37 results on '"Gregory, Alyssa D"'
Search Results
2. Single cell RNA sequencing identifies IGFBP5 and QKI as ciliated epithelial cell genes associated with severe COPD
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Li, Xiuying, Noell, Guillaume, Tabib, Tracy, Gregory, Alyssa D., Trejo Bittar, Humberto E., Vats, Ravi, Kaminski, Tomasz W., Sembrat, John, Snyder, Mark E., Chandra, Divay, Chen, Kong, Zou, Chunbin, Zhang, Yingze, Sundd, Prithu, McDyer, John F., Sciurba, Frank, Rojas, Mauricio, Lafyatis, Robert, Shapiro, Steve D., Faner, Rosa, and Nyunoya, Toru
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- 2021
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3. Cost of surviving sepsis: a novel model of recovery from sepsis in Drosophila melanogaster
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Kaynar, Ata Murat, Bakalov, Veli, Laverde, Silvia Martinez, Cambriel, Amélie I. F., Lee, Byoung-Hoon, Towheed, Atif, Gregory, Alyssa D., Webb, Steven A. R., Palladino, Michael J., Bozza, Fernando A., Shapiro, Steven D., and Angus, Derek C.
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- 2016
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4. Variable Susceptibility to Cigarette Smoke-Induced Emphysema in 34 Inbred Strains of Mice Implicates Abi3bp in Emphysema Susceptibility
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Radder, Josiah E., Gregory, Alyssa D., Leme, Adriana S., Cho, Michael H., Chu, Yanxia, Kelly, Neil J., Bakke, Per, Gulsvik, Amund, Litonjua, Augusto A., Sparrow, David, Beaty, Terri H., Crapo, James D., Silverman, Edwin K., Zhang, Yingze, Berndt, Annerose, and Shapiro, Steven D.
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- 2017
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5. Clathrin Pit-mediated Endocytosis of Neutrophil Elastase and Cathepsin G by Cancer Cells
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Gregory, Alyssa D., Hale, Pamela, Perlmutter, David H., and Houghton, A.McGarry
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- 2012
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6. Alveolar macrophages inherently express PD-L1 for optimal protective immunity and tolerance
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Sun, Fan, Li, Liwen, Xiao, Yadong, Gregory, Alyssa D., Shapiro, Steven D., Xiao, Gutian, and Qu, Zhaoxia
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Mice, Knockout ,Mice ,Macrophages, Alveolar ,B7-1 Antigen ,Animals ,Mice, Inbred Strains ,Article ,B7-H1 Antigen - Abstract
Macrophages play a central role in lung physiology and pathology. Herein, we show in mice that alveolar macrophages (AMs), unlike other macrophage types [interstitial macrophages (IMs), and peritoneal and splenic macrophages], constitutively express PD-L1, thereby possessing a superior phagocytic ability and the capacity to repress cytotoxic T lymphocytes (CTLs) by cis- and trans-interacting with CD80 and PD-1, respectively. This extraordinary ability of AMs assures optimal protective immunity and tolerance within the lung. These findings uncover a unique characteristic of AMs and an innate immune function of PD-L1 and CD80, therefore help understand lung physiology, diseases and PD-L1/PD-1-based immunotherapy.
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- 2021
7. Neutrophil elastase-mediated degradation of IRS-1 accelerates lung tumor growth
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Houghton, A. McGarry, Rzymkiewicz, Danuta M., Ji, Hongbin, Gregory, Alyssa D., Egea, Eduardo E., Metz, Heather E., Stolz, Donna B., Land, Stephanie R., Marconcini, Luiz A., Kliment, Corrine R., Jenkins, Kimberly M., Beaulieu, Keith A., Mouded, Majd, Frank, Stuart J., Wong, Kwok K., and Shapiro, Steven D.
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Care and treatment ,Physiological aspects ,Research ,Growth ,Company growth ,Lung cancer -- Care and treatment -- Research ,Cellular signal transduction -- Research ,Elastases -- Physiological aspects -- Research ,Platelet-derived growth factor -- Growth -- Physiological aspects -- Research - Abstract
Lung cancer is the leading cause of cancer-related deaths worldwide, with dismal ~15% five-year survival rates despite therapeutic advances over the past few decades (1). A better understanding of tumor-associated [...], Lung cancer is the leading cause of cancer death worldwide (1). Recent data suggest that tumor-associated inflammatory cells may modify lung tumor growth and invasiveness (2,3). To determine the role of neutrophil elastase (encoded by Elane) on tumor progression, we used the loxP-Stop-loxP [K-ras.sup.G12D] (LSL-K-ras) model of mouse lung adenocarcinoma (4) to generate [LSL-K-ras-Elane.sup.-/-] mice. Tumor burden was markedly reduced in [LSL-K-ras-Elane.sup.-/-] mice at all time points after induction of mutant K-ras expression. Kaplan-Meier survival analysis showed that whereas all [LSL-K-ras-Elane.sup.+/+] mice died, none of the mice lacking neutrophil elastase died. Neutrophil elastase directly induced tumor cell proliferation in both human and mouse lung adenocarcinomas by gaining access to an endosomal compartment within tumor cells, where it degraded insulin receptor substrate-1 (IRS-1). Immunoprecipitation studies showed that, as neutrophil elastase degraded IRS-1, there was increased interaction between phosphatidylinositol 3-kinase (PI3K) and the potent mitogen platelet-derived growth factor receptor (PDGFR), thereby skewing the PI3K axis toward tumor cell proliferation. The inverse relationship identified between neutrophil elastase and IRS-1 in LSL-K-ras mice was also identified in human lung adenocarcinomas, thus translating these findings to human disease. This study identifies IRS-1 as a key regulator of PI3K within malignant cells. Additionally, to our knowledge, this is the first description of a secreted proteinase gaining access to the inside of a cell and altering intracellular signaling.
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- 2010
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8. Lentiviral-mediated RNAi inhibition of Sbds in murine hematopoietic progenitors impairs their hematopoietic potential
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Rawls, Amy S., Gregory, Alyssa D., Woloszynek, Jill R., Liu, Fulu, and Link, Daniel C.
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- 2007
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9. Regulation of systemic and local neutrophil responses by G-CSF during pulmonary Pseudomonas aeruginosa infection
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Gregory, Alyssa D., Hogue, Lisa A., Ferkol, Thomas W., and Link, Daniel C.
