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Herbivory can have contrasted impacts on soil microbes and nutrient cycling, which has stimulated the development of conceptual frameworks exploring the links between below- and aboveground processes. The “productivity model” predicts that herbivores stimulate microbial activities and accelerate nutrient mineralization in productive ecosystems, while they have an opposite effect in less productive ecosystems. In parallel, the “diet model” predicts that herbivores feeding on conservative plants accelerate nutrient cycling while those feeding on exploitative plants decelerate nutrient cycling, due to changes in litter inputs. Since these two frameworks can lead to conflicting predictions in some cases, experimental evidence combining herbivore diet and plant productivity is required. During two consecutive years, we conducted an experiment controlling the presence of three grasshopper species consuming either grasses, forbs or both in twelve natural and managed alpine grasslands with contrasted productivities. In order to assess the effects of herbivory on soil microbes, we measured their extracellular enzymatic activities, biomass and potential nitrogen mineralization (PNM). Soil and vegetation were also characterized to test how much they modulated the effects of herbivory on microbes. Contrary to the predictions of the diet model, the effects of herbivory on microbial characteristics did not depend on the herbivores diet, but were influenced by primary production, though in a way that differed from the productivity model. The most productive sites were constituted by exploitative plant species which depleted N resources in the soil, and by microbes producing relatively few extracellular enzymes, leading to a lower PNM. Herbivory increased microbial biomass and decreased the production of extracellular enzymes in those sites, possibly through the stimulation of root exudates produced by exploitative species. The least productive sites were characterized by conservative plants, high soil C content, and by microbes having a resource acquisition strategy (more extracellular enzymes, higher PNM). Herbivory decreased microbial biomass and increased the production of extracellular enzymes in those sites. This pattern can be explained by the loss of carbon associated with insect respiration, which increases the resource requirements of microbes and by a lower production of root exudates by conservative species. Therefore, the effects of two years of herbivory on soil microbes were at odds with the productivity model, which focuses instead on longer term effects corresponding to herbivory-induced changes in plant species composition. This highlights the multidimensional feature of the impacts of herbivory on ecosystem functioning, both in space and time.

Rivers form meta‐ecosystems, in which disturbance and connectivity control biodiversity, ecosystem functioning and their interactions across the river network, but also across connected instream and riparian ecosystems. This aquatic–terrestrial linkage is modified by drying, a disturbance that also naturally fragments river networks and thereby modifies organism dispersal and organic matter (OM) transfers across the river network. However, little evidence of the effects of drying on river network‐scale OM cycling exists. Here, we assessed the effects of fragmentation by drying at the river meta‐ecosystem scale by monitoring leaf resource stocks, invertebrate communities and decomposition rates, across three seasons and 20 sites, in the instream and riparian habitats of a river network naturally fragmented by drying. Although instream leaf resource quantity and quality increased, leaf‐shredder invertebrate richness and abundance decreased with flow intermittence. Decomposition was, however, mainly driven by network‐scale fragmentation and connectivity. Shredder richness and invertebrate‐driven decomposition both peaked at sites with intermediate amounts of intermittent reaches upstream, suggesting that upstream drying can promote the biodiversity and functioning of downstream ecosystems. Shredder richness, however, had a negative effect on decomposition in perennial sites, likely due to interspecific competition. Leaf quantity, invertebrate communities and invertebrate‐driven decomposition became more similar between instream and riparian habitats as drying frequency increased, likely due to homogenization of environmental conditions between both habitats as the river dried. Our study demonstrates the paramount effects of drying on the dynamics of resources, communities and ecosystem functioning in rivers and presents evidence of one of the first network‐scale examples of the co‐drivers of ecosystem functions across terrestrial–aquatic boundaries. [ABSTRACT FROM AUTHOR]

