81 results on '"Gipson, J"'
Search Results
2. Alternative Locales for the Health Promotion of African American Men : A Survey of African American Men in Chicago Barbershops
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Murphy, A. B., Moore, N. J., Wright, M., Gipson, J., Keeter, M., Cornelious, T., Reed, D., Russell, J., Watson, K. S., and Murray, M.
- Published
- 2017
3. P006 - PUTTING THE POWER IN PATIENTS’ HANDS: A COMPARISON OF PERSON-CENTERED ABORTION CARE BETWEEN NO-TEST TELEMEDICINE ABORTION AND CLINIC-BASED MEDICATION ABORTION
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Patil, R, Gipson, J, Soun, B, Kao Nakphong, M, and Sudhinaraset, M
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- 2023
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- View/download PDF
4. Comparison of Realizations of the Terrestrial Reference Frame
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Ma, C, Macmillan, D, Bolotin, S, Le Bail, K, Gordon, D, and Gipson, J
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Geosciences (General) - Abstract
IGN and DGFI both generated realizations of the terrestrial reference frame under the auspices of the IERS from combination of the same space geodetic data. We compared the IGN and DGFI TRFs with a GSFC CALC/SOLVE TRF. WRMS position and velocity differences for the 40 most frequently observed sites were 2-3 mm and 0.3-0.4 mm/year. There was a scale difference of 0.39/0.09 ppb between the IGN/DGFI realizations and the GSFC solution. When we fixed positions and velocities to either the IGN or DGFI values in CALC/SOLVE solutions, the resulting EOP estimates were not significantly different from the estimates from a standard TRF solution.
- Published
- 2015
5. P086Documentation status and contraceptive use among women in california
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Khan, AG, Sudhinaraset, M, and Gipson, J
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- 2022
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6. P068Navigating uncertainty: (In)fertility and reproductive planning
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Bornstein, M, Church, A, Gipson, J, and Norris, AH
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- 2022
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7. Theory and Realization of Global Terrestrial Reference Systems
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Ma, C, Bolotin, S, Gipson, J, Gordon, D, Le Bail, K, and MacMillan, D
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Earth Resources And Remote Sensing - Abstract
Comparison of realizations of the terrestrial reference frame. IGN and DGFI both generated realizations of the terrestrial reference frame under the auspices of the IERS from combination of the same space geodetic data. We examined both results for VLBI sites using the full geodetic VLBI data set with respect to site positions and velocities and time series of station positions, baselines and Earth orientation parameters. One of the difficulties encountered was matching episodic breaks and periods of non-linear motion of the two realizations with the VLBI models. Our analysis and conclusions will be discussed.
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- 2010
8. Galactocentric acceleration in VLBI analysis
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MacMillan, D., Fey, A., Gipson, J., Gordon, D., Jacobs, C., Krásná, H., Malkin, Z., Titov, O., Wang, Gang, Xu, M., Lambert, Sébastien, Systèmes de Référence Temps Espace (SYRTE), Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
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[SDU.ASTR]Sciences of the Universe [physics]/Astrophysics [astro-ph] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2019
9. A Snapshot of Modalities for Recruitment of African Americans for an Intensive Behavioral Therapy Weight Management Intervention during the COVID-19 Pandemic
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Navarro, C., Reese-Smith, J., Lemacks, J., Greer, T., Aras, S., Madson, M., Gipson, J., Buck, B., and Johnson, M.
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- 2022
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10. Evaluation of Participant and Health Coach Perceptions of Motivational Counseling Fidelity in the Move & Eat 2 Live Program
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Lawrick, C., Reese-Smith, J., Lemacks, J., Greer, T., Aras, S., Madson, M., Gipson, J., Johnson, M., and Buck, B.
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- 2022
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11. El Nino, La Nina and VLBI Measured LOD
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Clark, Thomas A, Gipson, J. M, and Ma, C
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Geophysics - Abstract
VLBI is one of the most important techniques for measuring Earth orientation parameters (EOP), and is unique in its ability to make high accuracy measurements of UT1, and its time derivative, which is related to changes in the length of day, conventionally called LOD. These measurements of EOP give constraints on geophysical models of the solid-Earth, atmosphere and oceans. Changes in EOP are due either to external torques from gravitational forces, or to the exchange of angular momentum between the Earth, atmosphere and oceans. The effect of the external torques is strictly harmonic and nature, and is therefore easy to remove. We analyze an LOD time series derived from VLBI measurements with the goal of comparing this to predictions from AAM, and various ENSO indices. Previous work by ourselves and other investigators demonstrated a high degree of coherence between atmospheric angular momentum (AAM) and EOP. We continue to see this. As the angular momentum of the atmosphere increases, the rate of rotation of the Earth decreases, and vice versa. The signature of the ENSO is particularly strong. At the peak of the 1982-83 El Nino increased LOD by almost 1 ms. This was subsequently followed by a reduction in LOD of 0.75 ms. At its peak, in February of 1998, the 1997-98 El Nino increased LOD by 0.8 msec. As predicted at the 1998 Spring AGU, this has been followed by an abrupt decrease in LOD which is currently -0.4 ms. At this time (August, 1998) the current ENSO continues to develop in new and unexpected ways. We plan to update our analysis with all data available prior to the Fall AGU.
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- 1998
12. Global Positions and Velocities from One Year of GPS Data
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Heflin, M. B, Blewitt, G, Jefferson, D, Vigue, Y, Webb, F, Zumberge, J, Argus, D, Gipson, J, Ma, C, and Clark, T
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Geophysics - Abstract
A generalized no-fiducial approach has been developed to obtain global positions and velocities without fixing any individual position or velocity components. The method used can be applied to any global geodetic technique and proceeds in three general steps. First, daily solutions derived with weak constraints are combined to yield one global set of positions and velocities. Second, 14 minimal constraints are applied to remove uncertainties due to the loosely defined reference frame. Third, transformation from one reference frame to another is accomplished with a 14 parameter transformation. One year of daily FLINN solutions, each made with data from about 40 sites, have been combined to yield our best fit global model...
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- 1993
13. Building a Better Democracy
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Printers, The Caxton, Gipson, J. H., and Milam, Carl H.
