study aimed to investigate the mediating role of sleep quality in the relationship between CSVD burden and frailty. Methods: We performed a cross-sectional study and enrolled community residents. Frailty and sleep quality were measured using the Fried frailty phenotype and the Pittsburgh Sleep Quality Index (PSQI), respectively. A multivariate linear regression analysis and a Bootstrap analysis were performed to examine the association among the key variables and the mediating role of sleep quality. Results: Of the 726 participants (mean age: 65.5 ± 6.5 years, 59.8% female), the numbers (percentages) of the frail, prefrail, and robust residents were 49 (6.7%), 310 (42.7%), and 367 (50.6%), respectively. After adjusting for covariates, the CSVD burden and PSQI score were significantly associated with the frailty score. In addition, sleep quality played a partial mediating role in the association between CSVD burden and physical frailty. The mediating effect was 21.9%. Conclusion: The present study suggests that sleep quality is a mediator of this association between CSVD and frailty in community-dwelling older adults. Improving sleep quality might be helpful to mitigate the risk of frailty in CSVD patients. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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18. Treatment of the Carotid In-stent Restenosis: A Systematic Review.
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Huang, Hao, Wu, Lingshan, Guo, Yinping, Zhang, Yi, Zhao, Jing, Yu, Zhiyuan, and Luo, Xiang
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EXTERNAL beam radiotherapy ,CAROTID endarterectomy ,CAROTID artery ,TRANSIENT ischemic attack ,STROKE ,DRUG-eluting stents ,TRANSLUMINAL angioplasty ,POSTOPERATIVE period - Abstract
Background and Purpose: In-stent restenosis (ISR) after carotid artery stent (CAS) is not uncommon. We aimed to evaluate therapeutic options for ISR after CAS. Methods: We searched PubMed and EMBASE until November 2, 2020 for studies including the treatment for ISR after CAS. Results: In total, 35 studies, covering 1,374 procedures in 1,359 patients, were included in this review. Most cases (66.3%) were treated with repeat CAS (rCAS), followed by percutaneous transluminal angioplasty (PTA) (17.5%), carotid endarterectomy (CEA) (14.3%), carotid artery bypass (1.5%), and external beam radiotherapy (0.4%). The rates of stroke & TIA within the postoperative period were similar in three groups (PTA 1.1%, rCAS 1.1%, CEA 1.5%). CEA (2.5%) was associated with a slightly higher rate of postoperative death than rCAS (0.7%, P = 0.046). Furthermore, the rate of long-term stroke & TIA in PTA was 5.7%, significantly higher than rCAS (1.8%, P = 0.036). PTA (27.8%) was also associated with a significantly higher recurrent restenosis rate than rCAS (8.2%, P = 0.002) and CEA (1.6%, P < 0.001). The long-term stroke & TIA and recurrent restenosis rates showed no significant difference between rCAS and CEA. Conclusions: rCAS is the most common treatment for ISR, with low postoperative risk and low long-term risk. CEA is an important alternative for rCAS. PTA may be less recommended due to the relatively high long-term risks of stroke & TIA and recurrent restenosis. [ABSTRACT FROM AUTHOR]
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- 2021
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19. RNA-seq and microarray complement each other in transcriptome profiling
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Kogenaru Sunitha, Qing Yan, Guo Yinping, and Wang Nian
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RNA-seq ,Microarray ,Transcriptome profiling ,Pathogenic bacteria ,Virulence ,Type 3 secretion system ,Effectors ,HrpX ,Xanthomonas ,Citrus canker disease ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background RNA-seq and microarray are the two popular methods employed for genome-wide transcriptome profiling. Current comparison studies have shown that transcriptome quantified by these two methods correlated well. However, none of them have addressed if they complement each other, considering the strengths and the limitations inherent with them. The pivotal requirement to address this question is the knowledge of a well known data set. In this regard, HrpX regulome from pathogenic bacteria serves as an ideal choice as the target genes of HrpX transcription factor are well studied due to their central role in pathogenicity. Results We compared the performance of RNA-seq and microarray in their ability to detect known HrpX target genes by profiling the transcriptome from the wild-type and the hrpX mutant strains of γ-Proteobacterium Xanthomonas citri subsp. citri. Our comparative analysis indicated that gene expression levels quantified by RNA-seq and microarray well-correlated both at absolute as well as relative levels (Spearman correlation-coefficient, rs > 0.76). Further, the expression levels quantified by RNA-seq and microarray for the significantly differentially expressed genes (DEGs) also well-correlated with qRT-PCR based quantification (rs = 0.58 to 0.94). Finally, in addition to the 55 newly identified DEGs, 72% of the already known HrpX target genes were detected by both RNA-seq and microarray, while, the remaining 28% could only be detected by either one of the methods. Conclusions This study has significantly advanced our understanding of the regulome of the critical transcriptional factor HrpX. RNA-seq and microarray together provide a more comprehensive picture of HrpX regulome by uniquely identifying new DEGs. Our study demonstrated that RNA-seq and microarray complement each other in transcriptome profiling.