Rivers significantly contribute to global biogeochemical cycles; however, we have a limited understanding of how drying may influence these cycles. Drying fragments river networks, thereby influencing important ecosystem functions such as the processing of carbon and nitrogen, and associated fluxes of greenhouse gases (GHGs) both locally, and at the river network scale. Our objective was to assess, using a network‐scale approach, the lateral, longitudinal, and temporal dynamics of GHG fluxes in a river network naturally fragmented by drying. We used a closed‐loop chamber with automated analyzers to measure carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes from dry sediments, flowing waters, isolated pools, and riparian soils, along with a suite of environmental variables, over 9 months at 20 sites across a non‐perennial river network in France. Network‐scale drying had a spatial and temporal legacy effect on GHG fluxes. On average, CO2 fluxes were up to 29 times higher from perennial than non‐perennial sites under flowing conditions. At non‐perennial sites, CO2 and N2O fluxes positively covaried with time since rewetting. In addition, CO2 and N2O fluxes at perennial sites positively covaried with the percent of non‐perennial reaches upstream, indicating a spatial effect of drying. GHG fluxes from riparian soil and dry riverbed sediments had markedly different magnitudes and covariates. This research demonstrates that drying not only has a local‐scale impact but also influences GHG fluxes at the network scale, contributing valuable insights for upscaling global riverine GHG estimates. [ABSTRACT FROM AUTHOR]

River fragmentation by drying and damming is occurring more frequently in the Anthropocene era, yet there is limited knowledge of how this fragmentation influences greenhouse gas (GHG) fluxes in river networks. River networks have the potential to be important sources of GHGs to the atmosphere through both similar and dissimilar mechanisms associated with temporary (drying) and permanent (damming) fragmentation.We conducted a review of the literature and found 49, 43 and six studies about GHGs (CO2, CH4 and N2O) in rivers impacted by damming, drying and their interaction, respectively.We found research lacking in non‐arid climates and in small water‐retention structures for studies regarding drying and damming, respectively. The major factors directly influencing GHG fluxes in river networks impacted by drying were sediment moisture, temperature, organic matter content and texture. In networks impacted by damming, the most influential factors were water temperature, dissolved oxygen, and phytoplankton Chlorophyll‐a.Based on our literature review and meta‐ecosystem theory, we propose that the spatial distribution of fragmentation strongly influences GHG fluxes at the river‐network scale.The actionable future research directions identified here will help to improve our understanding of the effects of fragmentation by drying and damming on GHG fluxes, with the potential to inform river management and climate change mitigation strategies. [ABSTRACT FROM AUTHOR]

Aim: Plant–soil interactions can be major driving forces of community responses to environmental changes in terrestrial ecosystems. These interactions can leave signals in aboveground plant functional traits and belowground microbial activities and these signals can manifest in observed covariations. However, we know little about how these plant–soil linkages vary in response to environmental conditions at biogeographic scales for which experiments are impossible. Here, we investigate patterns of direct and indirect linkages between plant functional traits, soil microbial activities and environmental conditions in mountain grasslands along elevational gradients. Location: The French Alps. Taxon: Vascular plants and soil microbiota. Methods: We analysed observational grassland data sampled along 14 elevational gradients across the entire French Alps (between 1500 and 2800 m of elevation). Using Graphical Lasso, we inferred a partial correlation network to tease apart direct and indirect plant–soil linkages without defining the direction of interactions a priori. Results: We found tight spatial associations of plant traits with microbial activities, climate driving the former and soil properties the latter. In these plant–soil linkages, the dominance of specific plant traits was more important than their diversity. We then showed that in sites with conservative plant traits and reduced organic matter quality, soil microbes invested strongly in nutrient acquisition. Main conclusions: By investigating plant–soil linkages along elevational gradients in the French Alps, we showed that plant functional traits and belowground microbial activity are tightly linked and how they depend on environmental conditions. Overall, we demonstrated how soil functioning can be integrated in studies of ecosystem shifts under environmental change at large spatial scales. [ABSTRACT FROM AUTHOR]