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- 1943
14. VizieR Online Data Catalog: VLBI ICRF2 (Fey+, 2015)
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Fey, A. L., Gordon, D., Jacobs, C. S., Ma, C., Gaume, R. A., Arias, E. F., Bianco, G., Boboltz, D. A., Bockmann, S., Bolotin, S., Charlot, P., Collioud, A., Engelhardt, G., Gipson, J., Gontier, A.-M., Heinkelmann, R., Kurdubov, S., Lambert, S., Lytvyn, S., Macmillan, D. S., Malkin, Z., Nothnagel, A., Ojha, R., Skurikhina, E., Sokolova, J., Souchay, J., Sovers, O. J., Tesmer, V., Titov, O., Wang, G., Zharov, V., and Pomies, Marie-Paule
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[SDU.ASTR.IM] Sciences of the Universe [physics]/Astrophysics [astro-ph]/Instrumentation and Methods for Astrophysic [astro-ph.IM] - Abstract
We present the second realization of the International Celestial Reference Frame (ICRF2) at radio wavelengths using nearly 30 years of Very Long Baseline Interferometry observations. The earliest observations used are from 1979 August and the latest are from 2009 March. ICRF2 consists of accurate positions of 295 new "defining" sources and positions of 3119 additional compact radio sources to densify the frame. ICRF2 has more than 5 times as many sources as ICRF1 (Ma et al. 1997, cat. I/251), is roughly 5-6 times more accurate, and is nearly twice as stable in the orientation of its axes.(3 data files).
- Published
- 2016
15. A mixed-methods study exploring the reproductive health perceptions, experiences and goals of women in methadone treatment
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Bornstein, M, Gipson, J, and Berger, A
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- 2018
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16. Demonstration of a Broadband Very Long Baseline Interferometer System: A New Instrument for High‐Precision Space Geodesy.
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Niell, A., Barrett, J., Burns, A., Cappallo, R., Corey, B., Derome, M., Eckert, C., Elosegui, P., McWhirter, R., Poirier, M., Rajagopalan, G., Rogers, A., Ruszczyk, C., SooHoo, J., Titus, M., Whitney, A., Behrend, D., Bolotin, S., Gipson, J., and Gordon, D.
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GEODESY ,VERY long baseline interferometers ,GEOPHYSICS ,TIME series analysis ,DATA acquisition systems - Abstract
A prototype broadband geodetic very long baseline interferometry system has been implemented, and measurements of the baseline length over approximately two years, between December 2014 and January 2017, have been made in the process of exercising the system, developing operational procedures, and assessing geodetic precision for the new broadband observing concept. In addition to developing a broadband signal chain and installing the instrumentation on both a new 12‐m antenna at the Goddard Geophysical and Astrophysical Observatory and the 18‐m Westford antenna at the Massachusetts Institute of Technology Haystack Observatory, it was necessary to develop new correlation and analysis procedures to process the four‐band, dual‐linear‐polarization data. A geodetic analysis of the data from 19 sessions that were observed during this period yielded a weighted root‐mean‐square deviation of the baseline length residuals about the weighted mean of 1.6 mm. These results validate several of the expectations set forth for the vision of the next‐generation geodetic very long baseline interferometry system. Key Points: We demonstrated the first broadband VLBI systems for high‐precision space geodesyWe developed procedures for data acquisition and analysis of the broadband geodetic dataWe generated the first VGOS baseline length time series [ABSTRACT FROM AUTHOR]
- Published
- 2018
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17. Assessing the Importance of Gender Roles in Couples’ Home-Based Sexual Health Services in Malawi
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Gipson, J. D., Muntifering, C. J., Chauwa, F. K., Taulo, F., Tsui, A. O., and Michelle Hindin
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Adult ,Male ,Health Knowledge, Attitudes, Practice ,Health Services Needs and Demand ,Malawi ,Focus Groups ,Home Care Services ,Article ,Interviews as Topic ,Sex Factors ,Sexual Partners ,Family Planning Services ,Humans ,Female ,Gender roles and gender issues, HIV/Aids, contraception, community-based programs and interventions, Malawi, Africa - Abstract
To more effectively address individuals’ and couples’ sexual and reproductive health needs, innovative service delivery strategies are being explored. These strategies are logistically and ethically complicated, considering prevailing gender inequalities in many contexts. We conducted an exploratory study to assess the acceptability of couples’ home-based sexual health services in Malawi. We collected qualitative data from six focus group discussions and 10 husband-wife indepth interviews to gain a more thorough understanding of how gender norms influence acceptability of couples’ sexual health services. Findings reveal that women are expected to defer to their husbands and may avoid conflict through covert contraceptive use and non-disclosure of HIV status. Many men felt that accessing sexual health services is stigmatizing, causing some to avoid services or to rely on informal information sources. Gender norms and attitudes toward existing services differentially impact men and women in this setting, influencing the perceived benefits of couples’ sexual health services (Afr J Reprod Health 2010; 14[4]: 63-73).
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- 2010
18. Recent Progress in the VLBI2010 Development
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Behrend, J., Boehm, J., Charlot, P., Clark, T., Corey, B., Gipson, J., Haas, R., Koyama, Y., MacMillan, D., Malkin, Z., Niell, A., Nilsson, T., Petrachenko, B., Rogers, A., Tuccari, G., Wresnik, J., Max-Planck-Institut für Radioastronomie (MPIFR), NVI, Inc., NASA Goddard Space Flight Center (GSFC), institut de geodesie et geophysique de Vienne (INSTITUT DE GEODESIE ET GEOPHYSIQUE), Institut de geodesie et geophysique, Laboratoire d'astrodynamique, d'astrophysique et d'aéronomie de bordeaux (L3AB), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Astrophysique de Bordeaux [Pessac] (LAB), Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Observatoire aquitain des sciences de l'univers (OASU), MIT Haystack Observatory, Massachusetts Institute of Technology (MIT), Onsala Space Observatory (OSO), Chalmers University of Technology [Göteborg], Kashima Space Technology Center, National Institute of Information and Communications Technology [Tokyo, Japan] (NICT), Pulkovo Observatory, Geodetic Survey Division, Istituto di Radioastronomia di Noto, and Istituto Nazionale di Astrofisica (INAF)
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[PHYS.ASTR.CO]Physics [physics]/Astrophysics [astro-ph]/Cosmology and Extra-Galactic Astrophysics [astro-ph.CO] ,[SDU.ASTR]Sciences of the Universe [physics]/Astrophysics [astro-ph] ,next generation VLBI2010 ,IVS ,geodetic VLBI ,Monte Carlo simulations - Abstract
chapter in book series "International Association of Geodesy Symposia" book "Observing our Changing Earth" ISBN 978-3-540-85425-8; International audience; From October 2003 to September 2005, the International VLBI Service for Geodesy and Astrometry (IVS) examined current and future requirements for geodetic VLBI, including all components from antennas to analysis. IVS Working Group 3 ‘VLBI 2010', which was tasked with this effort, concluded with recommendations for a new generation of VLBI systems. These recommendations were based on the goals of achieving 1 mm measurement accuracy on global baselines, performing continuous measurements for time series of station positions and Earth orientation parameters, and reaching a turnaround time from measurement to initial geodetic results of less than 24 hours. To realize these recommendations and goals, along with the need for low cost of construction and operation, requires a complete examination of all aspects of geodetic VLBI including equipment, processes, and observational strategies. Hence, in October 2005, the IVS VLBI2010 Committee (V2C) commenced work on defining the VLBI2010 system specifications. In this paper we give a summary of the recent progress of the VLBI2010 project.