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- 2012
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20. Developing a rapid and highly efficient cowpea regeneration, transformation and genome editing system using embryonic axis explants.
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Che, Ping, Chang, Shujun, Simon, Marissa K., Zhang, Zhifen, Shaharyar, Ahmed, Ourada, Jesse, O'Neill, Dennis, Torres‐Mendoza, Mijael, Guo, Yinping, Marasigan, Kathleen M., Vielle‐Calzada, Jean‐Philippe, Ozias‐Akins, Peggy, Albertsen, Marc C., and Jones, Todd J.
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COWPEA ,GENOME editing ,TRANSGENIC plants ,COMMON bean ,CROPS ,SOYBEAN - Abstract
SUMMARY: Cowpea (Vigna unguiculata (L.) Walp.) is one of the most important legume crops planted worldwide, but despite decades of effort, cowpea transformation is still challenging due to inefficient Agrobacterium‐mediated transfer DNA delivery, transgenic selection and in vitro shoot regeneration. Here, we report a highly efficient transformation system using embryonic axis explants isolated from imbibed mature seeds. We found that removal of the shoot apical meristem from the explants stimulated direct multiple shoot organogenesis from the cotyledonary node tissue. The application of a previously reported ternary transformation vector system provided efficient Agrobacterium‐mediated gene delivery, while the utilization of spcN as selectable marker enabled more robust transgenic selection, plant recovery and transgenic plant generation without escapes and chimera formation. Transgenic cowpea plantlets developed exclusively from the cotyledonary nodes at frequencies of 4% to 37% across a wide range of cowpea genotypes. CRISPR/Cas‐mediated gene editing was successfully demonstrated. The transformation principles established here could also be applied to other legumes to increase transformation efficiencies. Significance Statement: The tissue culture and transformation technology developed herein represents a significant advance in Agrobacterium‐mediated transformation and CRISPR/Cas‐mediated genome editing of an important orphan crop, cowpea (Vigna unguiculata (L.) Walp.). The principles established in this study have the potential to improve the transformation and editing efficiencies not only for cowpea, but also for other legume species, such as soybean (Glycine max) and common bean (Phaseolus vulgaris). [ABSTRACT FROM AUTHOR]
- Published
- 2021
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21. Structure‐Guided Discovery of a Potent and Selective Cell‐Active Inhibitor of SETDB1 Tudor Domain.
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Guo, Yinping, Mao, Xin, Xiong, Liang, Xia, Anjie, You, Jing, Lin, Guifeng, Wu, Chengyong, Huang, Luyi, Wang, Yiwei, and Yang, Shengyong
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TUMOR suppressor genes , *SMALL molecules , *PROTEIN domains - Abstract
SET domain bifurcated protein 1 (SETDB1) is a histone lysine methyltransferase that promotes the silencing of some tumour suppressor genes and is overexpressed in many cancers. SETDB1 contains a unique tandem tudor domain (TTD) that recognizes histone H3 sequences containing both methylated and acetylated lysines. Beginning with the identification of a hit compound (Cpd1), we discovered the first potent and selective small molecule SETDB1‐TTD inhibitor (R,R)‐59 through stepwise structure‐guided optimization. (R,R)‐59 showed a KD value of 0.088±0.045 μM in the ITC assay. The high potency of (R,R)‐59 was well explained by the cocrystal structure of the (R,R)‐59‐TTD complex. (R,R)‐59 is an endogenous binder competitive inhibitor. Evidence has also demonstrated its cellular target engagement. Interestingly, the enantiomer (S,S)‐59 did not show activity in all the assays, highlighting the potential of (R,R)‐59 as a tool compound in exploring the biological functions of SETDB1‐TTD. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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22. Role of CsrA in stress responses and metabolism important for Salmonella virulence revealed by integrated transcriptomics.
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Potts, Anastasia H., Guo, Yinping, Ahmer, Brian M. M., and Romeo, Tony
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SALMONELLA , *MICROBIAL virulence , *NON-coding RNA , *MOTILITY of bacteria , *BIOFILMS - Abstract
To cause infection, Salmonella must survive and replicate in host niches that present dramatically different environmental conditions. This requires a flexible metabolism and physiology, responsive to conditions of the local milieu. The sequence specific RNA binding protein CsrA serves as a global regulator that governs gene expression required for pathogenicity, metabolism, biofilm formation, and motility in response to nutritional conditions. Its activity is determined by two noncoding small RNAs (sRNA), CsrB and CsrC, which sequester and antagonize this protein. Here, we used ribosome profiling and RNA-seq analysis to comprehensively examine the effects of CsrA on mRNA occupancy with ribosomes, a measure of translation, transcript stability, and the steady state levels of transcripts under in vitro SPI-1 inducing conditions, to simulate growth in the intestinal lumen, and under in vitro SPI-2-inducing conditions, to simulate growth in the Salmonella containing vacuole (SCV) of the macrophage. Our findings uncovered new roles for CsrA in controlling the expression of structural and regulatory genes involved in stress responses, metabolism, and virulence systems required for infection. We observed substantial variation in the CsrA regulon under the two growth conditions. In addition, CsrB/C sRNA levels were greatly reduced under the simulated intracellular conditions and were responsive to nutritional factors that distinguish the intracellular and luminal environments. Altogether, our results reveal CsrA to be a flexible regulator, which is inferred to be intimately involved in maintaining the distinct gene expression patterns associated with growth in the intestine and the macrophage. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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23. Clinical and infarction patterns of PFO‐related cryptogenic strokes and a prediction model.
