Search

We describe a new species, Didymocarpus janakiae Rhuthuparna & V.Gowda from the eastern Himalayas of India. We provide a detailed description of the species' morphology, diagnostic characters, and colour photographs to support its classification as a new taxon. The new species shows morphological affinities with D. middletonii Souvann., Soulad. & Tagane, D.cinereus D.Don, and D. punduanus var. pulchrus (C. B. Clarke) Su.Datta & B.K.Sinha. It is similar to D. middletonii in its calyx shape but can be distinguished by its glabrous calyx and glandular hairy corolla (versus calyx sparsely covered with multi‐cellular hairs and glabrous corolla). Similarly, it resembles D. punduanus var. pulchrus and D. cinereus D.Don in the shape and purplish colour of the corolla, but D. janakiae can be distinguished from these two species by its urceolate calyx (versus campanulate), and longer calyx tube (6.7–10.4 mm versus ca 6 mm in D. cinereus and 3–6 mm in D. punduanus var. pulchrus). Currently D. janakiae is only known from its type locality, therefore we assess it as Critically Endangered as per the IUCN guidelines. [ABSTRACT FROM AUTHOR]

Premise: Cytogenetic traits such as an organism's chromosome number and genome size are taxonomically critical as they are instrumental in defining angiosperm diversity. Variations in these traits can be traced to evolutionary processes such as polyploidization, although geographic variations across cytogenetic traits remain underexplored. In the pantropical monocot family Zingiberaceae (~1500 species), cytogenetic traits have been well documented; however, the role of these traits in shaping taxonomic diversity and biogeographic patterns of gingers is not known. Methods: A time‐calibrated Bayesian phylogenetic tree was constructed for 290 taxa covering three of the four subfamilies in Zingiberaceae. We tested models of chromosome number and genome size evolution within the family and whether lineage age, taxonomic diversity, and distributional range explain the variations in the cytogenetic traits. Tests were carried out at two taxonomic ranks: within Zingiberaceae and within genus Hedychium using correlations, generalized linear models and phylogenetic least square models. Results: The most frequent changes in chromosome number within Zingiberaceae were noted to be demi‐polyploidization and polyploidization (~57% of the time), followed by ascending dysploidy (~27%). The subfamily Zingiberoideae showed descending dysploidy at its base, while Alpinioideae showed polyploidization at its internal nodes. Although chromosome counts and genome sizes did not corroborate with each other, suggesting that they are not equivalent; higher chromosome number variations and higher genome size variations were associated with higher taxonomic diversity and wider biogeographic distribution. Conclusions: Within Zingiberaceae, multiple incidences of polyploidization were discovered, and cytogenetic events appear to have reduced the genome sizes and increased taxonomic diversity, distributional ranges and invasiveness. [ABSTRACT FROM AUTHOR]

The fundamental value of universal nomenclatural systems in biology is that they enable unambiguous scientific communication. However, the stability of these systems is threatened by recent discussions asking for a fairer nomenclature, raising the possibility of bulk revision processes for "inappropriate" names. It is evident that such proposals come from very deep feelings, but we show how they can irreparably damage the foundation of biological communication and, in turn, the sciences that depend on it. There are four essential consequences of objective codes of nomenclature: universality, stability, neutrality, and transculturality. These codes provide fair and impartial guides to the principles governing biological nomenclature and allow unambiguous universal communication in biology. Accordingly, no subjective proposals should be allowed to undermine them. [ABSTRACT FROM AUTHOR]

We describe six new species in the genus Globba L.: Globba corniculata sp. nov., Globba paschimbengalensis sp. nov., Globba polymorpha sp. nov., Globba tyrnaensis sp. nov., Globba janakiae sp. nov., and Globba yadaviana sp. nov. collected from the Indian part of the Eastern Himalayas (West Bengal) and Northeast India. We provide a detailed morphological description of all six species along with photographic plates, distribution maps, and tentative conservation assessments. We also provide a dichotomous identification key for all the Indian Globba species and discuss the newly described species in relation to those that are morphologically similar to them. Finally, we highlight the taxonomic collection challenges in the ecologically sensitive Eastern Himalayas and Northeast regions of India. [ABSTRACT FROM AUTHOR]

