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Peatlands have often been neglected in Earth system models (ESMs). Where they are included, they are usually represented via a separate, prescribed grid cell fraction that is given the physical characteristics of a peat (highly organic) soil. However, in reality soils vary on a spectrum between purely mineral soil (no organic material) and purely organic soil, typically with an organic layer of variable thickness overlying mineral soil below. They are also dynamic, with organic layer thickness and its properties changing over time. Neither the spectrum of soil types nor their dynamic nature can be captured by current ESMs. Here we present a new version of an ESM land surface scheme (Joint UK Land Environment Simulator, JULES) where soil organic matter accumulation – and thus peatland formation, degradation and stability – is integrated in the vertically resolved soil carbon scheme. We also introduce the capacity to track soil carbon age as a function of depth in JULES and compare this to measured peat age–depth profiles. The new scheme is tested and evaluated at northern and temperate sites. This scheme simulates dynamic feedbacks between the soil organic material and its thermal and hydraulic characteristics. We show that draining the peatlands can lead to significant carbon loss, soil compaction and changes in peat properties. However, negative feedbacks can lead to the potential for peatlands to rewet themselves following drainage. These ecohydrological feedbacks can also lead to peatlands maintaining themselves in climates where peat formation would not otherwise initiate in the model, i.e. displaying some degree of resilience. The new model produces similar results to the original model for mineral soils and realistic profiles of soil organic carbon for peatlands. We evaluate the model against typical peat profiles based on 216 northern and temperate sites from a global dataset of peat cores. The root-mean-squared error (RMSE) in the soil carbon profile is reduced by 35 %–80 % in the best-performing JULES-Peat simulations compared with the standard JULES configuration. The RMSE in these JULES-Peat simulations is 7.7–16.7 kg C m -3 depending on climate zone, which is considerably smaller than the soil carbon itself (around 30–60 kg C m -3). The RMSE at mineral soil sites is also reduced in JULES-Peat compared with the original JULES configuration (reduced by ∼ 30 %–50 %). Thus, JULES-Peat can be used as a complete scheme that simulates both organic and mineral soils. It does not require any additional input data and introduces minimal additional variables to the model. This provides a new approach for improving the simulation of organic and peatland soils and associated carbon-cycle feedbacks in ESMs. [ABSTRACT FROM AUTHOR]

The salinisation of many coastal ecosystems is underway and is expected to continue into the future because of sea‐level rise and storm intensification brought about by the changing climate. However, the response of soil microbes to increasing salinity conditions within coastal environments is poorly understood, despite their importance for nutrient cascading, carbon sequestration and wider ecosystem functioning. Here, we demonstrate deterioration in the productivity of a top‐tier microbial group (testate amoebae) with increasing coastal salinity, which we show to be consistent across phylogenetic groups, salinity gradients, environment types and latitude. Our results show that microbial changes occur in the very early stages of marine inundation, presaging more radical changes in soil and ecosystem function and providing an early warning of coastal salinisation that could be used to improve coastal planning and adaptation. [ABSTRACT FROM AUTHOR]