- Published
- 2008
19. Are women in rural Malawi using their preferred contraceptive method?
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Huber, S, Garver, S, Gipson, J, Chapotera, G, and Norris, A
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- 2017
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20. Health, development and maternal bonding among children born following abortion denial and children born to women in the 5 years after they receive an abortion
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Foster, DG, Biggs, A, Raifman, S, Gipson, J, Kimport, K, and Rocca, C
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- 2017
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21. The Construction of ICRF2 and Its Impact on the Terrestrial Reference Frame.
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Gordon, D., Bail, K. Le, Ma, C., MacMillan, D., Bolotin, S., and Gipson, J.
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- 2014
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22. Comparison of Realizations of the Terrestrial Reference Frame.
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Ma, C., MacMillan, D., Bolotin, S., Le Bail, K., Gordon, D., and Gipson, J.
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- 2013
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23. Chloramine-induced methemoglobinemia in a hemodialysis patient.
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Fenves, Andrew Z., Gipson, J. Scott, Pancorvo, Carlos, Fenves, A Z, Gipson, J S, and Pancorvo, C
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METHEMOGLOBINEMIA , *HEMODIALYSIS , *CHLORAMINES , *DRUGS , *SULFONAMIDES - Abstract
Describes the case of a 55-year-old Latin American hemodialysis patient with chloramine-induced methemoglobinemia. Symptoms; Review of the water treatment system supplying the acute dialysis facility; Treatment of the patient with supplemental oxygen by facemask.
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- 2000
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24. Diurnal/semidiurnal polar motion excited by oceanic tidal angular momentum.
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Chao, B. F., Ray, R. D., Gipson, J. M., Egbert, G. D., and Ma, C.
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- 1996
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25. Earth rotation measurement yields valuable information about the dynamics of the Earth system.
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Clark, T. A., Ma, C., Ryan, J. W., Chao, B. F., Gipson, J. M., MacMillan, D. S., Vandenberg, Nancy R., Eubanks, T. M., and Niell, A. E.
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- 1998
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26. Sherlock Holmes: Among Those Missing.
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Gipson, J. H.
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LETTERS to the editor ,MYSTERY fiction - Abstract
Presents a letter to the editor about publishing of detective stories.
- Published
- 1940
27. From utong to misoprostol: preventing and managing pregnancy in Cebu, Philippines
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Gipson, J. and Avila, J.
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- 2008
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28. Greenbug Resistance to Organophosphorous Insecticides on the Texas High Plains
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Gipson, J. R., Schaefer, C. A., Teetes, G. L., Latham, E. E., and McIntyre, R. C.
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INSECTICIDES - Published
- 1975
29. Path-integral derivation of the chiral anomalies of Dirac fermions coupled to gauge and gravitational fields in even space-time dimensions
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Gipson, J
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- 1984
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30. Quantum solution of the Calogero system by the projection method
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Gipson, J
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- 1982
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31. Genome Sequence of Edwardsiella ictaluri 93-146, a Strain Associated with a Natural Channel Catfish Outbreak of Enteric Septicemia of Catfish.
- Author
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Williams, M. L., Gillaspy, A. F., Dyer, D. W., Thune, R. L., Waldbieser, G. C., Schuster, S. C., Gipson, J., Zaitshik, J., Landry, C., Banes, M. M., and Lawrence, M. L.
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EDWARDSIELLA , *CATFISHES , *GENOMICS , *FISHERIES - Abstract
Edwardsiella ictaluri is the cause of extensive mortalities and economic losses to the channel catfish industry of the southeast United States. Here we report the complete genome of Edwardsiella ictaluri 93-146. Whole-genome sequence analysis of E. ictaluri provides a tool for understanding the genomic regions specific to the species and the Edwardsiella genus. [ABSTRACT FROM AUTHOR]
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- 2012
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32. No benefit from the addition of low-dose ketamine infusion to standard evidence-based care of patients with multiple rib fractures.
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Macheel C, Farhat J, Gipson J, Lindbloom P, and West MA
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- Humans, Female, Male, Prospective Studies, Middle Aged, Adult, Infusions, Intravenous, Pain Measurement, Injury Severity Score, Treatment Outcome, Wounds, Nonpenetrating complications, Wounds, Nonpenetrating drug therapy, Pain Management methods, Fractures, Multiple, Aged, Rib Fractures complications, Ketamine administration & dosage, Analgesics administration & dosage, Analgesics therapeutic use
- Abstract
Background: Multiple rib fractures from blunt thoracic trauma cause significant morbidity. Optimal current management includes multimodal analgesia, pulmonary hygiene, and early mobilization. Low-dose ketamine infusion (LDKI) has been proposed as an adjunctive analgesic in this setting. A prior study reported decreased pain scores with LDKI in patients with multiple rib fractures. We hypothesized that LDKI would decrease morphine milligram equivalents (MMEs) in patients with multiple rib fractures., Methods: A prospective randomized placebo-controlled trial was performed in adult (18 years or older) patients with three or more rib fractures. A prestudy power analysis calculated an 80% chance of identifying a 15% decrease in MMEs with 50 subjects. The study was approved by the institutional review board and informed consent obtained in all subjects. Demographic (age, sex) and injury specific information (Injury Severity Score, number of rib fractures) were obtained. Subjects were randomized 1:1 to receive continuous LDKI (0.1 mg/kg/h) or placebo infusion (0.9% NaCl) for ≤48 hours. All patients received a standard evidence-based multidisciplinary protocol for rib fractures management. Primary outcome measure was MME use or pulmonary complications. Statistical comparison of LDKI versus placebo was performed using the Mann-Whitney U test., Results: All 50 enrolled subjects (placebo, 25; LDKI, 25) received study drug infusion. The two groups were well matched for age, Injury Severity Score, and number of rib fractures. We observed no differences in the Day 1 (p = 0.961), Day 2 (p = 0.373), or total MMEs (p = 0.946) between groups. Similar total MME use was observed when subjects who received ≥40 hours of study drug and were compared (p = 0.924). Use of LDKI did not alter subsequent need for opiate analgesics postinfusion, hospital length of stay, pulmonary complications, or need for readmission., Conclusion: The addition of LDKI to an established multimodal, evidence-based protocol for management of multiple rib fractures did not decrease opiate usage or impact pulmonary complications., Level of Evidence: Therapeutic/Care Managaement; Level I., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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33. Multiphase optimization strategy to establish optimal delivery of nutrition-related services in healthcare settings: A step towards clinical trial.