Premise: Hedychium J. Koenig (Zingiberaceae) is endemic to the Indo‐Malayan Realm and is known for its colorful and fragrant flowers. Historically, two different pollination syndromes characterize Hedychium: diurnal or bird pollination, and nocturnal or moth pollination. In this study, we aim to understand the evolution of nocturnal and diurnal flowers, and to test its putative association with lineage diversification in Hedychium. Methods: A molecular tree of Hedychium was used as a scaffold upon which we estimated ancestral character states, phylogenetic signals, and correlations for certain categorical and continuous floral traits. Furthermore, we used phylomorphospace and trait‐dependent diversification rate estimation analyses to understand phenotypic evolution and associated lineage diversification in Hedychium. Results: Although floral color and size lacked any association with specific pollinators, white or pale flowers were most common in the early branching clades when compared to bright‐colored flowers, which were more widely represented in the most‐derived clade IV. Five categorical and two continuous characters were identified to have informative evolutionary patterns, which also emphasized that ecology may have played a critical role in the diversification of Hedychium. Conclusions: From our phylogenetic analyses and ecological observations, we conclude that specializations in pollinator interactions are rare in the hyperdiverse clade IV, thus challenging the role of both moth‐specialization and bird‐specialization as central factors in the diversification of Hedychium. However, our results also suggest that clade III (predominantly island clade) may show specializations, and future studies should investigate ecological and pollinator interactions, along with inclusion of new traits such as floral fragrance and anthesis time. [ABSTRACT FROM AUTHOR]

The article emphasizes the urgent need to address ecological challenges in India and Asia by preserving entire biogeographical regions. Topics include redefining taxonomy to highlight evolutionary significance, the perception of botany as a boring subject, and the importance of modernizing botanical gardens as science centers for effective outreach and education.

A new gesneriad species, Didymocarpus vickifunkiae is described here from the Indo-Burma biodiversity hotspot. The new species is morphologically similar to D. aureoglandulosus, but differs from it in having a corolla tube with indumentum, eglandular and ovate to oblanceolate bracteoles, slightly broader calyx lobes, and a bearded anther. We provide a detailed morphological description of the newly described species along with images and compare it with species that are morphologically similar to it. Here, we also lectotypify D. aureoglandulosus and provide a brief history on its collection and taxonomy. Finally, we provide a dichotomous identification key for all the Didymocarpus species from Mizoram, India. [ABSTRACT FROM AUTHOR]

In a recent research article by Pace et al. (2019) , the authors claimed to have used information from phenology, morphology and molecular phylogenetics in their nomenclatural review of the Spiranthes sinensis complex. However, there are several scientific and botanical nomenclature issues with the Pace et al. (2019) paper in addition to its many errors and misinformation, which can be severely misleading and have the potential to affect our understanding of the highly complex Asian Spiranthes group. Here, we compare and critique their study in light of our study published prior to the article in the Botanical Journal of the Linnean Society. We suggest that the authors should have resorted to improved and new molecular data and a truly integrative analysis to support: (1) re-circumscription of the S. sinensis species complex for each of the six species they recognized, and the treatment of S. hongkongensis as a hybrid; and (2) all the new synonymies they proposed for Asian Spiranthes. [ABSTRACT FROM AUTHOR]