Peatlands have often been neglected in Earth System Models (ESMs). Where they are included, they are usually represented via a separate, prescribed grid cell fraction that is given the physical characteristics of a peat (highly organic) soil. However, in reality soils vary on a spectrum between purely mineral soil (no organic material), and purely organic soil, typically with an organic layer of variable thickness overlying mineral soil below. They are also dynamic, with organic layer thickness and its properties changing over time. Neither the spectrum of soil types nor their dynamic nature can be captured by current ESMs. Here we present a new version of an ESM land surface scheme (Joint UK Land Environment Simulator, JULES) where soil organic matter accumulation - and thus peatland formation, degradation and stability - is integrated in the vertically-resolved soil carbon scheme. We also introduce the capacity to track soil carbon age as a function of depth in JULES, and compare this to measured peat age-depth profiles. This scheme simulates dynamic feedbacks between the soil organic material and its thermal and hydraulic characteristics. We show that draining the peatlands can lead to significant carbon loss along with soil compaction and changes in peat properties. However, negative feedbacks can lead to the potential for peatlands to rewet themselves following drainage. These ecohydrological feedbacks can also lead to peatlands maintaining themselves in climates where peat formation would not otherwise initiate in the model, i.e. displaying some degree of resilience. The new model produces similar results to the original model for mineral soils, and realistic profiles of soil organic carbon for peatlands. In particular the best performing configurations had root mean squared error (RMSE) in carbon density for peat sites of 7.7-16.7 kgC m−3 depending on climate zone, when compared against typical peat profiles based on 216 sites from a global dataset of peat cores. This error is considerably smaller than the soil carbon itself (around 30-60 kgC m−3) and reduced by 35-80 % compared with standard JULES. The RMSE at mineral soil sites is also smaller in JULES-Peat than JULES itself (reduced by ~30-50 %). Thus JULES-Peat can be used as a complete scheme that simulates both organic and mineral soils. It does not require any additional input data and introduces minimal additional variables to the model. This provides a new approach for improving the simulation of organic and peatland soils, and associated carbon-cycle feedbacks in ESMs, which other land surface models could follow. [ABSTRACT FROM AUTHOR]

Northern peatlands have accumulated large carbon (C) stocks since the last deglaciation and during past millennia they have acted as important atmospheric C sinks. However, it is still poorly understood how northern peatlands in general and Arctic permafrost peatlands in particular will respond to future climate change. In this study, we present C accumulation reconstructions derived from 14 peat cores from four permafrost peatlands in northeast European Russia and Finnish Lapland. The main focus is on warm climate phases. We used regression analyses to test the importance of different environmental variables such as summer temperature, hydrology, and vegetation as drivers for nonautogenic C accumulation. We used modeling approaches to simulate potential decomposition patterns. The data show that our study sites have been persistent mid‐ to late‐Holocene C sinks with an average accumulation rate of 10.80–32.40 g C m−2 year−1. The warmer climate phase during the Holocene Thermal Maximum stimulated faster apparent C accumulation rates while the Medieval Climate Anomaly did not. Moreover, during the Little Ice Age, apparent C accumulation rates were controlled more by other factors than by cold climate per se. Although we could not identify any significant environmental factor that drove C accumulation, our data show that recent warming has increased C accumulation in some permafrost peatland sites. However, the synchronous slight decrease of C accumulation in other sites may be an alternative response of these peatlands to warming in the future. This would lead to a decrease in the C sequestration ability of permafrost peatlands overall. Key Points: Carbon accumulation in Arctic permafrost peatlands responds inconsistently to warm climate phasesRecent warming is reflected not only as increasing but also as decreasing in carbon accumulationPermafrost peatlands are creating a negative feedback to climate warming but have a probable future scenario to turn to a positive feedback [ABSTRACT FROM AUTHOR]

ABSTRACT To explore the use of testate amoeba for investigating the impacts of climate change on permafrost peatland hydrology, we established a new modern training set from Arctic permafrost peatlands in north-east European Russia and Finnish Lapland. Ordination analyses showed that water-table depth (WTD) was the most important control on testate amoeba distribution. We developed a new testate amoeba-based WTD transfer function and thoroughly tested it. We found that our transfer function had strong predictive power. The best-performing model was based on tolerance-downweighted weighted averaging with inverse deshrinking ( R2 = 0.77, RMSEP = 5.62 cm with leave-one-out cross validation). The new transfer function was applied to a short peat core from Arctic Russia and revealed two major hydrological shifts, which could be validated against plant macrofossil data. We also compared our model to another two models from more temperate peatlands. Comparison of the different testate amoeba datasets suggests that testate amoeba ecohydrological relationships are similar for permafrost peatlands to those in more temperate regions, but there are some differences that suggest a need for training datasets that are fully representative of permafrost peatlands. [ABSTRACT FROM AUTHOR]