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- 2007
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10. G-CSF Is an Essential Regulator of Neutrophil Trafficking from the Bone Marrow to the Blood
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Semerad, Craig L, Liu, Fulu, Gregory, Alyssa D, Stumpf, Katherine, and Link, Daniel C
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- 2002
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11. Toll-Interacting Protein in Pulmonary Diseases: Abiding by the Goldilocks Principle.
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Xiaoyun Li, Goobie, Gillian C., Gregory, Alyssa D., Kass, Daniel J., and Yingze Zhang
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ADAPTOR proteins ,LUNG diseases ,COMMUNICABLE diseases ,BIOMARKERS ,GENETIC research - Abstract
TOLLIP (Toll-interacting protein) is an intracellular adaptor protein with diverse actions throughout the body. In a context- and cell type--specific manner, TOLLIP can function as an inhibitor of inflammation and endoplasmic-reticulum stress, an activator of autophagy, or a critical regulator of intracellular vacuole trafficking. The distinct functions of this protein have been linked to innate immune responses and lung epithelial-cell apoptosis. TOLLIP genetic variants have been associated with a variety of chronic lung diseases, including idiopathic pulmonary fibrosis, asthma, and primary graft dysfunction after lung transplantation, and with infections, such as tuberculosis, Legionella pneumonia, and respiratory viruses. TOLLIP exists in a delicate homeostatic balance, with both positive and negative effects on the trajectory of pulmonary diseases. This translational review summarizes the genetic and molecular associations that link TOLLIP to the development and progression of noninfectious and infectious pulmonary diseases. We highlight current limitations of in vitro and in vivo models in assessing the role of TOLLIP in these conditions, and we describe future approaches that will enable a more nuanced exploration of the role of TOLLIP in pulmonary conditions. There has been a surge in recent research evaluating the role of this protein in human diseases, but critical mechanistic pathways require further exploration. By understanding its biologic functions in disease-specific contexts, we will be able to determine whether TOLLIP can be therapeutically modulated to treat pulmonary diseases. [ABSTRACT FROM AUTHOR]
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- 2021
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12. FSTL-1 Attenuation Causes Spontaneous Smoke-Resistant Pulmonary Emphysema.
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Henkel, Matthew, Partyka, Jessica, Gregory, Alyssa D., Forno, Erick, Cho, Michael H., Eddens, Taylor, Tout, Andrew R., Salamacha, Nathan, Horne, William, Rao, Krithika S., Yijen Wu, Alcorn, John F., Kostka, Dennis, Hirsch, Raphael, Celedón, Juan C., Shapiro, Steven D., Kolls, Jay K., Campfield, Brian T., and Wu, Yijen
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PULMONARY emphysema ,HOMEOSTASIS ,LUNG diseases ,MORPHOMETRICS ,RNA sequencing ,GENETIC epidemiology ,PROTEIN metabolism ,IN vitro studies ,PROTEINS ,RESEARCH ,GENETIC mutation ,LUNGS ,ANIMAL experimentation ,RESEARCH methodology ,MACROPHAGES ,GENETIC polymorphisms ,EVALUATION research ,SMOKE ,COMPARATIVE studies ,OBSTRUCTIVE lung diseases ,GENES ,RESEARCH funding ,COMPUTED tomography ,EPITHELIAL cells ,GENETIC techniques ,CARRIER proteins ,TOBACCO ,MICE ,PHOSPHORYLATION - Abstract
Rationale: The role of FSTL-1 (follistatin-like 1) in lung homeostasis is unknown.Objectives: We aimed to define the impact of FSTL-1 attenuation on lung structure and function and to identify FSTL-1-regulated transcriptional pathways in the lung. Further, we aimed to analyze the association of FSTL-1 SNPs with lung disease.Methods: FSTL-1 hypomorphic (FSTL-1 Hypo) mice underwent lung morphometry, pulmonary function testing, and micro-computed tomography. Fstl1 expression was determined in wild-type lung cell populations from three independent research groups. RNA sequencing of wild-type and FSTL-1 Hypo mice identified FSTL-1-regulated gene expression, followed by validation and mechanistic in vitro examination. FSTL1 SNP analysis was performed in the COPDGene (Genetic Epidemiology of Chronic Obstructive Pulmonary Disease) cohort.Measurements and Main Results: FSTL-1 Hypo mice developed spontaneous emphysema, independent of smoke exposure. Fstl1 is highly expressed in the lung by mesenchymal and endothelial cells but not immune cells. RNA sequencing of whole lung identified 33 FSTL-1-regulated genes, including Nr4a1, an orphan nuclear hormone receptor that negatively regulates NF-κB (nuclear factor-κB) signaling. In vitro, recombinant FSTL-1 treatment of macrophages attenuated NF-κB p65 phosphorylation in an Nr4a1-dependent manner. Within the COPDGene cohort, several SNPs in the FSTL1 region corresponded to chronic obstructive pulmonary disease and lung function.Conclusions: This work identifies a novel role for FSTL-1 protecting against emphysema development independent of smoke exposure. This FSTL-1-deficient emphysema implicates regulation of immune tolerance in lung macrophages through Nr4a1. Further study of the mechanisms involving FSTL-1 in lung homeostasis, immune regulation, and NF-κB signaling may provide additional insight into the pathophysiology of emphysema and inflammatory lung diseases. [ABSTRACT FROM AUTHOR]
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- 2020
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13. Follistatin-like 1 Attenuation Causes Spontaneous Smoke-Resistant Pulmonary Emphysema.
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Henkel, Matthew, Partyka, Jessica, Gregory, Alyssa D., Forno, Erick, Cho, Michael H., Eddens, Taylor, Tout, Andrew R., Salamacha, Nathan, Horne, William, Rao, Krithika S., Yijen Wu, Alcorn, John F., Kostka, Dennis, Hirsch, Raphael, Celedón, Juan C., Shapiro, Steven D., Kolls, Jay K., and Campfield, Brian T.
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ONLINE databases ,FOLLISTATIN ,PULMONARY emphysema ,FLOW cytometry ,IMMUNOHISTOCHEMISTRY - Abstract
The article presents the online data supplement for Follistatin-like 1 Attenuation that causes spontaneous smoke-resistant Pulmonary Emphysema. The topics of discussion includes online supplemental methods for Lung imaging, Lung function testing and Flow Cytometry or Cell Sorting alongwith Annexin V or 7-AAD Flow Cytometry, Immunohistochemistry and Whole-transcriptome analysis with total RNA sequencing.