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He, Dan, Shi, Qiang, Xu, Guangjing, Hu, Zheng, Li, Xuefei, Li, Qian, Guo, Yinping, Xu, Shabei, Lin, Yongbo, Yu, Zhiyuan, Wang, Wei, and Luo, Xiang
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STROKE patients ,INFARCTION ,HEART diseases ,PATHOLOGICAL physiology ,MEDICAL decision making ,MOLECULAR recognition - Abstract
Objectives: The higher than expected PFO rate in CS patients has raised concerns that paradoxical embolism maybe the pathophysiologic mechanism for strokes. However, only a small proportion of pathogenic PFOs cause CS. Therefore, accurate recognition of patients with pathogenic PFOs among all CS patients could guide clinical decision making in selecting the most appropriate treatment. The aim of this study was to devise a new algorithm to stratify cryptogenic stroke (CS) patients into pathogenic patent foramen ovale (p‐PFO)‐ and non‐p‐PFO‐related patients. Methods: A total of 1201 patients with acute ischemic stroke were recruited from two different medical centers, and 253 CS patients were identified. Of the 253 patients, 111 were diagnosed with PFO using contrast transcranial Doppler. Data on medical histories, neuroimaging and laboratory tests were compared in CS patients with or without PFO. Results: Compared with PFO‐negative CS patients, PFO‐positive CS patients showed younger onset age, lower incidence of hypertension and dyslipidemia, characteristic infarction pattern in magnetic resonance imaging and specifically altered platelet activity and coagulation function. Based on the above information, we constructed a PFO judgment formula (Hr‐PFOJ) by means of feature weight estimation and predictive performance evaluation to predict pathogenic PFO in CS patients with a sensitivity of 76.3% and a specificity of 66.5%. Interpretations: Hr‐PFOJ judgment formula is a useful screening tool for identification of patients with pathogenic PFO who may benefit from PFO‐related treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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24. Genomics of Xanthomonas citri and Related Species.
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Jalan, Neha, Yan, Qing, Kogenaru, Sunitha, Guo, Yinping, Jones, Jeffrey B., Graham, James H., and Wang, Nian
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- 2014
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25. Proposal to reclassify the Streptomyces albidoflavus clade on the basis of multilocus sequence analysis and DNA–DNA hybridization, and taxonomic elucidation of Streptomyces griseus subsp. solvifaciens.
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Rong, Xiaoying, Guo, Yinping, and Huang, Ying
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MOLECULAR phylogeny ,STREPTOMYCES griseus ,BACTERIAL genomes ,CLADISTIC analysis ,RNA ,NUCLEOTIDE sequence ,NUCLEIC acid hybridization ,PHENOTYPES - Abstract
Abstract: The Streptomyces albidoflavus 16S rRNA gene clade contains 10 species and subspecies with identical 16S rRNA gene sequences and very similar numerical taxonomic data, including Streptomyces griseus subsp. solvifaciens. Type strains of this clade, as well as three CGMCC strains which were received as Streptomyces galilaeus, Streptomyces sioyaensis and Streptomyces vinaceus, respectively, that shared the same 16S rRNA gene sequences with the clade, were subjected to multilocus sequence analysis (MLSA), DNA–DNA hybridization (DDH) and phenotypic characterization for a comprehensive reevaluation. The 13 strains still formed a distinct, albeit loosely related, clade in the phylogenetic tree based on concatenated sequences of aptD, gyrB, recA, rpoB and trpB genes, supported by a high bootstrap value and different tree-making algorithms, with MLSA evolutionary distances ranging from 0 to 0.003. DDH values among these strains were well above the 70% cut-off point for species delineation. Based on the genotypic data of MLSA and DDH, combined with key phenotypic properties in common, it is proposed that the 10 species and subspecies of the S. albidoflavus clade, namely S. albidoflavus, S. canescens, S. champavatii, S. coelicolor, S. felleus, S. globisporus subsp. caucasicus, S. griseus subsp. solvifaciens, S. limosus, S. odorifer and S. sampsonii, should be merged into a single genomic species, for which the name S. albidoflavus is retained, and that the three strains S. galilaeus CGMCC 4.1320, S. sioyaensis CGMCC 4.1306 and S. vinaceus CGMCC 4.1305 should be assigned to S. albidoflavus as well. The results also indicated that MLSA could be the procedure of choice for distinguishing between species within Streptomyces 16S rRNA gene clades. [Copyright &y& Elsevier]
- Published
- 2009
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26. Haploidy in Tobacco Induced by PsASGR-BBML Transgenes via Parthenogenesis.