Bioclimatic indices for use in studies of ecosystem function, species distribution, and vegetation dynamics under changing climate scenarios depend on estimates of surface fluxes and other quantities, such as radiation, evapotranspiration and soil moisture, for which direct observations are sparse. These quantities can be derived indirectly from meteorological variables, such as near-surface air temperature, precipitation and cloudiness. Here we present a consolidated set of simple process-led algorithms for simulating habitats (SPLASH) allowing robust approximations of key quantities at ecologically relevant timescales. We specify equations, derivations, simplifications, and assumptions for the estimation of daily and monthly quantities of top-of-the-atmosphere solar radiation, net surface radiation, photosynthetic photon flux density, evapotranspiration (potential, equilibrium, and actual), condensation, soil moisture, and runoff, based on analysis of their relationship to fundamental climatic drivers. The climatic drivers include a minimum of three meteorological inputs: precipitation, air temperature, and fraction of bright sunshine hours. Indices, such as the moisture index, the climatic water deficit, and the Priestley-Taylor coefficient, are also defined. The SPLASH code is transcribed in C++, FORTRAN, Python, and R. A total of 1 year of results are presented at the local and global scales to exemplify the spatiotemporal patterns of daily and monthly model outputs along with comparisons to other model results. [ABSTRACT FROM AUTHOR]

High-latitude peatlands contain about one third of the world's soil organic carbon, most of which is derived from partly decomposed Sphagnum (peat moss) plants. We conducted a meta-analysis based on a global data set of Sphagnum growth measurements collected from published literature to investigate the effects of bioclimatic variables on Sphagnum growth. Analysis of variance and general linear models were used to relate Sphagnum magellanicum and S. fuscum growth rates to photosynthetically active radiation integrated over the growing season (PAR0) and a moisture index. We found that PAR0 was the main predictor of Sphagnum growth for the global data set, and effective moisture was only correlated with moss growth at continental sites. The strong correlation between Sphagnum growth and PAR0 suggests the existence of a global pattern of growth, with slow rates under cool climate and short growing seasons, highlighting the important role of growing season length in explaining peatland biomass production. Large-scale patterns of cloudiness during the growing season might also limit moss growth. Although considerable uncertainty remains over the carbon balance of peatlands under a changing climate, our results suggest that increasing PAR0 as a result of global warming and lengthening growing seasons, without major change in cloudiness, could promote Sphagnum growth. Assuming that production and decomposition have the same sensitivity to temperature, this enhanced growth could lead to greater peat-carbon sequestration, inducing a negative feedback to climate change. [ABSTRACT FROM AUTHOR]

Low affinity methanotrophic bacteria consume a significant quantity of methane in wetland soils in the vicinity of plant roots and at the oxic-anoxic interface. Estimates of the efficiency of methanotrophy in peat soils vary widely in part because of differences in approaches employed to quantify methane cycling. High resolution profiles of dissolved methane abundance measured during the summer of 2003 were used to quantity rates of upward methane flux in four peatlands situated inWales, UK. Aerobic incubations of peat from a minerotrophic and an ombrotrophic mire were used to determine depth distributions of kinetic parameters associated with methane oxidation. The capacity for methanotrophy in a 3 cm thick zone immediately beneath the depth of nil methane abundance in pore water was significantly greater than the rate of upward diffusion of methane in all four peatlands. Rates of methane diffusion in pore water at the minerotrophic peatlands were small (<10%) compared to surface emissions during June to August. The proportions were notably greater in the ombrotrophic bogs because of their typically low methane emission rates. Methanotrophy appears to consume entirely methane transported by pore water diffusion in the four peatlands with the exception of 4 of the 33 gas profiles sampled. Flux rates to the atmosphere regardless are high because of gas transport through vascular plants, in particular, at the minerotrophic sites. Cumulative rainfall amount 3-days prior to sampling correlated well with the distance between the water table level and the depth of 0 μmol l-1 methane, indicating that precipitation events can impact methane distributions in pore water. Further work is needed to characterise the kinetics of methane oxidation spatially and temporally in different wetland types in order to determine generalized relationships for methanotrophy in peatlands that can be incorporated into process-based models of methane cycling in peat soils. [ABSTRACT FROM AUTHOR]