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Lemacks JL, Greer T, Aras S, Holbrook S, and Gipson J
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- Humans, Adult, Middle Aged, Female, Male, Mississippi, Cardiovascular Diseases prevention & control, Cardiovascular Diseases epidemiology, Cost-Benefit Analysis, Research Design, Diet, Ethnic and Racial Minorities
- Abstract
Background: Minorities living in the Southern US generally have greater incidence and prevalence of cardiometabolic diseases compared to other groups. Cardiometabolic disease prevalence and risk can be reduced by focusing on diet and lifestyle modifications. There is need for holistic and integrated care models for community-based healthcare organizations who are already working with minorities. This research aimed to select and optimize essential psychosocial and structural components to address diet behaviors among racial/ethnic minorities, and/or disadvantaged background young to middle aged adult populations in Mississippi., Methods: Nutrition360 was guided by a community-academic team using a participatory approach and included a preparation and two optimization phases to examine different approaches to dietary interventions utilizing the multiphase optimization strategy. Each intervention arm included three different modalities to identify the most feasible delivery method. The intervention was conducted at a community-based, outpatient healthcare center located in Jackson, MS. Eligible participants were between 25 and 50 years old, residents of Jackson metropolitan area, at risk for cardiovascular disease-related premature mortality, and had internet access. Individuals who completed baseline surveys were randomly assigned to an intervention group and then to modality order. Co-primary outcomes were research participant burden and cost-effectiveness and secondary outcomes were attendance, and dietary measures., Results: Thirty-one, African American individuals with a mean age of 40.5 years completed baseline surveys and were randomized to an intervention program., Conclusion: The two most feasible and cost-effective interventions will be combined to further test this model's delivery in the real-world setting as part of the next optimization phase., Registration: ClinicalTrials.gov, NCT06286618. https://clinicaltrials.gov/study/NCT06286618., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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34. Use of an Integrated Pulmonary Index pathway decreased unplanned ICU admissions in elderly patients with rib fractures.
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Davis N, Lindbloom P, Hromatka K, Gipson J, and West MA
- Abstract
Unplanned intensive care unit (ICU) admission (UIA) is a Trauma Quality Improvement Program benchmark that is associated with increased morbidity, mortality, and length of stay (LOS). Elderly patients with multiple rib fractures are at increased risk of respiratory failure. The Integrated Pulmonary Index (IPI) assesses respiratory compromise by incorporating SpO
2 , respiratory rate, pulse, and end-tidal CO2 to yield an integer between 1 and 10 (worst and best). We hypothesized that IPI monitoring would decrease UIA for respiratory failure in elderly trauma patients with rib fractures., Methods: Elderly (≥65 years old) trauma inpatients admitted to a level 1 trauma center from February 2020 to February 2023 were retrospectively studied during the introduction of IPI monitoring on the trauma floor. Patients with ≥4 rib fractures (or ≥2 with history of chronic obstructive pulmonary disease) were eligible for IPI monitoring and were compared with a group of chest Abbreviated Injury Scale score of 3 (≥3 rib fractures) patients who received usual care. Nurses contacted the surgeon for IPI ≤7. Patient intervention was left to the discretion of the provider. The primary endpoint was UIA for respiratory failure. Secondary endpoints were overall UIA, mortality, and LOS. Statistical analysis was performed using χ2 test and Student's t-test, with p<0.05 considered significant., Results: A total of 110 patients received IPI monitoring and were compared with 207 patients who did not. The IPI cohort was comparable to the non-IPI cohort in terms of gender, Injury Severity Score, Abbreviated Injury Scale, mortality, and LOS. There were 16 UIAs in the non-IPI cohort and two in the IPI cohort (p=0.039). There were no UIAs for respiratory failure in the IPI group compared with nine in the non-IPI group (p=0.03)., Conclusion: IPI monitoring is an easy-to-set up tool with minimal risk and was associated with a significant decrease in UIA in elderly patients with rib fracture., Level of Evidence: Level III, therapeutic/care management., Competing Interests: None declared., (Copyright © Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)- Published
- 2024
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35. Telehealth vs In-Clinic Medication Abortion Services.
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Fiastro AE, Zheng Z, Ruben MR, Gipson J, and Godfrey EM
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- Female, Pregnancy, Humans, Telemedicine, Abortion, Induced
- Published
- 2023
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36. HIV Incidence Among Individuals Accessing Pre-Exposure Prophylaxis in Jackson, Mississippi.