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Zhang, Zhifen, Conner, Joann, Guo, Yinping, and Ozias-Akins, Peggy
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TRANSGENES ,PARTHENOGENESIS ,HETEROSIS ,HAPLOIDY ,TOBACCO ,APOMIXIS ,SELF-pollination - Abstract
Background: Engineering apomixis in sexually reproducing plants has been long desired because of the potential to fix hybrid vigor. Validating the functionality of genes originated from apomictic species that contribute to apomixis upon transfer to sexually reproducing species is an important step. The PsASGR-BABYBOOM-like (PsASGR-BBML) gene from Pennisetum squamulatum confers parthenogenesis in this apomict, and its functionality was demonstrated in several sexually reproducing monocots but not in any dicots. Methods: We introduced the PsASGR-BBML gene regulated by egg cell-specific promoters, either AtDD45 or AtRKD2, into tobacco, and analyzed progeny of the transgenic lines resulting from self-pollination and crossing by flow cytometry. Results: We identified haploid progeny at a frequency lower than 1% in the AtDD45
pro lines, while at a frequency of 9.3% for an octoploid (2n = 8x) AtRKD2pro line. Haploid production in the T2 generation, derived from the tetraploid T1 offspring of this original octoploid AtRKD2pro line, was also observed. Pollinated by homozygous transgenic tobacco carrying a DsRed marker gene, 4x progeny of the AtRKD2pro line yielded parthenogenetic embryos identified as DsRed negative. We verified that the DsRed negative seedlings recovered were haploid (2x). Conclusion: The PsASGR-BBML gene regulated by egg cell-specific promoters could enable parthenogenesis in tobacco, a dicotyledon species. [ABSTRACT FROM AUTHOR]- Published
- 2020
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27. Anesthesia for endovascular treatment in anterior circulation stroke: A systematic review and meta‐analysis.
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Li, Xuefei, Hu, Zheng, Li, Qian, Guo, Yinping, Xu, Shabei, Wang, Wei, He, Dan, and Luo, Xiang
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- 2019
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28. Discovery of selective BPTF bromodomain inhibitors by screening and structure-based optimization.
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Xiong, Liang, Mao, Xin, Guo, Yinping, Zhou, Yangli, Chen, Mingxin, Chen, Pei, Yang, Shengyong, and Li, Linli
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X-ray crystallography , *TRANSCRIPTION factors , *THERMAL batteries , *CHROMATIN - Abstract
Bromodomain and PHD finger containing transcription factor (BPTF) is a multidomain protein that regulates the transcription of chromatin and is related to many cancers. Herein, we report the screening-based discovery of Cpd1, a compound with micromolar affinity to the BPTF bromodomain. Through structure-guided optimization, we synthesized a variety of new inhibitors. Among these compounds, Cpd8 and Cpd10 were highly potent and selective inhibitors, with K D values of 428 nM and 655 nM in ITC assays, respectively. The high activity was explained by the cocrystal structure of Cpd8 in complex with the BPTF bromodomain protein. Cpd8 and Cpd10 were able to stabilize the BPTF bromodomain protein in cells in a cellular thermal shift assay (CETSA). Cpd8 downregulated c-MYC expression in A549 cells. All experiments prove that these two compounds are potential BPTF inhibitors. • Potent and selective inhibitors of BPTF bromodomain, Cpd8 and Cpd10 were described. • The binding mode of Cpd8 with the BPTF bromodomain was revealed by X-ray crystallography. • Cpd10 has good selectivity against BPTF among bromodomain proteins. • Cpd8 effectively suppresses c-MYC mRNA levels in A549 cells. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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29. Clinical and imaging characteristics of PFO‐related stroke with different amounts of right‐to‐left shunt.
- Author
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He, Dan, Li, Qian, Xu, Guangjin, Hu, Zheng, Li, Xuefei, Guo, Yinping, Xu, Shabei, Wang, Wei, and Luo, Xiang
- Published
- 2018
- Full Text
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30. Ubiquitination regulation of aerobic glycolysis in cancer.
- Author
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Xie, Yao, Wang, Mu, Xia, Min, Guo, Yinping, Zu, Xuyu, and Zhong, Jing
- Subjects
- *
GLYCOLYSIS , *UBIQUITINATION , *METABOLIC regulation , *CELLULAR signal transduction , *TRANSCRIPTION factors , *POST-translational modification - Abstract
Aerobic glycolysis, or the Warburg effect, is regarded as a critical part of metabolic reprogramming and plays a crucial role in the occurrence and development of tumours. Ubiquitination and deubiquitination, essential post-translational modifications, have attracted increasing attention with regards to the regulation of metabolic reprogramming in cancer. However, the mechanism of ubiquitination in glycolysis remains unclear. In this review, we discuss the roles of ubiquitination and deubiquitination in regulating glycolysis, and their involvement in regulating important signalling pathways, enzymes, and transcription factors. Focusing on potential mechanisms may provide novel strategies for cancer treatment. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2022
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31. Structural Optimization and Structure-Activity Relationship of 1 H -Pyrazole-4-carboxylic Acid Derivatives as DNA 6mA Demethylase ALKBH1 Inhibitors and Their Antigastric Cancer Activity.