Low affinity methanotrophic bacteria consume a significant quantity of methane in wetland soils in the vicinity of plant roots and at the oxic-anoxic interface. Estimates of the efficiency of methanotrophy in peat soils vary widely in part because of differences in approaches employed to quantify methane cycling. High resolution profiles of dissolved methane abundance measured during the summer of 2003 were used to quantify rates of upward methane flux in four peatlands situated in Wales, UK. Aerobic incubations of peat from a minerotrophic and an ombrogenous mire were used to determine depth distributions of kinetic parameters associated with methane oxidation. The capacity for methanotrophy in a 3 cm thick zone immediately beneath the depth of nil methane abundance in pore water was significantly greater than the rate of upward diffusion of methane in all four peatlands. Rates of methane diffusion in pore water at the minerotrophic peatlands were small (<10%) compared to surface emissions during June to August. The proportions were notably greater in the ombrogenous bogs because of their typically low methane emission rates. Methanotrophy appears to consume entirely methane transported by pore water diffusion in the four peatlands with the exception of 4 of the 33 gas profiles sampled. Flux rates to the atmosphere regardless are high because of gas transport through vascular flora, in particular, at the minerotrophic sites. Cumulative rainfall amount 3-days prior to sampling correlated well with the distance between the water table level and the depth of 0 μmol l-1 methane, indicating that precipitation events can impact methane distributions in pore water. Further work is needed to characterise the kinetics of methane oxidation spatially and temporally in different wetland types in order to determine generalized relationships for methanotrophy in peatlands that can be incorporated into process-based models of methane cycling in peat soils. [ABSTRACT FROM AUTHOR]

Climate warming has inevitable impacts on the vegetation and hydrological dynamics of high-latitude permafrost peatlands. These impacts in turn determine the role of these peatlands in the global biogeochemical cycle. Here, we used six active layer peat cores from four permafrost peatlands in Northeast European Russia and Finnish Lapland to investigate permafrost peatland dynamics over the last millennium. Testate amoeba and plant macrofossils were used as proxies for hydrological and vegetation changes. Our results show that during the Medieval Climate Anomaly (MCA), Russian sites experienced short-term permafrost thawing and this induced alternating dry-wet habitat changes eventually followed by desiccation. During the Little Ice Age (LIA) both sites generally supported dry-hummock habitats, at least partly driven by permafrost aggradation. However, proxy data suggest that occasionally, MCA habitat conditions were drier than during the LIA, implying that evapotranspiration may create important additional eco-hydrological feedback mechanisms under warm conditions. All sites showed a tendency towards dry conditions as inferred from both proxies starting either from ca . 100 years ago or in the past few decades after slight permafrost thawing, suggesting that recent warming has stimulated surface desiccation rather than deeper permafrost thawing. This study shows links between two important controls over hydrology and vegetation changes in high-latitude peatlands: direct temperature-induced surface layer response and deeper permafrost layer-related dynamics. These data provide important backgrounds for predictions of Arctic permafrost peatlands and related feedback mechanisms. Our results highlight the importance of increased evapotranspiration and thus provide an additional perspective to understanding of peatland-climate feedback mechanisms. [ABSTRACT FROM AUTHOR]