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- 2020
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14. Macrophage Elastase Induces TRAIL-mediated Tumor Cell Death through Its Carboxy-Terminal Domain.
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Dandachi, Nadine, Kelly, Neil J., Wood, John P., Burton, Christine L., Radder, Josiah E., Leme, Adriana S., Gregory, Alyssa D., and Shapiro, Steven D.
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ANIMAL experimentation ,ANIMALS ,APOPTOSIS ,BIOCHEMISTRY ,BIOLOGICAL models ,CARRIER proteins ,CELL death ,CELL lines ,CELL physiology ,CELL receptors ,LUNG cancer ,LUNG tumors ,PHENOMENOLOGY ,MICE ,PROTEOLYTIC enzymes ,RESEARCH funding - Abstract
Rationale: Macrophage elastase (matrix metalloproteinase [MMP]-12) is a potent protease that contributes to the lung destruction that accompanies cigarette smoking; it simultaneously inhibits lung tumor angiogenesis and metastasis by catalyzing the formation of antiangiogenic peptides. Recent studies have revealed novel nonproteolytic functions of MMP12, including antimicrobial activity through a peptide within its C-terminal domain (CTD).Objectives: To determine whether the MMP12 CTD contributes to its antitumor activity in lung cancer.Methods: We used recombinant MMP12 peptide fragments, including its catalytic domain, CTD, and a 20 amino acid peptide within the CTD (SR20), in an in vitro system to delineate their effects on non-small cell lung cancer cell proliferation and apoptosis. We translated our findings to two murine models of lung cancer, including orthotopic human xenograft and KrasLSL/G12D mouse models of lung cancer.Measurements and Main Results: We show that SR20 triggers tumor apoptosis by up-regulation of gene expression of tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) and its receptor, death receptor 4, sensitizing cells to an autocrine loop of TRAIL-mediated cell death. We then demonstrate the therapeutic efficacy of SR20 against two murine models of lung cancer.Conclusions: The MMP12 CTD initiates TRAIL-mediated tumor cell death through its conserved SR20 peptide. [ABSTRACT FROM AUTHOR]- Published
- 2017
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15. Extreme Trait Whole-Genome Sequencing Identifies PTPRO as a Novel Candidate Gene in Emphysema with Severe Airflow Obstruction.
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Radder, Josiah E., Yingze Zhang, Gregory, Alyssa D., Yu, Shibing, Kelly, Neil J., Leader, Joseph K., Kaminski, Naftali, Sciurba, Frank C., Shapiro, Steven D., and Zhang, Yingze
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DISEASE susceptibility ,PULMONARY emphysema ,OBSTRUCTIVE lung diseases ,PHOSPHATASES ,RESEARCH funding ,SEQUENCE analysis - Abstract
Rationale: Genetic association studies in chronic obstructive pulmonary disease have primarily tested for association with common variants, the results of which explain only a portion of disease heritability. Because rare variation is also likely to contribute to susceptibility, we used whole-genome sequencing of subjects with clinically extreme phenotypes to identify genomic regions enriched for rare variation contributing to chronic obstructive pulmonary disease susceptibility.Objectives: To identify regions of rare genetic variation contributing to emphysema with severe airflow obstruction.Methods: We identified heavy smokers that were resistant (n = 65) or susceptible (n = 64) to emphysema with severe airflow obstruction in the Pittsburgh Specialized Center of Clinically Oriented Research cohort. We filtered whole-genome sequencing results to include only rare variants and conducted single variant tests, region-based tests across the genome, gene-based tests, and exome-wide tests.Measurements and Main Results: We identified several suggestive associations with emphysema with severe airflow obstruction, including a suggestive association of all rare variation in a region within the gene ZNF816 (19q13.41; P = 4.5 × 10-6), and a suggestive association of nonsynonymous coding rare variation in the gene PTPRO (P = 4.0 × 10-5). Association of rs61754411, a rare nonsynonymous variant in PTPRO, with emphysema and obstruction was demonstrated in all non-Hispanic white individuals in the Pittsburgh Specialized Center of Clinically Oriented Research cohort. We found that cells containing this variant have decreased signaling in cellular pathways necessary for survival and proliferation.Conclusions: PTPRO is a novel candidate gene in emphysema with severe airflow obstruction, and rs61754411 is a previously unreported rare variant contributing to emphysema susceptibility. Other suggestive candidate genes, such as ZNF816, are of interest for future studies. [ABSTRACT FROM AUTHOR]- Published
- 2017
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16. Mouse Genome-Wide Association Study of Preclinical Group II Pulmonary Hypertension Identifies Epidermal Growth Factor Receptor.
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Kelly, Neil J., Radder, Josiah E., Baust, Jeffrey J., Burton, Christine L., Yen-Chun Lai, Potoka, Karin C., Agostini, Brittani A., Wood, John P., Bachman, Timothy N., Vanderpool, Rebecca R., Dandachi, Nadine, Leme, Adriana S., Gregory, Alyssa D., Morris, Alison, Mora, Ana L., Gladwin, Mark T., and Shapiro, Steven D.
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- 2017
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17. Cigarette smoke destabilizes NLRP3 protein by promoting its ubiquitination.