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Riley T, Bender M, Wang X, Mena L, Gipson J, Barnes A, Johnson KL, Backus KV, Gomillia CE, Ward LM, and Khosropour CM
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- Male, Humans, Female, Incidence, Homosexuality, Male, HIV Infections diagnosis, HIV Infections epidemiology, HIV Infections prevention & control, Pre-Exposure Prophylaxis, Anti-HIV Agents therapeutic use, Transgender Persons
- Abstract
Although pre-exposure prophylaxis (PrEP) is an efficacious biomedical intervention, the effectiveness of same-day PrEP programs has not been widely studied. We utilized data from three of the four largest PrEP providers in Mississippi from September 2018 to September 2021 linked to the Mississippi State Department of Health's Enhanced HIV/AIDS reporting system. HIV diagnosis was defined as testing newly positive for HIV at least 2 weeks after the initial PrEP visit. We calculated the cumulative incidence and incidence rate of HIV per 100 person-years (PY). Person-time was calculated as time from the initial PrEP visit to (1) HIV diagnosis or (2) December 31, 2021 (HIV surveillance data end date). We did not censor individuals if they discontinued PrEP to obtain an estimate of PrEP effectiveness rather than efficacy. Among the 427 clients initiating PrEP during the study period, 2.3% [95% confidence interval (CI): 0.9-3.8] subsequently tested positive for HIV. The HIV incidence rate was 1.18 per 100 PY (95% CI: 0.64-2.19) and median time to HIV diagnosis after the initial PrEP visit was 321 days (95% CI: 62-686). HIV incidence rates were highest among transgender and nonbinary individuals [10.35 per 100 PY (95% CI: 2.59-41.40)] compared with cisgender men and women, and among people racialized as Black [1.45 per 100 PY (95% CI: 0.76-2.80)] compared with White and other racialized groups. These findings indicate a need for more clinical and community interventions that support PrEP persistence and restarts among those at high risk of HIV acquisition.
- Published
- 2023
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37. Spontaneous Retroperitoneal Haemorrhage: Efficacy of Conservative Management and Embolisation.
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Lukies M, Gipson J, Tan SY, and Clements W
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- Humans, Male, Aged, Retrospective Studies, Case-Control Studies, Hemorrhage diagnostic imaging, Hemorrhage etiology, Hemorrhage therapy, Treatment Outcome, Conservative Treatment, Embolization, Therapeutic methods
- Abstract
Purpose: To assess the efficacy of conservative management and embolisation in patients with spontaneous retroperitoneal haemorrhage., Methods: Single-centre retrospective case-control study of patients with spontaneous retroperitoneal haemorrhage treated conservatively or with embolisation. Patients aged ≥ 18 years were identified from CT imaging reports stating a diagnosis of retroperitoneal haemorrhage or similar and images reviewed for confirmation. Exclusion criteria included recent trauma, surgery, retroperitoneal vascular line insertion, or other non-spontaneous aetiology. Datapoints analysed included treatment approach (conservative or embolisation), technical success, clinical success, and mortality outcome., Results: A total of 54 patients met inclusion criteria, who were predominantly anticoagulated (74%), male (72%), older adults (mean age 69 years), with active haemorrhage on CT (52%). Overall mortality was 15%. Clinical success was more likely with conservative management (36/38) than embolisation (9/16; p < 0.01), and all-cause (1/38 vs 7/16; p < 0.01) and uncontrolled primary bleeding (1/38 vs 5/16; p < 0.01) mortality were higher with embolisation. However, embolised patients more commonly had active bleeding on CT (15/38 vs 13/16; p < 0.01), shock (5/38 vs 6/16; p < 0.04), and higher blood transfusion volumes (mean 2.2 vs 5.9 units; p < 0.01). After one-to-one propensity score matching, differences in clinical success (p = 0.04) and all-cause mortality (p = 0.01) remained; however, difference in uncontrolled primary bleeding mortality did not (p = 0.07)., Conclusion: Conservative management of SRH is likely to be effective in most patients, even in those who are anticoagulated and haemodynamically unstable, with variable success seen after embolisation in a more unstable patient group, supporting the notion that resuscitation and optimisation of coagulation are the most vital components of treatment., (© 2023. The Author(s).)
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- 2023
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38. Passive recruitment reach of a lifestyle management program to address obesity in the deep south during the COVID-19 pandemic.
- Author
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Lemacks JL, Abbott LS, Navarro C, McCoy S, Greer T, Aras S, Madson MB, Reese-Smith J, Lawrick C, Gipson J, Buck BK, and Johnson M
- Abstract
Obesity is a significant public health concern, especially in the Deep South and in Mississippi where prevalence is among the worst in the nation paired, with other poor health outcomes and socioeconomic conditions. Lifestyle management programs that address modifiable risk factors, such as nutrition and physical activity, can be effective mitigation strategies to halt weight accumulation patterns and ameliorate metabolic risk factors for some populations. However, there is limited evidence regarding the implementation of effective practice models to address obesity risk in underserved and underrepresented populations, such as African Americans, and people in the stage of earlier adulthood. Furthermore, there is growing evidence supporting the impact of the COVID-19 pandemic on lifestyle management programs that should be considered in these populations. The purpose of this manuscript was to describe the development and telehealth implementation of a weight management program during the COVID-19 pandemic and provide a preliminary examination of recruitment strategies and baseline characteristics for enrolled participants. Passive recruitment (social media, web, email, and other media advertisements) resulted in 157 screening initiations, and 79 of those participants met the study inclusion criteria. Further, of the 79 eligible participants, 38 completed all study enrollment requirements and presented with metabolic abnormalities. The study findings add to the emerging body of evidence for how the pandemic may have impacted lifestyle management programs and is representative of an understudied and underrepresented population., Competing Interests: Conflict of interest: The authors declare no conflicts of interest., (© 2023 the Author(s), licensee AIMS Press.)
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- 2023
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39. PrEP Acceptance among Eligible Patients Attending the Largest PrEP Clinic in Jackson, Mississippi.
- Author
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Hollcroft MR, Gipson J, Barnes A, Mena L, Dombrowski JC, Ward LM, and Khosropour CM
- Subjects
- Male, Humans, United States, Mississippi epidemiology, Homosexuality, Male, Sexual Partners, Anti-HIV Agents therapeutic use, HIV Infections epidemiology, HIV Infections prevention & control, HIV Infections drug therapy, Transgender Persons, Pre-Exposure Prophylaxis
- Abstract
Compared to other states in the United States, Mississippi has the lowest uptake of PrEP relative to the number of people newly diagnosed with HIV in the state. Open Arms Healthcare Center is the largest provider of PrEP in Mississippi, and has systematically documented PrEP eligibility, offers, and acceptance (ie, agreed to undergo a clinical PrEP evaluation) from 2017 to mid-2020. In encounter-based analyses, we examined factors associated with PrEP acceptance. Among 721 encounters where patients were eligible for PrEP, staff offered PrEP at 680 (94%) of encounters (526 unique individuals); individuals accepted a PrEP offer at 58% of encounters. Accepting a PrEP offer was lowest (15.8%) among transgender/non-binary individuals and highest (93.3%) among individuals who reported having sex partners living with HIV. This clinic's model worked to offer PrEP to a highly impacted population, though there is a need to enhance PrEP acceptance for key groups such as transgender/non-binary individuals.