- Author
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Li F, Xiong L, Zhang J, Guo Y, Xu K, Xiong Z, Wang Y, Ji S, Tong A, Li L, and Yang S
- Subjects
- Humans, Structure-Activity Relationship, Animals, Mice, Cell Line, Tumor, Carboxylic Acids chemistry, Carboxylic Acids pharmacology, Carboxylic Acids chemical synthesis, Cell Proliferation drug effects, Molecular Structure, Molecular Docking Simulation, Mice, Nude, Mice, Inbred BALB C, AlkB Homolog 1, Histone H2a Dioxygenase metabolism, Stomach Neoplasms drug therapy, Stomach Neoplasms pathology, Pyrazoles pharmacology, Pyrazoles chemistry, Pyrazoles chemical synthesis, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry, Antineoplastic Agents chemical synthesis, Enzyme Inhibitors pharmacology, Enzyme Inhibitors chemistry, Enzyme Inhibitors chemical synthesis
- Abstract
DNA N
6 -methyladenine (6mA) demethylase ALKBH1 plays an important role in various cellular processes. Dysregulation of ALKBH1 is associated with the development of some cancer types, including gastric cancer, implicating a potential therapeutic target. However, there is still a lack of potent ALKBH1 inhibitors. Herein, we report the discovery of a highly potent ALKBH1 inhibitor, 1 H -pyrazole-4-carboxylic acid derivative 29 . The structure-activity relationship of this series of compounds was also discussed. Because of the poor cell membrane permeability of 29 , we prepared a prodrug of 29 ( 29E ), which showed excellent cellular activities. In gastric cancer cell lines HGC27 and AGS, 29E treatment significantly increased the abundance of 6mA, inhibited cell viability, and upregulated the AMP-activated protein kinase (AMPK) signaling pathway. In addition, the hydrolysis product 29 showed high exposure in mice after administration of 29E . Collectively, this research provides a new potent ALKBH1 inhibitor, which could serve as a lead compound for subsequent drug development.- Published
- 2024
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32. Discovery of a Potent and Cell-Active Inhibitor of DNA 6mA Demethylase ALKBH1.
- Author
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Xiong L, Li F, Guo Y, Zhang J, Xu K, Xiong Z, Tong A, Li L, and Yang S
- Subjects
- DNA Methylation, DNA metabolism, Eukaryota metabolism
- Abstract
N
6 -Methyladenine (6mA) of DNA has emerged as a novel epigenetic mark in eukaryotes, and several 6mA effector proteins have been identified. However, efforts to selectively inhibit the biological functions of these effector proteins with small molecules are unsuccessful to date. Here we report the first potent and selective small molecule inhibitor ( 13h ) of AlkB homologue 1 (ALKBH1), the only validated 6mA demethylase. 13h showed an IC50 of 0.026 ± 0.013 μM and 1.39 ± 0.13 μM in the fluorescence polarization (FP) and enzyme activity assay, respectively, and a KD of 0.112 ± 0.017 μM in the isothermal titration calorimetry (ITC) assay. The potency of 13h was well explained by the cocrystal structure of the 13h -ALKBH1 complex. Furthermore, 13h displayed excellent selectivity for ALKBH1. In cells, compound 13h and its derivative 16 were able to engage ALKBH1 and modulate the 6mA levels. Collectively, our study identified the first potent, isoform selective, and cell-active ALKBH1 inhibitor, providing a tool compound for exploring the biological functions of ALKBH1 and DNA 6mA.- Published
- 2024
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33. Intracellular FGF1 promotes invasion and migration in thyroid carcinoma via HMGA1 independent of FGF receptors.
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Chen Z, Zhong X, Tang W, Xia M, Liu C, Guo Y, Yi Y, Jiang Q, Zu X, and Zhong J
- Abstract
Background: Fibroblast growth factor 1 (FGF1) is extensively amplified in many tumors and accelerates tumor invasion and metastasis. However, the role and precise molecular mechanism by which FGF1 participates in thyroid cancer (TC) are still unclear., Methods: Quantitative real-time polymerase chain reaction- and western blotting were used to detect the mRNA and protein levels of FGF1, high mobility group A (HMGA1), epithelial-to-mesenchymal transition (EMT)-related factors, and FGFs in both TC tissues and cell lines. Immunohistochemistry was conducted to examine the expression of FGF1 and HMGA1. Immunofluorescence staining was used to detect the coexpression of FGF1 and HMGA1. Transwell and wound healing assays were conducted to evaluate the effects of FGF1 on the capacity of invasion and migration in cells., Results: FGF1 was upregulated in papillary thyroid carcinoma (PTC) tissues and cell lines and was relatively higher in PTC tissues with cervical lymph node metastasis. Furthermore, FGF1 promotes invasion and metastasis through the EMT pathway. Mechanistically, FGF1 promotes EMT through intracellular function independent of FGF receptors. Interestingly, we demonstrated that FGF1 could upregulate HMGA1 in TC cells, and the correlation of FGF1 and HMGA1 was positive in PTC tissues. FGF1 and HMGA1 had obvious colocalization in the nucleus. We further revealed that FGF1 promotes the invasion and migration of TC cells through the upregulation of HMGA1., Conclusion: Intracellular FGF1 could promote invasion and migration in TC by mediating the expression of HMGA1 independent of FGF receptors, and FGF1 may be an effective therapeutic target in TC.
