NEUROPEPTIDE Y (NPY) is a 36 amino acid neuro-modulator belonging to the PP-fold family of peptides (Berglund et al., 2003; Colmer and Wahlestedt, 1993; Dumont et al., 1992). NPY immunoreactivity (IR) has been noted in brain regions such as the amygdala, cerebral cortex, caudate putamen, hippocampus, hypothalamus, and nucleus of the solitary tract (Gray and Morley, 1986) and has been shown to be involved in the regulation of a wide-ranging group of biological functions. It has been implicated in the control of food intake (Clark et al., 1984; Levine and Morley, 1984), cardiovascular homeostasis (Pedrazzini et al., 1998), integration of emotional behavior (Heilig et al., 1993; Heilig and Widerlov, 1995), neuronal development (Hansel et al., 2001a,b), seizure activity (Woldbye et al., 1996, 1997), pain modulation (Shi et al., 1999, 2001), thermogenesis (Lopez-Valpuesta et al., 1996), circadian rhythms (Biello et al., 1997; Golombek et al., 1996; Gribkoff et al., 1998; Harrington and Schak, 2000), and reproduction (Kalra et al., 1998; Kasuya et al., 1998). In recent years, evidence has emerged showing that NPY is also involved with neurobiological responses to ethanol (Pandey et al., 2003a; Thiele and Badia-Elder, 2003; Thiele et al., 2003, 2004b). Specifically, administration of ethanol and ethanol withdrawal alter central NPY expression in rodents (Bison and Crews, 2003; Clark et al., 1998; Ehlers et al., 1998; Kinoshita et al., 2000; Roy and Pandey, 2002; Thiele et al., 2000a). Further, NPY has been implicated in the modulation of ethanol consumption in rats selectively bred for ethanol preference. A genetic linkage analysis conducted in F2 intercross progenies of selectively bred alcohol-preferring (P) and -nonpreferring (NP) rat lines identified a chromosomal region that includes the gene for the NPY precursor (Bice et al., 1998; Carr et al., 1998; Foroud et al., 2000). P rats and the high alcohol drinking (HAD) rats have low levels of NPY in the amygdala when compared with controls (Ehlers et al., 1998; Hwang et al., 1999), and ventricular administration of NPY reduces ethanol drinking in P and HAD rats but not in NP rats, low alcohol drinking (LAD) rats, or outbred Wistar rats (Badia-Elder et al., 2003; Badia-Elder et al., 2001; Gilpin et al., 2003; Katner et al., 2002a,b; Slawecki et al., 2000). Interestingly, in genetically modified mice, voluntary ethanol consumption and resistance to the intoxicating effects of ethanol are inversely related to NPY levels (Thiele et al., 1998, 2000b, 2002, 2004a). Corticotropin releasing factor (CRF) is a 41 amino acid polypeptide that is expressed in many of the same brain regions as NPY, including the hypothalamus and amygdala (Swanson et al., 1983). Interestingly, NPY and CRF often produce opposing neurobiological actions. Thus, after ethanol withdrawal, there are low levels of NPY (Pandey et al., 2003b; Roy and Pandey, 2002) and increased levels of CRF (Merlo Pich et al., 1995) in the amygdala. Furthermore, central infusion of NPY (Pandey et al., 2003b) or CRF receptor antagonists (Breese et al., 2004; Knapp et al., 2004; Overstreet et al., 2004; Rassnick et al., 1993) reverses the anxiogenic effect of ethanol withdrawal. Of critical interest, while NPY decreases ethanol consumption in high ethanol drinking models (Badia-Elder et al., 2003; Badia-Elder et al., 2001; Gilpin et al., 2003), central infusion of the CRF receptor antagonist D-Phe-CRF(1,2-14) eliminates excessive ethanol drinking by rats made dependent with chronic exposure to ethanol vapor (Valdez et al., 2002). Because of their opposing actions, it has been suggested that CRF and NPY exert a reciprocal regulation of drug self-administration through allostatic interactions within the extended amygdala (Koob, 2003; Koob and Le Moal, 2001). The goal of the present study was twofold. First, we determined if ethanol consumption was inversely related to NPY levels in two inbred strains of mice that differ dramatically in their voluntary consumption of ethanol (Belknap et al., 1993; Le et al., 1994; Meliska et al., 1995; Mittleman et al., 2003; Risinger et al., 1998). C57BL/6J mice voluntary consume 10–12 g/kg/day of ethanol when offered a 10% (v/v) solution, while DBA/2J mice consume approximately 1.0 g/kg/day (Belknap et al., 1993). Second, because of the proposed relationship between NPY and CRF, we determined if C57BL/6J and DBA/2J mice also differed in central CRF levels. Immunohistochemistry procedures were used to determine NPY and CRF levels in critical brain regions within the hypothalamus and the extended amygdala. On the basis of observations utilizing genetically altered mice and selectively bred rats, we predicted that C57BL/6J mice would have low NPY levels in specific brain regions when compared with DBA/2J mice. Furthermore, because excessive ethanol drinking may be modulated by enhanced CRF receptor signaling (Valdez et al., 2002), we predicted that the C57BL/6J mice would also differ from the DBA/2J mice in brain CRF levels.