Northern peatlands store globally-important amounts of carbon in the form of partly decomposed plant detritus. Drying associated with climate and land-use change may lead to increased fire frequency and severity in peatlands and the rapid loss of carbon to the atmosphere. However, our understanding of the patterns and drivers of peatland burning on an appropriate decadal to millennial timescale relies heavily on individual site-based reconstructions. For the first time, we synthesise peatland macrocharcoal records from across North America, Europe, and Patagonia to reveal regional variation in peatland burning during the Holocene. We used an existing database of proximal sedimentary charcoal to represent regional burning trends in the wider landscape for each region. Long-term trends in peatland burning appear to be largely climate driven, with human activities likely having an increasing influence in the late Holocene. Warmer conditions during the Holocene Thermal Maximum (∼9–6 cal. ka BP) were associated with greater peatland burning in North America's Atlantic coast, southern Scandinavia and the Baltics, and Patagonia. Since the Little Ice Age, peatland burning has declined across North America and in some areas of Europe. This decline is mirrored by a decrease in wider landscape burning in some, but not all sub-regions, linked to fire-suppression policies, and landscape fragmentation caused by agricultural expansion. Peatlands demonstrate lower susceptibility to burning than the wider landscape in several instances, probably because of autogenic processes that maintain high levels of near-surface wetness even during drought. Nonetheless, widespread drying and degradation of peatlands, particularly in Europe, has likely increased their vulnerability to burning in recent centuries. Consequently, peatland restoration efforts are important to mitigate the risk of peatland fire under a changing climate. Finally, we make recommendations for future research to improve our understanding of the controls on peatland fires. • We reconstruct peatland burning trends at mid-to high-latitudes for the Holocene. • Variation in climate, human activity and peatland processes influences burning. • Peatlands demonstrate lower susceptibility to burning than the wider landscape. • We outline the steps needed to better understand the drivers of peatland fire. [ABSTRACT FROM AUTHOR]

• Testate amoeba distributions are driven by water-table depth and pH in Svalbard. • We develop transfer functions for reconstructing peatland water-table depth and pH. • These represent the most northerly peatland testate amoeba transfer functions. • Weak idiosomic tests preserve poorly but removal has no impact on model performance. • Transfer functions are used to reconstruct peatland dynamics from 800 CE to present. Peatlands are valuable archives of information about past environmental conditions and represent a globally-important carbon store. Robust proxy methods are required to reconstruct past ecohydrological dynamics in high-latitude peatlands to improve our understanding of change in these carbon-rich ecosystems. The High Arctic peatlands in Svalbard are at the northern limit of current peatland distribution and have experienced rapidly rising temperatures of 0.81 °C per decade since 1958. We examine the ecology of peatland testate amoebae in surface vegetation samples from permafrost peatlands on Spitsbergen, the largest island of the Svalbard archipelago, and develop new transfer functions to reconstruct water-table depth (WTD) and pH that can be applied to understand past peatland ecosystem dynamics in response to climate change. These transfer functions are the first of their kind for peatlands in Svalbard and the northernmost developed to date. Multivariate statistical analysis shows that WTD and pore water pH are the dominant controls on testate amoeba species distribution. This finding is consistent with results from peatlands in lower latitudes with regard to WTD and supports work showing that when samples are taken across a long enough trophic gradient, peatland trophic status is an important control on the distribution of testate amoebae. No differences were found between transfer functions including and excluding the taxa with weak idiosomic tests (WISTs) that are most susceptible to decay. The final models for application to fossil samples therefore excluded these taxa. The WTD transfer function demonstrates the best performance (R2 LOO = 0.719, RMSEP LOO = 3.2 cm), but the pH transfer function also performs well (R2 LOO = 0.690, RMSEP LOO = 0.320). The transfer functions were applied to a core from western Spitsbergen and suggest drying conditions ~1750 CE, followed by a trend of recent wetting and increasing pH from ~1920 CE. These new transfer functions allow the reconstruction of past peatland WTD and pH in Svalbard, thereby enabling a greater understanding of long-term ecohydrological dynamics in these rapidly changing ecosystems. [ABSTRACT FROM AUTHOR]