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Seung Hye Han, Jerome, Jacob A., Gregory, Alyssa D., Mallampalli, Rama K., and Han, SeungHye
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PHYSIOLOGICAL effects of tobacco ,UBIQUITINATION ,PROTEINS in the body ,INFLAMMASOMES ,MACROPHAGES ,IMMUNOSUPPRESSION ,ANIMAL experimentation ,BIOCHEMISTRY ,CELL lines ,PHENOMENOLOGY ,MICE ,MONOCYTES ,PROTEINS ,RESEARCH funding ,SMOKE ,TOBACCO products - Abstract
Background: Cigarette smoke suppresses innate immunity, making smokers more susceptible to infection. The NLRP3 inflammasome is a multi-protein complex that releases interleukin (IL) -1β and IL -18. These cytokines are critical for a timely host response to pathogens. Whether cigarette smoke affects NLRP3 protein levels, and its ability to form an inflammasome, is not known.Methods and Results: Using the human monocyte THP1 cell line and C57BL/6 mice, we show that cigarette smoke decreases NLRP3 levels in cells by increasing ubiquitin-mediated proteasomal processing. Half-life of NLRP3 is shortened with the exposure to cigarette smoke extract. Cigarette smoke extract reduces cellular NLRP3 protein abundance in the presence of lipopolysaccharide, a known inducer of NLRP3 protein, thereby decreasing the formation of NLRP3 inflammasomes. The release of IL-1β and IL-18 by inflammasome activation is also decreased with the exposure to cigarette smoke extract both in THP1 cells and primary human peripheral blood macrophages.Conclusions: Cigarette smoke extract decreased NLRP3 protein abundance via increased ubiquitin-mediated proteasomal processing. The release of IL-1β and IL-18 is also decreased with cigarette smoke extract. Our findings may provide mechanistic insights on immunosuppression in smokers and unique opportunities to develop a strategy to modulate immune function. [ABSTRACT FROM AUTHOR]- Published
- 2017
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18. Effects of intra-abdominal sepsis on atherosclerosis in mice.
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Kaynar, Ata Murat, Yende, Sachin, Lin Zhu, Frederick, Daniel R., Chambers, Robin, Burton, Christine L., Carter, Melinda, Stolz, Donna Beer, Agostini, Brittani, Gregory, Alyssa D., Nagarajan, Shanmugam, Shapiro, Steven D., and Angus, Derek C.
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- 2014
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19. Clathrin-Mediated Endocytosis of Neutrophil Elastase and Cathepsin G by Lung Tumor Epithelial Cells
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Gregory, Alyssa D., Hale, Pamela D., Perlmutter, David H., Shapiro, Steven D., and Houghton, A. McGarry
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- 2012
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20. USP13 deficiency aggravates cigarette smoke‐induced alveolar space enlargement through stabilization of TXNIP.
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He, Jinshan, Gregory, Alyssa D, Tran, Kevin C, Tamaskar, Arya S, Wei, Jianxin, Zhao, Jing, and Zhao, Yutong
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R4108 --> 649.9 --> Deubiquitinating enzymes regulate cellular function through deubiquitination and stabilization of substrate proteins. We have shown that USP13 deficiency promotes lung inflammation. Cigarette smoke (CS) causes lung connective tissue disruption and oxidative stress in lung cells, resulting in the development of emphysema; however, the role of USP13 in the CS exposure‐induced emphysema has not been well studied. USP13‐deficient mice and wild type mice were exposed to 4 unfiltered cigarettes for 5 days each week, over the course of 6 months. While emphysema was not observed in wild type mice, CS exposure increased γ‐H2AX levels in lung tissues, suggesting a model of mild smoke exposure was established. Under the mild CS exposure condition, USP13‐deficient mice show significant increases in alveolar CL, indicating that USP13‐deficient mice are susceptible to CS‐induced alveolar enlargement. We have shown that USP13 knockout reduced fibronectin expression in lungs. Further, we found that collagen levels were reduced in USP13‐siRNA‐transfected lung fibroblast cells. It is possible that a loss of connective tissue function contributes to alveolar enlargement in USP13‐deficient mice. Oxidative stress is a hallmark of CS‐induced emphysema. We investigated the role of USP13 in the expression of an oxidative stress markers, named thioredoxin interacting protein (TXNIP), which modulates cellular redox states and NLRP3 inflammasome activity. TXNIP expression levels have been shown to be decreased in smokers compared with non‐smokers. TXNIP is unstable in the presence of protein synthesis inhibitor cycloheximide (CHX). Pretreatment with proteasome inhibitor, MG‐132, attenuated TXNIP degradation, suggesting that TXNIP degradation is mediated by the proteasome. Knockout or knockdown of USP13 in lungs or lung fibroblast cells significantly reduced TXNIP levels. TXNIP degradation is increased in USP13 knockdown cells. Further, the reduction of TXNIP was observed in USP13‐inhibitor‐treated mouse lung epithelial cells. This study provides evidence showing that USP13 deficiency plays a role in alveolar space enlargement. [ABSTRACT FROM AUTHOR]
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- 2022
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21. Extracellular Release of Mitochondrial DNA: Triggered by Cigarette Smoke and Detected in COPD.
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Giordano, Luca, Gregory, Alyssa D., Pérez Verdaguer, Mireia, Ware, Sarah A., Harvey, Hayley, DeVallance, Evan, Brzoska, Tomasz, Sundd, Prithu, Zhang, Yingze, Sciurba, Frank C., Shapiro, Steven D., and Kaufman, Brett A.
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MITOCHONDRIAL DNA , *SMOKING , *CIGARETTE smoke , *NUCLEAR DNA , *CHRONIC obstructive pulmonary disease - Abstract
Cigarette smoke (CS) is the most common risk factor for chronic obstructive pulmonary disease (COPD). The present study aimed to elucidate whether mtDNA is released upon CS exposure and is detected in the plasma of former smokers affected by COPD as a possible consequence of airway damage. We measured cell-free mtDNA (cf-mtDNA) and nuclear DNA (cf-nDNA) in COPD patient plasma and mouse serum with CS-induced emphysema. The plasma of patients with COPD and serum of mice with CS-induced emphysema showed increased cf-mtDNA levels. In cell culture, exposure to a sublethal dose of CSE decreased mitochondrial membrane potential, increased oxidative stress, dysregulated mitochondrial dynamics, and triggered mtDNA release in extracellular vesicles (EVs). Mitochondrial DNA release into EVs occurred concomitantly with increased expression of markers that associate with DNA damage responses, including DNase III, DNA-sensing receptors (cGAS and NLRP3), proinflammatory cytokines (IL-1β, IL-6, IL-8, IL-18, and CXCL2), and markers of senescence (p16 and p21); the majority of the responses are also triggered by cytosolic DNA delivery in vitro. Exposure to a lethal CSE dose preferentially induced mtDNA and nDNA release in the cell debris. Collectively, the results of this study associate markers of mitochondrial stress, inflammation, and senescence with mtDNA release induced by CSE exposure. Because high cf-mtDNA is detected in the plasma of COPD patients and serum of mice with emphysema, our findings support the future study of cf-mtDNA as a marker of mitochondrial stress in response to CS exposure and COPD pathology. [ABSTRACT FROM AUTHOR]
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- 2022
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22. Conditioning of Monocytes in the Bone Marrow by Inflammatory Cytokines Inhibits Their Angiogenic Potential at Peripheral Sites of Ischemia
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Gregory, Alyssa D., Capoccia, Benjamin J., and Link, Daniel C.