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- 2023
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40. Mississippi INBRE Outreach Scholars program: adapting a summer scholars program to the virtual world amidst the COVID-19 pandemic.
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Lemacks JL, Greer T, Aras S, Iverson C, Willis D, Duplantis T, Hickmon FL, Gipson J, Elasri MO, Madson M, and Reese-Smith J
- Subjects
- Biological Science Disciplines, Biomedical Research standards, Community-Institutional Relations, Healthcare Disparities, Humans, Mississippi, Program Evaluation methods, Students, Surveys and Questionnaires, Virtual Reality, Biomedical Research education, COVID-19 epidemiology, Pandemics
- Abstract
The Mississippi IDeA Networks of Biomedical Research Excellence (INBRE) supported by the National Institute of General Medical Sciences (Grant P20GM103476) launched the new Mississippi INBRE Outreach Scholars (MIOS) summer research program in 2019. The program was designed to offer students community outreach and research experiences related to the study of behavioral and health disparities life sciences. The program was adapted in early 2020 to offer the program in a fully online format in the summer of 2020. This article details the program adaptations and discusses program evaluation data related to scholars' perceptions of program benefits and expectations and their confidence in research-related skills. The program evaluation was a mixed-method approach that included a qualitative postprogram survey and a pre-post quantitative survey. Scholars identified technical and communication skill building and resilience as areas of personal growth. Overall, the program met scholars' expectations for the program and significantly improved their confidence on 8 of the 19 (with confidence interval estimated differences from 0.3 to 2.56, where a difference of 1 is an improvement across 1 anchor on a Likert-type scale) various research-related tasks/skills after completion of the program. The analyses presented demonstrated that a combined qualitative and quantitative analysis approach is useful for examining the extent to which programs such as Mississippi INBRE are meeting goals of providing a rich research experience in health disparities for a diverse student body. Future longitudinal data may be examined to explore the long-term impact of MIOS on career preparation and choices and graduate education. NEW & NOTEWORTHY The Mississippi INBRE Outreach Scholars program is a summer research program for Mississippi college students that was successfully adapted to a fully online environment amidst the coronavirus-19 pandemic.
- Published
- 2022
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41. Diagnostic accuracy of a commercially available deep-learning algorithm in supine chest radiographs following trauma.
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Gipson J, Tang V, Seah J, Kavnoudias H, Zia A, Lee R, Mitra B, and Clements W
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- Adult, Aged, Algorithms, Humans, Male, Middle Aged, Radiography, Radiography, Thoracic, Retrospective Studies, Artificial Intelligence, Deep Learning
- Abstract
Objectives: Trauma chest radiographs may contain subtle and time-critical pathology. Artificial intelligence (AI) may aid in accurate reporting, timely identification and worklist prioritisation. However, few AI programs have been externally validated. This study aimed to evaluate the performance of a commercially available deep convolutional neural network - Annalise CXR V1.2 (Annalise.ai) - for detection of traumatic injuries on supine chest radiographs., Methods: Chest radiographs with a CT performed within 24 h in the setting of trauma were retrospectively identified at a level one adult trauma centre between January 2009 and June 2019. Annalise.ai assessment of the chest radiograph was compared to the radiologist report of the chest radiograph. Contemporaneous CT report was taken as the ground truth. Agreement with CT was measured using Cohen's κ and sensitivity/specificity for both AI and radiologists were calculated., Results: There were 1404 cases identified with a median age of 52 (IQR 33-69) years, 949 males. AI demonstrated superior performance compared to radiologists in identifying pneumothorax ( p = 0.007) and segmental collapse ( p = 0.012) on chest radiograph. Radiologists performed better than AI for clavicle fracture ( p = 0.002), humerus fracture ( p < 0.0015) and scapula fracture ( p = 0.014). No statistical difference was found for identification of rib fractures and pneumomediastinum., Conclusion: The evaluated AI performed comparably to radiologists in interpreting chest radiographs. Further evaluation of this AI program has the potential to enable it to be safely incorporated in clinical processes., Advances in Knowledge: Clinically useful AI programs represent promising decision support tools.
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- 2022
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42. Impact of COVID-19 lockdowns on registrar reporting volumes in a Melbourne teaching hospital.
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Gipson J, Lee R, and Clements W
- Subjects
- Communicable Disease Control, Hospitals, Teaching, Humans, SARS-CoV-2, COVID-19
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- 2022
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43. Social determinants of health related to stay-at-home order adherence and social distancing attitudes among a diverse Deep South population.
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Lemacks JL, Greer T, Aras S, Abbott L, Willis D, Gipson J, and Elasri MO
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- Attitude, Humans, SARS-CoV-2, Social Determinants of Health, COVID-19, Physical Distancing
- Abstract
Objective: To describe COVID-19 related symptoms and medical care experienced in the first six months of the pandemic as well as stay-at-home order adherence, and attitudes related to COVID-19 risk and social distancing among a diverse sample of adults in the Deep South., Methods: Survey data were collected from 411 Louisiana and Mississippi residents for three weeks in June 2020 through social media., Results: Over half (52.5%) of participants who experienced COVID-19 related symptoms (with 41.5% experiencing at least one symptom) did not feel the severity of symptoms warranted seeking medical care. 91.6% of the Deep South adults visited certain places or did activities where visiting or gathering with other people was involved during stay-at-home mandates. Religiosity/spirituality, age, education, number of children in the home, attitudes related to COVID-19 risk of complications and social distancing were related to the greater/lesser likelihood of stay-at-home order adherence., Conclusions: Various cultural and contextual factors were related to stay-at-home order adherence. Understanding how social values, life stage, socioeconomic, and geographic factors influence stay-at-home order adherence would lead to more effective policy design to improve population adherence., (© 2021. The Author(s).)
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- 2021
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44. Are rural Malawian women using their preferred contraceptive method and that of their male partners?