- Published
- 2023
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34. Effects of different heat treatments on Maillard reaction products and volatile substances of camel milk.
- Author
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Zhao X, Guo Y, Zhang Y, Pang X, Wang Y, Lv J, and Zhang S
- Abstract
Camel milk has unique compositional, functional and therapeutic properties compared to cow's milk and also contains many protective proteins with anti-cancer, anti-diabetic and anti-bacterial properties. In this experiment, fresh camel milk was heat-treated at different temperatures and times, and the changes in Millard reaction products were analyzed. Meanwhile, headspace-gas chromatography-ion migration spectrometry (HS-GC-IMS), electronic nose and electronic tongue were used to analyze the changes of volatile components in camel milk after different heat treatments. The results showed that the Maillard reaction was more severe with the increase of heat treatment, and the contents of furosine and 5-hydroxymethylfurfural increased significantly when the heat treatment temperature was higher than 120°C. HS-GC-IMS results showed that the contents of aldehydes and ketones increased obviously with the increase of heat treatment degree. The study clarifies the effects of different heat treatment degrees on Maillard reaction degree and flavor of camel milk, which has practical production guidance significance for the research and industrialization of liquid camel milk products., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Zhao, Guo, Zhang, Pang, Wang, Lv and Zhang.)
- Published
- 2023
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35. Thromboelastography predicts dual antiplatelet therapy-related hemorrhage in patients with acute ischemic stroke.
- Author
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He D, Guo Y, Zhang Y, Zhao J, Wu L, Yu Z, Qu W, and Luo X
- Subjects
- Adenosine Diphosphate pharmacology, Drug Therapy, Combination, Hemorrhage chemically induced, Humans, Platelet Aggregation Inhibitors adverse effects, Thrombelastography, Treatment Outcome, Ischemic Stroke, Stroke diagnostic imaging, Stroke drug therapy
- Abstract
Background: Stratification of the risk of hemorrhage in patients with acute ischemic stroke following dual antiplatelet therapy (DAPT) is challenging. It remains unclear whether thromboelastography (TEG) can be used to predict DAPT-related hemorrhagic events., Objective: The present study aims to discover predictors for hemorrhage events after DAPT based on parameters such as TEG., Methods: A total of 859 patients with acute ischemic stroke who received DAPT were recruited consecutively. Demographic, clinical, and neuroimaging characteristics were evaluated at baseline; TEG parameters were obtained 7 days later after DAPT. Hemorrhagic events were monitored about 1 month after the stroke., Results: Of the patients, 61 (7.1%) had hemorrhagic events. Patients in the hemorrhage group had a lower adenosine diphosphate (ADP)-induced platelet-fibrin clot maximum amplitude and a higher ADP inhibition rate (ADP%) than those in the non-hemorrhage group (p<0.05). ADP% was confirmed as an independent predictor of hemorrhagic events with an optimal cut-off point of 83.3% (area under the curve (AUC) = 0.665, 95% CI 0.573 to 0.767, p<0.01). We constructed a logistic model based on D-dimer, National Institutes of Health Stroke Scale scores, and ADP% to predict hemorrhagic events in patients with acute ischemic stroke during DAPT (AUC=0.720, 95% CI 0.625 to 0.858, p<0.01), with a sensitivity of 72.1% and a specificity of 76.5%., Conclusions: Monitoring changes of TEG parameters helps to guide personalized DAPT for patients with ischemic stroke. A 30-82.3% range of ADP% is recommended for DAPT treatment., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2022. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2022