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- 2008
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23. The Inflammatory Subset of Monocytes Stimulates Angiogenesis at Sites of Ischemia by Altering the Balance of Pro- and Anti-Inflammatory Cytokines.
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Gregory, Alyssa D., Capoccia, Benjamin J., and Link, Daniel C.
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- 2007
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24. Adenine nucleotide translocase regulates airway epithelial metabolism, surface hydration and ciliary function.
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Kliment, Corrine R., Nguyen, Jennifer M. K., Kaltreider, Mary Jane, YaWen Lu, Claypool, Steven M., Radder, Josiah E., Sciurba, Frank C., Yingze Zhang, Gregory, Alyssa D., Iglesias, Pablo A., Sidhaye, Venkataramana K., and Robinson, Douglas N.
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MUCOCILIARY system ,ADENINE ,OBSTRUCTIVE lung diseases ,CILIA & ciliary motion ,SMOKING ,AIRWAY (Anatomy) ,CIGARETTE smoke - Abstract
Airway hydration and ciliary function are critical to airway homeostasis and dysregulated in chronic obstructive pulmonary disease (COPD), which is impacted by cigarette smoking and has no therapeutic options. We utilized a high-copy cDNA library genetic selection approach in the amoeba Dictyostelium discoideum to identify genetic protectors to cigarette smoke. Members of the mitochondrial ADP/ATP transporter family adenine nucleotide translocase (ANT) are protective against cigarette smoke in Dictyostelium and human bronchial epithelial cells. Gene expression of ANT2 is reduced in lung tissue from COPD patients and in a mouse smoking model, and overexpression of ANT1 and ANT2 resulted in enhanced oxidative respiration and ATP flux. In addition to the presence of ANT proteins in the mitochondria, they reside at the plasma membrane in airway epithelial cells and regulate airway homeostasis. ANT2 overexpression stimulates airway surface hydration by ATP and maintains ciliary beating after exposure to cigarette smoke, both of which are key functions of the airway. Our study highlights a potential for upregulation of ANT proteins and/or of their agonists in the protection from dysfunctional mitochondrial metabolism, airway hydration and ciliary motility in COPD. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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25. Regulation of Systemic and Local Neutrophil Responses by G-CSF during Pulmonary Pseudomonas aeruginosa Infection.
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Gregory, Alyssa D., Hogue, Lisa A., Ferkol, Thomas W., and Link, Daniel C.
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- 2004
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26. Authors' response.
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Kaynar, A. Murat, Gregory, Alyssa D., Shapiro, Steven D., and Angus, Derek C.
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- 2014
27. Interpretable machine learning uncovers epithelial transcriptional rewiring and a role for Gelsolin in COPD.
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Sui J, Xiao H, Mbaekwe U, Ting NC, Murday K, Hu Q, Gregory AD, Kapellos TS, Yildirim AÖ, Königshoff M, Zhang Y, Sciurba F, Das J, and Kliment CR
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- Humans, Animals, Mice, Epithelial Cells metabolism, Male, Disease Models, Animal, Transcriptome, Female, Gene Regulatory Networks, Gene Expression Profiling, Lung metabolism, Lung pathology, Pulmonary Disease, Chronic Obstructive genetics, Pulmonary Disease, Chronic Obstructive metabolism, Pulmonary Disease, Chronic Obstructive pathology, Gelsolin genetics, Gelsolin metabolism, Machine Learning
- Abstract
Transcriptomic analyses have advanced the understanding of complex disease pathophysiology including chronic obstructive pulmonary disease (COPD). However, identifying relevant biologic causative factors has been limited by the integration of high dimensionality data. COPD is characterized by lung destruction and inflammation, with smoke exposure being a major risk factor. To define previously unknown biological mechanisms in COPD, we utilized unsupervised and supervised interpretable machine learning analyses of single-cell RNA-Seq data from the mouse smoke-exposure model to identify significant latent factors (context-specific coexpression modules) impacting pathophysiology. The machine learning transcriptomic signatures coupled to protein networks uncovered a reduction in network complexity and new biological alterations in actin-associated gelsolin (GSN), which was transcriptionally linked to disease state. GSN was altered in airway epithelial cells in the mouse model and in human COPD. GSN was increased in plasma from patients with COPD, and smoke exposure resulted in enhanced GSN release from airway cells from patients with COPD. This method provides insights into rewiring of transcriptional networks that are associated with COPD pathogenesis and provides a translational analytical platform for other diseases.
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- 2024
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28. Alveolar Macrophages Inherently Express Programmed Death-1 Ligand 1 for Optimal Protective Immunity and Tolerance.
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Sun F, Li L, Xiao Y, Gregory AD, Shapiro SD, Xiao G, and Qu Z
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- Animals, B7-1 Antigen immunology, Mice, Mice, Inbred Strains, Mice, Knockout, B7-H1 Antigen immunology, Macrophages, Alveolar immunology
- Abstract
Macrophages play a central role in lung physiology and pathology. In this study, we show in mice that alveolar macrophages (AMs), unlike other macrophage types (interstitial, peritoneal, and splenic macrophages), constitutively express programmed death-1 ligand 1 (PD-L1), thereby possessing a superior phagocytic ability and the capacity to repress CTLs by cis - and trans -interacting with CD80 and programmed death-1 (PD-1), respectively. This extraordinary ability of AMs assures optimal protective immunity and tolerance within the lung. These findings uncover a unique characteristic of AMs and an innate immune function of PD-L1 and CD80 and therefore help in the understanding of lung physiology, diseases, and PD-L1/PD-1-based immunotherapy., (Copyright © 2021 by The American Association of Immunologists, Inc.)
- Published
- 2021
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29. RIP3-dependent necroptosis contributes to the pathogenesis of chronic obstructive pulmonary disease.