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Huber-Krum S, Bornstein M, Garver S, Gipson J, Chapotera G, and Norris AH
- Subjects
- Cohort Studies, Contraceptive Agents, Family Planning Services, Female, Humans, Male, Pregnancy, Contraception, Contraception Behavior
- Abstract
Objectives: To measure the agreement between women's current contraceptive use and her preferred method, as well as her partner's preferred method., Study Design: We used the fourth wave of survey data (2017-2018) from the Umoyo wa Thanzi (UTHA) cohort study of sexual and reproductive health decision making. The prevalence of concordance between women's current method and her preferred method was calculated (n = 818). Among partnered women, we calculated prevalence of concordance between women's current method and her partner's preferred method (n = 719). We used multivariate logistic regression analyses to assess the relationship between women's characteristics and the outcomes., Results: Despite high prevalence of modern contraceptive use (74.4%), many women were using methods that did not match their preferences (62.6%) or those of their partners (62.3%). Fifty-five percent of women with preference-use discordance preferred methods that were more effective than theirs. Satisfaction with current family planning choice (adjusted odds ratio [aOR], > 5.5 each) and pregnancy desires (aOR, >1.5 each) were strong predictors of both concordance between women's current method and her preferred method and her partner's preferred method. Women who reported higher sexual frequency in past month had elevated odds of concordance between her current and preferred method (aOR: 1.97 for 9+times in past months) than women who had not had sex., Conclusions: Many Malawian women are not using methods they or their partners prefer. Women desiring pregnancy, women reporting infrequent sex, and women who are not satisfied with their method are likely to prefer a different method than the one they are currently using., Implications: Understanding women's preferences can assist with family planning service provision. Health care providers and researchers should consider the specific methods that women and their partners prefer to use, besides whether they are using any method., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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45. Implementation of a Prophylactic Anticoagulation Guideline for Patients with Traumatic Brain Injury.
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Tignanelli CJ, Gipson J, Nguyen A, Martinez R, Yang S, Reicks PL, Sybrant C, Roach R, Thorson M, and West MA
- Subjects
- Anticoagulants therapeutic use, Humans, Quality Improvement, Brain Injuries, Traumatic complications, Venous Thromboembolism prevention & control
- Abstract
Background: Patients with traumatic brain injury (TBI) are at an increased risk of developing complications from venous thromboembolisms (VTEs [blood clots]). Benchmarking by the American College of Surgeons Trauma Quality Improvement Program identified suboptimal use of prophylactic anticoagulation in patients with TBI. We hypothesized that institutional implementation of an anticoagulation protocol would improve clinical outcomes in such patients., Methods: A new prophylactic anticoagulation protocol that incorporated education, weekly audits, and real-time adherence feedback was implemented in July 2015. The trauma registry identified patients with TBI before (PRE) and after (POST) implementation. Multivariable regression analysis with risk adjustment was used to compare use of prophylactic anticoagulation, VTE events, and mortality., Results: A total of 681 patients with TBI (368 PRE, 313 POST) were identified. After implementation of the VTE protocol, more patients received anticoagulation (PRE: 39.4%, POST: 80.5%, p < 0.001), time to initiation was shorter (PRE: 140 hours, POST: 59 hours, p < 0.001), and there were fewer VTE events (PRE: 19 [5.2%], POST: 7 [2.2%], p = 0.047). Multivariable analysis showed that POST patients were more likely to receive anticoagulation (odds ratio [OR] = 10.8, 95% confidence interval [CI] = 6.9-16.7, p < 0.001) and less likely to develop VTE (OR = 0.33, 95% CI = 0.1-1.0, p = 0.05)., Conclusion: Benchmarking can assist institutions to identity potential clinically relevant areas for quality improvement in real time. Combining education and multifaceted protocol implementation can help organizations to better focus limited quality resources and counteract barriers that have hindered adoption of best practices., (Copyright © 2019 The Joint Commission. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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46. The Open Arms Healthcare Center's Integrated HIV Care Services Model.
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Melvin SC and Gipson J
- Subjects
- Anti-HIV Agents therapeutic use, Cross-Sectional Studies, HIV Infections diagnosis, HIV Infections psychology, Humans, Medication Adherence, Mississippi, Non-Randomized Controlled Trials as Topic, Social Work organization & administration, Viral Load methods, Case Management organization & administration, Delivery of Health Care, Integrated organization & administration, HIV Infections prevention & control, Outcome Assessment, Health Care organization & administration
- Abstract
Introduction: Mississippi has the seventh highest rate of people newly diagnosed with HIV infection, and the city of Jackson - the capital and largest metropolitan area of Mississippi - has the third highest rate of AIDS diagnoses among all metropolitan areas in the nation. Linking patients to care and proper adherence to antiretroviral therapy is important for achieving viral load suppression and reducing transmission of the virus. However, many HIV-infected patients have social and clinical barriers to achieving viral suppression. To overcome these barriers the Open Arms Healthcare Center has implemented an integrated HIV care services model., Purpose and Objectives: The purpose of this study was to determine whether an integrated model of HIV care influenced linkage to health care, adherence to antiretroviral therapy, and viral load suppression., Intervention Approach: The integrated HIV care services model consisted of 5 care coordination components: 1) case management, 2) HIV health care (primary health care), 3) behavioral health care (mental and substance abuse screening and treatment), 4) adherence counseling (a pharmacist-led intervention), and 5) social support services (transportation, emergency food assistance, housing, and legal assistance)., Evaluation Methods: We used a cross-sectional research design to examine Open Arms electronic health record data collected from 231 patients from January 2015 through December 2017 to determine if an integrated model of HIV care resulted in increased linkage to health care, higher adherence rates, and improved viral load suppression., Results: Findings showed a 38.0% increase in the viral load suppression rate, a 12.8% increase in antiretroviral therapy adherence rate, and an 11.0% increase in retention rates among Open Arms patients receiving integrated HIV care., Implications for Public Health: A comprehensive, holistic approach helps to effectively identify and connect HIV-positive patients to care and relink patients who may have fallen out of care.
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- 2019
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47. Use of a Statewide Public Health Tool to Estimate Miles Driven by Intoxicated Drivers.
- Author
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West MA, Smith A, Helm T, Reicks P, Thorson M, and Gipson J
- Subjects
- Accidents, Traffic prevention & control, Adult, Age Factors, Databases, Factual, Female, Humans, Incidence, Male, Middle Aged, Minnesota, Retrospective Studies, Risk Assessment, Sex Factors, Accidents, Traffic mortality, Accidents, Traffic statistics & numerical data, Driving Under the Influence statistics & numerical data, Police, Public Health methods
- Published
- 2019
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48. Should they stay or should they go? Who benefits from interfacility transfer to a higher-level trauma center following initial presentation at a lower-level trauma center.