- Full Text
- View/download PDF
36. Association of Excessive Daytime Sleepiness with Cerebral Small Vessel Disease in Community-Dwelling Older Adults.
- Author
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Zhao J, Kong Q, Wang M, Huang H, Zhou X, Guo Y, Zhang Y, Wu L, Yu Z, and Luo X
- Abstract
Purpose: Excessive daytime sleepiness (EDS) and cerebral small vessel disease (CSVD) are common problems among older adults; however, their association is not clear. The present study aimed to investigate the frequency of EDS in CSVD patients and the relationship between EDS and neuroimaging markers of CSVD., Patients and Methods: We conducted a cross-sectional study among 1076 community-dwelling older adults aged 55-85 years. EDS was measured using the Epworth Sleepiness Scale (ESS), and EDS was defined as an ESS score greater than 10. Binary logistic regression was performed to assess the association between EDS and neuroimaging markers of CSVD., Results: Of the 1076 participants (mean age: 65.58 ± 6.46 years, 60.5% female), the prevalence of EDS was 10.0%. EDS was more frequent in participants with CSVD than in the total sample (20.0% vs 10.0%, p <0.001). In fully adjusted models, EDS was significantly correlated with CSVD burden (OR = 1.39, 95% CI 1.16 to 1.68, p <0.001), the severity of white matter hyperintensities (WMH) (OR = 1.33, 95% CI 1.14 to 1.54, p <0.001), and presence of lacunes (OR = 2.47, 95% CI 1.53 to 4.00, p <0.001) but not with the presence of cerebral microbleeds (CMBs) (OR=1.54, 95% CI 0.92 to 2.56, p = 0.099) or severity of enlarged perivascular spaces (EPVS) in basal ganglia (OR = 1.16, 95% CI 0.70 to 1.92, p = 0.564)., Conclusion: We found a high frequency of EDS symptoms in CSVD individuals. Further, EDS was significantly associated with WMH, lacunes, and CSVD burden. Our findings further suggest patients with CSVD may exhibit abnormal sleep-wake patterns., Competing Interests: The authors declare no conflicts of interest for this work., (© 2022 Zhao et al.)
- Published
- 2022
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- View/download PDF
37. Diffusible signal factor-mediated quorum sensing plays a central role in coordinating gene expression of Xanthomonas citri subsp. citri.
- Author
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Guo Y, Zhang Y, Li JL, and Wang N
- Subjects
- Bacterial Adhesion, Bacterial Proteins genetics, Bacterial Proteins metabolism, Citrus paradisi cytology, Citrus paradisi microbiology, Gene Expression Profiling, Gene Expression Regulation, Bacterial genetics, Genes, Bacterial genetics, Genetic Complementation Test, Genome, Bacterial genetics, Mutation, Oligonucleotide Array Sequence Analysis, Plant Leaves cytology, Plant Leaves microbiology, Quorum Sensing, RNA, Plant genetics, Signal Transduction, Virulence, Xanthomonas growth & development, Xanthomonas physiology, Citrus microbiology, Plant Diseases microbiology, Regulon genetics, Transcriptome genetics, Xanthomonas genetics, Xanthomonas pathogenicity
- Abstract
Diffusible signal factor (DSF) family signal-mediated quorum sensing (QS) has been identified in many gram-negative bacteria. This QS pathway of Xanthomonas spp. consists of three major QS components: RpfF, RpfC, and RpfG. The rpfF gene encodes a putative enoyl-CoA hydratase that catalyzes the synthesis of the signal molecule. RpfC and RpfG serve as a two-component system for the perception and transduction of the extracellular DSF family signals. In order to further characterize the QS regulatory network in Xanthomonas citri subsp. citri, we investigated the RpfF, RpfC, and RpfG regulons by using transcriptome analyses. Comparison of the transcriptomes of the QS mutants (rpfF, rpfC, and rpfG) with that of the wild-type strain revealed a core group of genes controlled by all three QS components, suggesting that the RpfC-RpfG two-component system is a major and conserved signal perception and transduction system for DSF family signal-mediated QS in X. citri subsp. citri. The unique genes controlled by RpfF alone indicate the complexity of the QS pathway and the involvement of additional sensory mechanisms in X. citri subsp. citri. The unique genes controlled by RpfC and RpfG, respectively, support the possibility that RpfC and RpfG play broader roles in gene regulation other than transduction of DSF signals.
- Published
- 2012
- Full Text
- View/download PDF
38. HrpG and HrpX play global roles in coordinating different virulence traits of Xanthomonas axonopodis pv. citri.
- Author
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Guo Y, Figueiredo F, Jones J, and Wang N
- Subjects
- Amino Acids biosynthesis, Bacterial Proteins genetics, Biological Transport, Chemotaxis, Gene Expression Profiling, Mutagenesis, Insertional, Mutation, Protein Array Analysis, Transcription Factors genetics, Virulence, Xanthomonas axonopodis classification, Xanthomonas axonopodis genetics, Xanthomonas axonopodis metabolism, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial physiology, Transcription Factors metabolism, Xanthomonas axonopodis pathogenicity
- Abstract
Xanthomonas axonopodis pv. citri is the causal agent of citrus canker, which is one of the most serious diseases of citrus. To understand the virulence mechanisms of X. axonopodis pv. citri, we designed and conducted genome-wide microarray analyses to characterize the HrpG and HrpX regulons, which are critical for the pathogenicity of X. axonopodis pv. citri. Our analyses revealed that 232 and 181 genes belonged to the HrpG and HrpX regulons, respectively. In total, 123 genes were overlapped in the two regulons at any of the three selected timepoints representing three growth stages of X. axonopodis pv. citri in XVM2 medium. Our results showed that HrpG and HrpX regulated all 24 type III secretion system genes, 23 type III secretion system effector genes, and 29 type II secretion system substrate genes. Our data revealed that X. axonopodis pv. citri regulates multiple cellular activities responding to the host environment, such as amino acid biosynthesis; oxidative phosphorylation; pentose-phosphate pathway; transport of sugar, iron, and potassium; and phenolic catabolism, through HrpX and HrpG. We found that 124 and 90 unknown genes were controlled by HrpG and HrpX, respectively. Our results suggest that HrpG and HrpX interplay with a global signaling network and co-ordinate the expression of multiple virulence factors for modification and adaption of host environment during X. axonopodis pv. citri infection.