Premise: Statistical methods used by most morphologists to validate species boundaries (such as principal component analysis [PCA] and non‐metric multidimensional scaling [nMDS]) are limiting because these methods are mostly used as visualization methods, and because the groups are identified by taxonomists (i.e., supervised), adding human bias. Here, we use a spectral clustering algorithm for the unsupervised discovery of species boundaries followed by the analysis of the cluster‐defining characters. Methods: We used spectral clustering, nMDS, and PCA on 16 morphological characters within the genus Hedychium to group 93 individuals from 10 taxa. A radial basis function kernel was used for the spectral clustering with user‐specified tuning values (gamma). The goodness of the discovered clusters using each gamma value was quantified using eigengap, a normalized mutual information score, and the Rand index. Finally, mutual information–based character selection and a t‐test were used to identify cluster‐defining characters. Results: Spectral clustering revealed five, nine, and 12 clusters of taxa in the species complexes examined here. Character selection identified at least four characters that defined these clusters. Discussion: Together with our proposed character analysis methods, spectral clustering enabled the unsupervised discovery of species boundaries along with an explanation of their biological significance. Our results suggest that spectral clustering combined with a character selection analysis can enhance morphometric analyses and is superior to current clustering methods for species delimitation. [ABSTRACT FROM AUTHOR]

Here we report the rediscovery of four endemic gesneriads from the state of Mizoram, India, after a span of 86 to 90 years since their last collection. The four species belong to the genus Didymocarpus Wall. and they are: D. adenocarpus, D. lineicapsa, D. parryorum, and D. wengeri. We present revised morphological descriptions, photographs, and designate lectotypes for D. parryorum and D. wengeri. During our study we came across several discrepancies between morphological characters assigned to these four species in the protologue and morphological characters present (or absent) in the type specimens and in plants recollected by us. We list these discrepancies in a section titled 'amendments to protologue'. Based on the high endemicity and critical conservation status of all the four rediscovered species, we suggest that floristic studies along with large-scale biogeographic studies should be prioritized in the Indo-Burmese region. [ABSTRACT FROM AUTHOR]

Premise: We present a low‐cost, battery‐operated, portable pump, "FloPump," which allows regulated air sampling for the study of volatile organic compounds (VOCs). VOCs are routinely investigated in applications such as atmospheric chemistry, agriculture, and fragrance biology. Methods and Results: We compared the performance of FloPump with the Supelco pump in collecting VOCs using two test samples: guava fruit (Psidium guajava) and a perfume. The sampling and identification of volatiles was carried out using a dynamic headspace sampling method followed by gas chromatography–mass spectrometry. We show that the sampling efficiency of FloPump is comparable to the commercial pump, and at an affordable cost of ~US$115 (~86% cheaper), it provides a viable option for researchers interested in sampling volatiles on a constrained budget. Conclusions: Accurate air sampling is critical for the study of VOCs. We propose that FloPump will make air sampling more affordable, thus encouraging studies of VOCs. [ABSTRACT FROM AUTHOR]

We describe Hedychium ziroense sp. nov. from Northeast India (NE India) which was discovered during one of our recent botanical explorations in Arunachal Pradesh. We provide detailed morphological comparison of this species with four other Hedychium species (H. griersonianum R.M.Sm., H. ellipticum Buch.-Ham. ex Sm., H. gomezianum Wall. and H. yunnanense Gagnep.), with which it shares some morphological similarities. The new species is characterised by a dense cylindrical spike, pubescent rachis, folded bracts, 2-3 flowers per cincinnus, deeply cleft labellum and a distinctive late monsoonal flowering phenology from August to September. [ABSTRACT FROM AUTHOR]

Spiranthes (∼36 species, Orchidaceae) is a small genus with a global distribution. It has a center of diversity in North America with only a few species occurring in Asia. This study focuses on the Asian Spiranthes with an emphasis on understanding their biogeographic relationships and species delimitations using molecular markers. Our phylogenetic trees based on nuclear (ITS) and chloroplast ( trnL-trnLF , matK and trnS-G ) sequences from samples across their range in Asia revealed the Asian Spiranthes are monophyletic. Ancestral area optimization suggested that North America forms the ancestral region for the Asian Spiranthes rather than Europe suggesting that they originated from a single long-distance dispersal event. Our study also revealed the presence of a cryptic species S. himalayensis , which was discovered based on molecular data thus emphasizing the importance of wide geographical sampling in phylogenetic studies. Sequences of cloned ITS provided support for the hypothesis that natural hybridization between S. sinensis and the newly described S. himalayensis resulted in the allotetraploid S. hongkongensis , with S. himalayensis as the paternal parent. One of the species complexes known in Asia is the S. sinensis complex, which shows a wide occurrence and is known for local geographical variants. Some of these variants have been described as new species in Australia and New Zealand. Our studies show that all the sampled variants including the Australian and New Zealand species show monophyly despite having long branches. This suggests that there may be high rates of gene flow between the geographically distinct forms resulting in lack of species resolution within the S. sinensis complex. [ABSTRACT FROM AUTHOR]