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Chen D, Gregory AD, Li X, Wei J, Burton CL, Gibson G, Scott SJ, St Croix CM, Zhang Y, and Shapiro SD
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- Adult, Aged, Aged, 80 and over, Animals, Apoptosis, Cell Line, Female, Humans, Lung metabolism, Lung pathology, Macrophages metabolism, Male, Mice, Middle Aged, Tobacco Smoke Pollution, Necroptosis genetics, Necroptosis physiology, Pulmonary Disease, Chronic Obstructive genetics, Pulmonary Disease, Chronic Obstructive metabolism, Pulmonary Disease, Chronic Obstructive pathology, Receptor-Interacting Protein Serine-Threonine Kinases genetics, Receptor-Interacting Protein Serine-Threonine Kinases metabolism
- Abstract
Necroptosis has emerged as a potential mechanism in the pathogenesis of chronic obstructive pulmonary disease (COPD). Here, we found that markers of necroptosis, including high mobility group box 1 release and phosphorylation of mixed lineage kinase domain-like protein (p-MLKL), were markedly induced in the late stage of cigarette smoking-induced (CS-induced) emphysema in mouse lung tissue as well as in lung epithelial cells and organoids with higher dosage of or more prolonged exposure to cigarette smoking extract (CSE). Apoptotic signals were also detected and maximally induced in the early stage of CS-exposed mice and CSE-treated epithelial cells. Inhibition of apoptosis by Z-VAD, a pan-caspase inhibitor, switched the cellular stress to enhanced necroptosis in lung epithelial cells and organoids treated with CSE. Depletion or inhibition of receptor-interacting protein kinase 3 (RIP3) or MLKL attenuated the CSE-induced cell death, suggesting that necroptosis contributes to CSE-induced cell death. Silencing or inhibition of RIP1 had no protective effect, indicating a RIP1-independent RIP3 activation pathway. CSE-induced necroptosis released more damage-associated molecular patterns and evoked greater engulfment but slower clearance by bone marrow-derived macrophages, leading to enhanced expression of proinflammatory cytokines Tnfα and Il6. Finally, our in vivo data verified that inhibition of necroptosis by RIP3 inhibitor GSK'872 protected mice from CS-induced emphysema and suppressed the lung inflammation. In conclusion, we provide evidence that necroptosis contributes to the pathogenesis of COPD. Targeting RIP3 and its downstream pathway may be an effective therapy for COPD.
- Published
- 2021
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- View/download PDF
30. Toll-Interacting Protein in Pulmonary Diseases. Abiding by the Goldilocks Principle.
- Author
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Li X, Goobie GC, Gregory AD, Kass DJ, and Zhang Y
- Subjects
- Animals, Asthma immunology, Asthma pathology, Cytokines genetics, Cytokines immunology, Disease Models, Animal, Gene Expression Regulation, Graft Rejection immunology, Graft Rejection pathology, Humans, Idiopathic Pulmonary Fibrosis immunology, Idiopathic Pulmonary Fibrosis pathology, Immunity, Innate, Intracellular Signaling Peptides and Proteins immunology, Legionnaires' Disease genetics, Legionnaires' Disease immunology, Legionnaires' Disease microbiology, Legionnaires' Disease pathology, Lung Transplantation, Mice, MicroRNAs genetics, MicroRNAs immunology, Respirovirus Infections genetics, Respirovirus Infections immunology, Respirovirus Infections pathology, Respirovirus Infections virology, Signal Transduction, Tuberculosis, Pulmonary genetics, Tuberculosis, Pulmonary immunology, Tuberculosis, Pulmonary microbiology, Tuberculosis, Pulmonary pathology, Asthma genetics, Graft Rejection genetics, Idiopathic Pulmonary Fibrosis genetics, Intracellular Signaling Peptides and Proteins genetics
- Abstract
TOLLIP (Toll-interacting protein) is an intracellular adaptor protein with diverse actions throughout the body. In a context- and cell type-specific manner, TOLLIP can function as an inhibitor of inflammation and endoplasmic-reticulum stress, an activator of autophagy, or a critical regulator of intracellular vacuole trafficking. The distinct functions of this protein have been linked to innate immune responses and lung epithelial-cell apoptosis. TOLLIP genetic variants have been associated with a variety of chronic lung diseases, including idiopathic pulmonary fibrosis, asthma, and primary graft dysfunction after lung transplantation, and with infections, such as tuberculosis, Legionella pneumonia, and respiratory viruses. TOLLIP exists in a delicate homeostatic balance, with both positive and negative effects on the trajectory of pulmonary diseases. This translational review summarizes the genetic and molecular associations that link TOLLIP to the development and progression of noninfectious and infectious pulmonary diseases. We highlight current limitations of in vitro and in vivo models in assessing the role of TOLLIP in these conditions, and we describe future approaches that will enable a more nuanced exploration of the role of TOLLIP in pulmonary conditions. There has been a surge in recent research evaluating the role of this protein in human diseases, but critical mechanistic pathways require further exploration. By understanding its biologic functions in disease-specific contexts, we will be able to determine whether TOLLIP can be therapeutically modulated to treat pulmonary diseases.
- Published
- 2021
- Full Text
- View/download PDF
31. PDLIM2 repression by ROS in alveolar macrophages promotes lung tumorigenesis.
- Author
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Li L, Sun F, Han L, Liu X, Xiao Y, Gregory AD, Shapiro SD, Xiao G, and Qu Z
- Subjects
- Animals, Basic-Leucine Zipper Transcription Factors metabolism, Bone Marrow Cells cytology, Bone Marrow Cells metabolism, Cells, Cultured, Macrophages cytology, Mice, Monocytes cytology, Monocytes metabolism, STAT3 Transcription Factor metabolism, Adaptor Proteins, Signal Transducing metabolism, LIM Domain Proteins metabolism, Lung Neoplasms metabolism, Macrophages metabolism, Reactive Oxygen Species metabolism
- Abstract
One of the most fundamental and challenging questions in the field of cancer is how immunity is transformed from tumor immunosurveillance to tumor-promoting inflammation. Here, we identified the tumor suppressor PDZ-LIM domain-containing protein 2 (PDLIM2) as a checkpoint of alveolar macrophages (AMs) important for lung tumor suppression. During lung tumorigenesis, PDLIM2 expression in AMs is downregulated by ROS-activated transcription repressor BTB and CNC homology 1 (BACH1). PDLIM2 downregulation leads to constitutive activation of the transcription factor STAT3, driving AM protumorigenic polarization/activation and differentiation from monocytes attracted from the circulation to suppress cytotoxic T lymphocytes and promote lung cancer. PDLIM2 downregulation also decreases AM phagocytosis. These findings establish ROS/BACH1/PDLIM2/STAT3 as a signaling pathway driving AMs for lung tumor promotion.