- Published
- 2011
- Full Text
- View/download PDF
39. Requirement of the galU gene for polysaccharide production by and pathogenicity and growth In Planta of Xanthomonas citri subsp. citri.
- Author
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Guo Y, Sagaram US, Kim JS, and Wang N
- Subjects
- Bacterial Proteins genetics, Biofilms growth & development, Citrus paradisi microbiology, DNA Transposable Elements, Gene Deletion, Gene Expression Profiling, Genetic Complementation Test, Mutagenesis, Insertional, Plant Leaves microbiology, UTP-Glucose-1-Phosphate Uridylyltransferase genetics, Virulence, Virulence Factors biosynthesis, Xanthomonas growth & development, Xanthomonas metabolism, Bacterial Proteins metabolism, Citrus microbiology, Plant Diseases microbiology, Polysaccharides, Bacterial biosynthesis, UTP-Glucose-1-Phosphate Uridylyltransferase metabolism, Xanthomonas enzymology, Xanthomonas pathogenicity
- Abstract
Xanthomonas citri subsp. citri is the causal agent of citrus canker, which has a significant impact on citrus production. In this study, we characterized the galU gene of X. citri subsp. citri. Two galU mutants (F6 and D12) were identified in an X. citri subsp. citri EZ-Tn5
Tnp transposon library. Rescue cloning, sequence analysis, and Southern blot analysis indicated that both of these mutants had a single copy of the EZ-Tn5 transposon inserted in galU in the chromosome. Further study showed that galU was required for biosynthesis of extracellular polysaccharides (EPS; xanthan gum) and capsular polysaccharide (CPS) and biofilm formation. Mutation of galU resulted in a loss of pathogenicity for grapefruit. The loss of pathogenicity of a galU mutant resulted from its inability to grow in planta rather than from the effect on virulence genes. Quantitative reverse transcription-PCR assays indicated that mutation of galU did not impair the expression of key virulence genes, such as pthA of X. citri subsp. citri. Although D12 had a growth rate similar to that of the wild-type strain in nutrient broth, no D12 population became established in the intercellular spaces of citrus leaves. Coinoculation of a galU mutant with the wild-type strain did not promote growth of the galU mutant in planta. Defects in EPS and CPS production, pathogenicity, and growth in planta of the galU mutant were complemented to the wild-type level using plasmid pCGU2.1 containing an intact galU gene. These data indicate that the galU gene contributes to X. citri subsp. citri growth in intercellular spaces and is involved in EPS and CPS synthesis and biofilm formation. - Published
- 2010
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- View/download PDF
40. A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics.
- Author
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Guo Y, Zheng W, Rong X, and Huang Y
- Subjects
- Genes, rRNA, Molecular Sequence Data, Streptomyces griseus genetics, Bacterial Proteins genetics, Bacterial Typing Techniques, Phylogeny, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Streptomyces griseus classification
- Abstract
Streptomycetes are a complex group of actinomycetes that produce diverse bioactive metabolites of commercial significance. Systematics can provide a useful framework for identifying species that may produce novel metabolites. However, previously proposed approaches to the systematics of Streptomyces have suffered from either poor interlaboratory comparability or insufficient resolution. In particular, the Streptomyces griseus 16S rRNA gene clade is the most challenging and least defined group within the genus Streptomyces in terms of phylogeny. Here we report the results of a multilocus sequence analysis scheme developed to address the phylogeny of this clade. Sequence fragments of six housekeeping genes, atpD, gyrB, recA, rpoB, trpB and 16S rRNA, were obtained for 53 reference strains that represent 45 valid species and subspecies. Analysis of each individual locus confirmed the suitability of loci and the congruence of single-gene trees for concatenation. Concatenated trees of three, four, five and all six genes were constructed, and the stability of the topology and discriminatory power of each tree were analysed. It can be concluded from the results that phylogenetic analysis based on multilocus sequences is more accurate and robust for species delineation within Streptomyces. A multilocus phylogeny of six genes proved to be optimal for elucidating the interspecies relationships within the S. griseus 16S rRNA gene clade. Our multilocus sequence analysis scheme provides a valuable tool that can be applied to other Streptomyces clades for refining the systematic framework of this genus.
- Published
- 2008
- Full Text
- View/download PDF
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