The budgerigar (Melopsittacus undulatus) is one of the most widely studied parrot species, serving as an excellent animal model for behavior and neuroscience research. Until recently, it was unknown how sexual differences in the behavior, physiol- ogy, and development of organisms are regulated by differential gene expression. MicroRNAs (miRNAs) are endogenous short non-coding RNA molecules that can post-transcriptionally regulate gene expression and play a critical role in gonadal differentiation as well as early development of animals. However, very little is known about the role gonadal miRNAs play in the early development of birds. Research on the sex-biased expression of miRNAs in avian gonads are limited, and little is known about M. undulatus. In the current study, we sequenced two small non-coding RNA libraries made from the gonads of adult male and female budgerigars using Illumina paired-end sequencing technology. We obtained 254 known and 141 novel miRNAs, and randomly validated five miRNAs. Of these, three miRNAs were differentially expressed miRNAs and 18 miRNAs involved in sexual differentiation as determined by functional analysis with GO annotation and KEGG pathway analysis. In conclusion, this work is the first report of sex-biased miRNAs expression in the budgerigar, and provides additional sequences to the avian miRNAome database which will foster further functional genomic research. [ABSTRACT FROM AUTHOR]

The authors introduce the term facultative vivipary for the first time in gingers and elaborate on this reproductive strategy. Four new observations of facultative vivipary are reported in the genus Hedychium which were discovered during botanical explorations by the authors in Northeast India (NE India) over the past three years. The viviparous taxa are H. marginatum C.B.Clarke, H. speciosum var. gardnerianum (Ker Gawl.) Sanoj & M.Sabu (previously, H. gardnerianum Sheppard ex Ker Gawl.), H. thyrsiforme Buch.- Ham. ex Sm. and H. urophyllum G.Lodd. The authors also attempt to summarise the occurrence of vivipary in the family Zingiberaceae from published reports and to clarify a taxonomic misidentification in a previously known report of vivipary in Hedychium elatum. [ABSTRACT FROM AUTHOR]

Two new species of gingers (Zingiberaceae), Globba sherwoodiana W.J. Kress & V. Gowda sp. nov., and Curcuma arracanensis W.J. Kress & V. Gowda sp. nov., from Myanmar are described. The new species of Globba is currently only known in cultivation and is commonly grown and sold in markets in Myanmar. In contrast C. arracanensis has been collected from a single restricted region in the cloud forests of the Rakhine Yoma above the Bay of Bengal in western Myanmar. Three-locus DNA barcodes were generated as aids for the identification of the two new species. [ABSTRACT FROM AUTHOR]

The article offers information on wasteland development and restoration are major themes in many conservation-specific studies across the world and many recent schemes in India have focused on wasteland developments as well. Topics include the administrative and technical involvement of the Government of India in wasteland development has been big enough and dedicating Integrated Wasteland Development Programme under the Department of Land Resources.