- Published
- 2021
- Full Text
- View/download PDF
32. Dual but not single PD-1 or TIM-3 blockade enhances oncolytic virotherapy in refractory lung cancer.
- Author
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Sun F, Guo ZS, Gregory AD, Shapiro SD, Xiao G, and Qu Z
- Subjects
- Animals, Cell Line, Tumor transplantation, Combined Modality Therapy methods, Female, Hepatitis A Virus Cellular Receptor 2 antagonists & inhibitors, Hepatitis A Virus Cellular Receptor 2 immunology, Humans, Injections, Intralesional, Injections, Intravenous, Lung Neoplasms chemically induced, Lung Neoplasms immunology, Lymphocyte Activation, Mice, Neoplasms, Experimental chemically induced, Neoplasms, Experimental immunology, Oncolytic Viruses immunology, Programmed Cell Death 1 Receptor antagonists & inhibitors, Programmed Cell Death 1 Receptor immunology, Tumor Microenvironment drug effects, Tumor Microenvironment immunology, Urethane administration & dosage, Urethane toxicity, Antineoplastic Agents, Immunological administration & dosage, Immunotherapy methods, Lung Neoplasms therapy, Neoplasms, Experimental therapy, Oncolytic Virotherapy methods
- Abstract
Background: Programmed cell death 1 (PD-1)/programmed death ligand 1 (PD-L1) blockade therapy fails in the majority of patients with cancer. Oncolytic viruses represent a new class of therapeutic agents, yet the therapeutic efficacy is still disappointing. Moreover, intratumoral injection of viruses is the main approach and preclinical studies mainly employ syngeneic or xenograft models., Methods: Use an endogenous mouse lung cancer model that faithfully recapitulates human lung cancer, and various in vivo, ex vivo and in vitro assays, to investigate the efficacy, mechanism of action and resistance of systemically administered oncolytic vaccinia virus (oVV), immunotherapy and their combination, to find an effective therapy for refractory lung cancer., Results: Resembling human lung cancers, the majority of which are largely resistant to PD-1/PD-L1 blockade and with decreased PD-L1 expression and T-cell activation by our analysis, urethane-induced endogenous lung tumors in mice show reduced PD-L1 expression, low tumor-infiltrating lymphocytes and innate resistance to PD-1/PD-L1 blockade. Intravenous administration of oVV has efficacy and synergizes with simultaneous but not single blockade of PD-1 and T-cell immunoglobulin and mucin-domain containing-3 (TIM-3) in this cancer model. Besides direct tumor cell killing, oVV induces T-cell lung recruitment, tumor infiltration, along with expression of PD-1 and TIM-3 on T cells and PD-1 and TIM-3 ligands on tumor cells and tumor-associated immune cells. Blockade of PD-1 or TIM-3 also causes their mutual induction on T cells., Conclusions: While systemic administration of oVV shows efficacy in lung cancer by killing tumor cells directly and recruiting and activating T cells for indirect tumor killing, its induction of PD-1 and TIM-3 on T cells and PD-1 and TIM-3 ligands on tumors and tumor-associated immune cells as well as mutual induction of PD-1 or TIM-3 on T cells by their blockade restricts the efficacy of oVV or its combination with single PD-1 or TIM-3 blockade. The triple combination therapy is more effective for refractory lung cancer, and possibly other cold cancers as well., Competing Interests: Competing interests: No, there are no competing interests., (© Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2020
- Full Text
- View/download PDF
33. Automated Measurement of Blood Vessels in Tissues from Microscopy Images.
- Author
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Kelly NJ, Dandachi N, Goncharov DA, Pena AZ, Radder JE, Gregory AD, Lai YC, Leme AS, Gladwin MT, Goncharova EA, St Croix CM, and Shapiro SD
- Subjects
- Animals, Automation, Male, Mice, Inbred C57BL, Rats, Sprague-Dawley, Reproducibility of Results, Vascular Remodeling, Blood Vessels anatomy & histology, Image Processing, Computer-Assisted methods, Microscopy methods
- Abstract
The quantification of tunica media thickness in histological cross sections is a ubiquitous exercise in cardiopulmonary research, yet the methods for quantifying medial wall thickness have never been rigorously examined with modern image analysis tools. As a result, inaccurate and cumbersome manual measurements of discrete wall regions along the vessel periphery have become common practice for wall thickness quantification. The aim of this study is to introduce, validate, and facilitate the use of an improved method for medial wall thickness quantification. We describe a novel method of wall thickness calculation based on image skeletonization and compare its results to those of common techniques. Using both theoretical and empirical approaches, we demonstrate the accuracy and superiority of the skeleton-based method for measuring wall thickness while discussing its interpretation and limitations. Finally, we present a new freely available software tool, the VMI Calculator, to facilitate wall thickness measurements using our novel method. © 2016 by John Wiley & Sons, Inc., (Copyright © 2016 John Wiley & Sons, Inc.)