- Author
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Adzemovic T, Murray T, Jenkins P, Ottosen J, Iyegha U, Raghavendran K, Napolitano LM, Hemmila MR, Gipson J, Park P, and Tignanelli CJ
- Subjects
- Adult, Aged, Female, Humans, Injury Severity Score, Male, Middle Aged, Proportional Hazards Models, Retrospective Studies, Trauma Centers organization & administration, Triage statistics & numerical data, Patient Transfer statistics & numerical data, Trauma Centers statistics & numerical data, Triage organization & administration, Wounds and Injuries mortality
- Abstract
Background: Interfacility transfer of patients from Level III/IV to Level I/II (tertiary) trauma centers has been associated with improved outcomes. However, little data are available classifying the specific subsets of patients that derive maximal benefit from transfer to a tertiary trauma center. Drawbacks to transfer include increased secondary overtriage. Here, we ask which injury patterns are associated with improved survival following interfacility transfer., Methods: Data from the National Trauma Data Bank was utilized. Inclusion criteria were adults (≥16 years). Patients with Injury Severity Score of 10 or less or those who arrived with no signs of life were excluded. Patients were divided into two cohorts: those admitted to a Level III/IV trauma center versus those transferred into a tertiary trauma center. Multiple imputation was performed for missing values, and propensity scores were generated based on demographics, injury patterns, and disease severity. Using propensity score-stratified Cox proportional hazards regression, the hazard ratio for time to death was estimated., Results: Twelve thousand five hundred thirty-four (5.2%) were admitted to Level III/IV trauma centers, and 227,315 (94.8%) were transferred to a tertiary trauma center. Patients transferred to a tertiary trauma center had reduced mortality (hazard ratio, 0.69; p < 0.001). We identified that patients with traumatic brain injury with Glasgow Coma Scale score less than 13, pelvic fracture, penetrating mechanism, solid organ injury, great vessel injury, respiratory distress, and tachycardia benefited from interfacility transfer to a tertiary trauma center. In this sample, 56.8% of the patients benefitted from transfer. Among those not transferred, 49.5% would have benefited from being transferred., Conclusion: Interfacility transfer is associated with a survival benefit for specific patients. These data support implementation of minimum evidence-based criteria for interfacility transfer., Level of Evidence: Therapeutic/Care Management, Level IV.
- Published
- 2019
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49. Comparison of Health, Development, Maternal Bonding, and Poverty Among Children Born After Denial of Abortion vs After Pregnancies Subsequent to an Abortion.
- Author
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Foster DG, Biggs MA, Raifman S, Gipson J, Kimport K, and Rocca CH
- Subjects
- Abortion Applicants, Abortion, Induced, Adolescent, Adult, Family Planning Services, Female, Humans, Infant, Newborn, Longitudinal Studies, Male, Object Attachment, Pregnancy, Pregnancy Outcome epidemiology, United States epidemiology, Young Adult, Child Development, Child Welfare, Mother-Child Relations, Poverty, Pregnancy, Unwanted psychology
- Abstract
Importance: Evidence indicates that there are potential health, development, and maternal bonding consequences for children born from unwanted pregnancies., Objective: To examine the association of women receiving or being denied a wanted abortion with their children's health and well-being., Design, Setting, and Participants: A 5-year longitudinal observational study with a quasi-experimental design conducted between January 18, 2008, and January 25, 2016, examined women who received abortions just under the gestational age limit of 30 abortion facilities across the United States and women who were denied abortion just beyond the gestational age limit in these facilities. Analyses compared the children of 146 women who were denied an abortion (index children) with children born to 182 women who received an abortion and had a subsequent child within 5 years (subsequent children). Interview-to-interview retention averaged 94.5% (6895 of 7293) across the 11 semi-annual interviews., Exposures: Being born after denial of abortion vs after a new pregnancy subsequent to an abortion., Main Outcomes and Measures: Perinatal outcomes and child health, child development, maternal bonding, socioeconomics, and household structure., Results: This study included 328 women who had children during the study period (mean [SD] age at study recruitment, 23.7 [4.9] years). There were no differences by study group in consent to participate in the study, completion of first interview, or continuation in the study. Among the 328 children in the study (146 index children and 182 subsequent children), there were 163 girls and 165 boys. Perinatal and child health outcomes were not different between subsequent and index children, and there was no clear pattern of delayed child development. However, mixed-effects models adjusting for clustered recruitment and multiple observations per child revealed that poor maternal bonding was more common for index children compared with subsequent children (9% vs 3%; adjusted odds ratio, 5.14; 95% CI, 1.48-17.85). Index children lived in households with lower incomes relative to the federal poverty level than did subsequent children (101% vs 132% of federal poverty level; adjusted regression coefficient, -0.31; 95% CI, -0.52 to -0.10), and were more likely to live in households without enough money to pay for basic living expenses (72% vs 55%; adjusted odds ratio, 5.16; 95% CI, 2.34-11.40)., Conclusions and Relevance: These findings suggest that access to abortion enables women to choose to have children at a time when they have more financial and emotional resources to devote to their children.
- Published
- 2018
- Full Text
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50. Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.
- Author
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Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, and Levine SS
- Subjects
- Gene Expression Profiling methods, Gene Library, Humans, Poly A genetics, RNA, Ribosomal genetics, High-Throughput Nucleotide Sequencing methods, RNA, Ribosomal isolation & purification, Sequence Analysis, RNA methods
- Abstract
Background: Ribosomal RNA (rRNA) comprises at least 90% of total RNA extracted from mammalian tissue or cell line samples. Informative transcriptional profiling using massively parallel sequencing technologies requires either enrichment of mature poly-adenylated transcripts or targeted depletion of the rRNA fraction. The latter method is of particular interest because it is compatible with degraded samples such as those extracted from FFPE and also captures transcripts that are not poly-adenylated such as some non-coding RNAs. Here we provide a cross-site study that evaluates the performance of ribosomal RNA removal kits from Illumina, Takara/Clontech, Kapa Biosystems, Lexogen, New England Biolabs and Qiagen on intact and degraded RNA samples., Results: We find that all of the kits are capable of performing significant ribosomal depletion, though there are differences in their ease of use. All kits were able to remove ribosomal RNA to below 20% with intact RNA and identify ~ 14,000 protein coding genes from the Universal Human Reference RNA sample at >1FPKM. Analysis of differentially detected genes between kits suggests that transcript length may be a key factor in library production efficiency., Conclusions: These results provide a roadmap for labs on the strengths of each of these methods and how best to utilize them.
- Published
- 2018
- Full Text
- View/download PDF
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