Angiosperms possess various strategies to ensure reproductive success, such as stylar polymorphisms that encourage outcrossing. Here, we investigate the genetic basis of one such dimorphism that combines both temporal and spatial separation of sexual function, termed flexistyly. It is a floral strategy characterised by the presence of two morphs that differ in the timing of stylar movement. We performed a de novo assembly of the genome of Alpinia nigra using high-depth genomic sequencing. We then used Pool-seq to identify candidate regions for flexistyly based on allele frequency or coverage differences between pools of anaflexistylous and cataflexistylous morphs. The final genome assembly size was 2 Gb, and showed no evidence of recent polyploidy. The Pool-seq did not reveal large regions with high FST values, suggesting large structural chromosomal polymorphisms are unlikely to underlie differences between morphs. Similarly, no region had a 1:2 mapping depth ratio which would be indicative of hemizygosity. We propose that flexistyly is governed by a small genomic region that might be difficult to detect with Pool-seq, or a complex genomic region that proved difficult to assemble. Our genome will be a valuable resource for future studies of gingers, and provides the first steps towards characterising this complex floral phenotype. [ABSTRACT FROM AUTHOR]

• Premise of the study: Microsatellite loci were developed to characterize genetic variation and population subdivision in Heliconia bihai and H. caribaea from the Caribbean Islands. • Methods and Results: A total of 13 new microsatellite markers were developed and characterized in the two Caribbean heliconias. Di-, tri-, and tetranucleotide repeats were identifi ed with one to 17 alleles per locus, and the observed heterozygosity ranged from 0.13 to 0.87. Additionally, cross-species amplifi cation was successful in eight out of 13 loci. • Conclusions: The microsatellite loci developed have discriminatory potential to be used in genetic characterizations of Caribbean Heliconia . Both H. bihai and H. caribaea are known to have adaptive interactions with their hummingbird pollinators, and the characterized microsatellite markers will be used to study mating system, genetic structure, and phylogeographic patterns in Caribbean Heliconia . [ABSTRACT FROM AUTHOR]

Heat shock proteins of 70 kDa (Hsp70s) partner with structurally diverse Hsp40s (J proteins), generating distinct chaperone networks in various cellular compartments that perform myriad housekeeping and stress-associated functions in all organisms. Plants, being sessile, need to constantly maintain their cellular proteostasis in response to external environmental cues. In these situations, the Hsp70:J protein machines may play an important role in fine-tuning cellular protein quality control. Although ubiquitous, the functional specificity and complexity of the plant Hsp70:J protein network has not been studied. Here, we analyzed the J protein network in the cytosol of Arabidopsis thaliana and using yeast genetics, show that the functional specificities of most plant J proteins in fundamental chaperone functions are conserved across long evolutionary timescales. Detailed phylogenetic and functional analysis revealed that increased number, regulatory differences, and neofunctionalization in J proteins together contribute to the emerging functional diversity and complexity in the Hsp70:J protein network in higher plants. Based on the data presented, we propose that higher plants have orchestrated their "chaperome," especially their J protein complement, according to their specialized cellular and physiological stipulations. [ABSTRACT FROM AUTHOR]

The budgerigar ( Melopsittacus undulatus ) is one of the most widely studied parrot species, serving as an excellent animal model for behavior and neuroscience research. Until recently, it was unknown how sexual differences in the behavior, physiology, and development of organisms are regulated by differential gene expression. MicroRNAs (miRNAs) are endogenous short non-coding RNA molecules that can post-transcriptionally regulate gene expression and play a critical role in gonadal differentiation as well as early development of animals. However, very little is known about the role gonadal miRNAs play in the early development of birds. Research on the sex-biased expression of miRNAs in avian gonads are limited, and little is known about M. undulatus . In the current study, we sequenced two small non-coding RNA libraries made from the gonads of adult male and female budgerigars using Illumina paired-end sequencing technology. We obtained 254 known and 141 novel miRNAs, and randomly validated five miRNAs. Of these, three miRNAs were differentially expressed miRNAs and 18 miRNAs involved in sexual differentiation as determined by functional analysis with GO annotation and KEGG pathway analysis. In conclusion, this work is the first report of sex-biased miRNAs expression in the budgerigar, and provides additional sequences to the avian miRNAome database which will foster further functional genomic research., Competing Interests: The authors declare there are no competing interests.