- Published
- 2016
- Full Text
- View/download PDF
34. Neutrophil elastase promotes myofibroblast differentiation in lung fibrosis.
- Author
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Gregory AD, Kliment CR, Metz HE, Kim KH, Kargl J, Agostini BA, Crum LT, Oczypok EA, Oury TA, and Houghton AM
- Subjects
- Animals, Cell Differentiation, Cell Proliferation, Disease Models, Animal, Gene Expression Regulation, Humans, Insulin Receptor Substrate Proteins genetics, Insulin Receptor Substrate Proteins immunology, Leukocyte Elastase genetics, Leukocyte Elastase immunology, Lung immunology, Lung pathology, Mice, Myofibroblasts immunology, Myofibroblasts pathology, Neutrophils immunology, Neutrophils pathology, Phosphatidylinositol 3-Kinases genetics, Phosphatidylinositol 3-Kinases immunology, Proto-Oncogene Proteins c-akt genetics, Proto-Oncogene Proteins c-akt immunology, Pulmonary Emphysema genetics, Pulmonary Emphysema immunology, Pulmonary Emphysema pathology, Pulmonary Fibrosis genetics, Pulmonary Fibrosis immunology, Pulmonary Fibrosis pathology, Signal Transduction, Leukocyte Elastase metabolism, Lung enzymology, Myofibroblasts enzymology, Neutrophils enzymology, Pulmonary Emphysema enzymology, Pulmonary Fibrosis enzymology
- Abstract
IPF is a progressive lung disorder characterized by fibroblast proliferation and myofibroblast differentiation. Although neutrophil accumulation within IPF lungs has been negatively correlated with outcomes, the role played by neutrophils in lung fibrosis remains poorly understood. We have demonstrated previously that NE promotes lung cancer cell proliferation and hypothesized that it may have a similar effect on fibroblasts. In the current study, we show that NE(-/-) mice are protected from asbestos-induced lung fibrosis. NE(-/-) mice displayed reduced fibroblast and myofibroblast content when compared with controls. NE directly both lung fibroblast proliferation and myofibroblast differentiation in vitro, as evidenced by proliferation assays, collagen gel contractility assays, and αSMA induction. Furthermore, αSMA induction occurs in a TGF-β-independent fashion. Treatment of asbestos-recipient mice with ONO-5046, a synthetic NE antagonist, reduced hydroxyproline content. Thus, the current study points to a key role for neutrophils and NE in the progression of lung fibrosis. Lastly, the study lends rationale to use of NE-inhibitory approaches as a novel therapeutic strategy for patients with lung fibrosis., (© Society for Leukocyte Biology.)
- Published
- 2015
- Full Text
- View/download PDF
35. Tumor-associated neutrophils: new targets for cancer therapy.
- Author
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Gregory AD and Houghton AM
- Subjects
- Animals, Humans, Neutrophils enzymology, Tumor Microenvironment, Molecular Targeted Therapy methods, Neoplasms drug therapy, Neoplasms immunology, Neutrophils drug effects, Neutrophils immunology
- Abstract
Studies have begun to emerge showing critical roles for neutrophils in tumorigenesis. Neutrophils can have a significant impact on the tumor microenvironment via their production of cytokines and chemokines, which influence inflammatory cell recruitment and activation. Additionally, products secreted from neutrophils, such as reactive oxygen species and proteinases, have defined and specific roles in regulating tumor cell proliferation, angiogenesis, and metastasis. Although evidence suggests that neutrophils act in a decidedly protumor capacity in vivo, recent studies indicate that neutrophils may be manipulated to exhibit cytotoxicity against tumors. Herein, we explore the idea of targeting tumor-associated neutrophils as a means of antitumor therapy and the important ramifications such manipulation could pose to host tissues.
- Published
- 2011
- Full Text
- View/download PDF
36. Systemic levels of G-CSF and interleukin-6 determine the angiogenic potential of bone marrow resident monocytes.
- Author
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Gregory AD, Capoccia BJ, Woloszynek JR, and Link DC
- Subjects
- Adoptive Transfer, Animals, Hindlimb blood supply, Ischemia, Mice, Mice, Inbred C57BL, STAT3 Transcription Factor metabolism, Bone Marrow Cells physiology, Granulocyte Colony-Stimulating Factor physiology, Interleukin-6 physiology, Monocytes physiology, Neovascularization, Physiologic
- Abstract
There is considerable interest in the potential of cell-based approaches to mediate therapeutic angiogenesis for acute and chronic vascular syndromes. Using a mouse model of HLI, we showed previously that adoptive transfer of a small number of donor monocytes enhanced revascularization significantly. Herein, we provide data suggesting that the BM resident monocytes sense systemic signals that influence their future functional capacity. Specifically, following induction of distant ischemia, the angiogenic capacity of BM resident monocytes is reduced markedly. We provide evidence that G-CSF and IL-6 represent such "conditioning" signals. Systemic levels of G-CSF and IL-6 are increased significantly following induction of HLI. Accordingly, BM resident monocytes from ischemic mice exhibited increased pSTAT3 and STAT3 target gene expression. Finally, G-CSFR(-/-) and IL-6(-/-) mice were resistant to the deleterious effects of ischemic conditioning on monocyte angiogenic potential. RNA expression profiling suggested that ischemia-conditioned monocytes in the BM up-regulate the well-described M2 polarization markers Chi3l4 and Lrg1. Consistent with this observation, M2-skewed monocytes from SHIP(-/-) mice also had impaired angiogenic capacity. Collectively, these data show that G-CSF and IL-6 provide signals that determine the angiogenic potential of BM resident monocytes.
- Published
- 2010
- Full Text
- View/download PDF
37. Recruitment of the inflammatory subset of monocytes to sites of ischemia induces angiogenesis in a monocyte chemoattractant protein-1-dependent fashion.
- Author
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Capoccia BJ, Gregory AD, and Link DC
- Subjects
- Adoptive Transfer, Animals, Bone Marrow immunology, Bone Marrow pathology, Enzyme-Linked Immunosorbent Assay, Flow Cytometry, Fluorescent Antibody Technique, Mice, Mice, Inbred C57BL, Mice, Knockout, Receptors, CCR2 physiology, Reperfusion, Chemokine CCL2 physiology, Hindlimb blood supply, Inflammation immunology, Ischemia physiopathology, Monocytes physiology, Neovascularization, Physiologic
- Abstract
There is accumulating evidence that delivery of bone marrow cells to sites of ischemia by direct local injection or mobilization into the blood can stimulate angiogenesis. This has stimulated tremendous interest in the translational potential of angiogenic cell population(s) in the bone marrow to mediate therapeutic angiogenesis. However, the mechanisms by which these cells stimulate angiogenesis are unclear. Herein, we show that the inflammatory subset of monocytes is selectively mobilized into blood after surgical induction of hindlimb ischemia in mice and is selectively recruited to ischemic muscle. Adoptive-transfer studies show that delivery of a small number of inflammatory monocytes early (within 48 h) of induction of ischemia results in a marked increase in the local production of MCP-1, which in turn, is associated with a secondary, more robust wave of monocyte recruitment. Studies of mice genetically deficient in MCP-1 or CCR2 indicate that although not required for the early recruitment of monocytes, the secondary wave of monocyte recruitment and subsequent stimulation of angiogenesis are dependent on CCR2 signaling. Collectively, these data suggest a novel role for MCP-1 in the inflammatory, angiogenic response to ischemia.
- Published
- 2008
- Full Text
- View/download PDF
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