With the increased occurrence of climate extremes, there is an urgent need to better understand how management strategies affect the capacity of the soil microbial community to maintain its ecosystem functions (e.g. nutrient cycling).To address this issue, intact monoliths were extracted from conventional and ecological managed grasslands in three countries across Europe and exposed under common air condition (temperature and moisture) to one of three altered rain regimes (dry, wet and intermittent wet/dry) as compared to a normal regime. Subsequently, we compared the resistance and recovery of the soil microbial biomass, potential enzyme activities and community composition.The microbial community composition differed with soil management and rain regimes. Soil microbial biomass increased from the wetter to the dryer rain regime, paralleling an increase of available carbon and nutrients, suggesting low sensitivity to soil moisture reduction but nutritional limitations of soil microbes. Conversely, enzyme activities decreased with all altered rain regimes.Resistance and recovery (considering absolute distance between normal and altered rain regime) of the microbial communities depended on soil management. Conventional‐intensive management showed higher resistance of two fundamental properties for nutrient cycling (i.e. bacterial biomass and extracellular enzyme activities) yet associated with more important changes in microbial community composition. This suggests an internal community reorganization promoting biomass and activity resistance. Conversely, under ecological management bacterial biomass and enzyme activities showed better recovery capacity, whereas no or very low recovery of these properties was observed under conventional management. These management effects were consistent across the three altered rain regimes investigated, indicating common factors controlling microbial communities' response to different climate‐related stresses.Synthesis and applications. Our study provides experimental evidence for an important trade‐off for agroecosystem management between (a) stabilizing nutrient cycling potential during an altered rain regime period at the expense of very low recovery capacity and potential long‐term effect (conventional sites) and (b) promoting the capacity of the microbial community to recover its functional potential after the end of the stress (ecological sites). Thus, management based on ecologically sound principles may be the best option to sustain long‐term soil functioning under climate change. [ABSTRACT FROM AUTHOR]

While soil ecosystems undergo important modifications due to global change, the effect of soil properties on plant distributions is still poorly understood. Plant growth is not only controlled by soil physico‐chemistry but also by microbial activities through the decomposition of organic matter and the recycling of nutrients essential for plants. A growing body of evidence also suggests that plant functional traits modulate species' response to environmental gradients. However, no study has yet contrasted the importance of soil physico‐chemistry, microbial activities and climate on plant species distributions, while accounting for how plant functional traits can influence species‐specific responses. Using hierarchical effects in a multi‐species distribution model, we investigate how four functional traits related to resource acquisition (plant height, leaf carbon to nitrogen ratio, leaf dry matter content and specific leaf area) modulate the response of 44 plant species to climatic variables, soil physico‐chemical properties and microbial decomposition activity (i.e. exoenzymatic activities) in the French Alps. Our hierarchical trait‐based model allowed to predict well 41 species according to the TSS statistic. In addition to climate, the combination of soil C/N, as a measure of organic matter quality, and exoenzymatic activity, as a measure of microbial decomposition activity, strongly improved predictions of plant distributions. Plant traits played an important role. In particular, species with conservative traits performed better under limiting nutrient conditions but were outcompeted by exploitative plants in more favorable environments. We demonstrate tight associations between microbial decomposition activity, plant functional traits associated to different resource acquisition strategies and plant distributions. This highlights the importance of plant–soil linkages for mountain plant distributions. These results are crucial for biodiversity modelling in a world where both climatic and soil systems are undergoing profound and rapid transformations. [ABSTRACT FROM AUTHOR]

Trait‐based approaches provide a framework to understand the role of functional biodiversity on ecosystem functioning under global change. While plant traits have been reported as potential drivers of soil microbial community composition and resilience, studies directly assessing microbial traits are scarce, limiting our mechanistic understanding of ecosystem functioning.We used microbial biomass and enzyme stoichiometry, and mass‐specific enzymes activity as proxies of microbial community‐weighted mean (CWM) traits, to infer trade‐offs in microbial strategies of resource use with cascading effects on ecosystem resilience. We simulated a drought event on intact plant–soil mesocosms extracted from mountain grasslands along a management intensity gradient. Ecosystem processes and properties related to nitrogen cycling were quantified before, during and after drought to characterize ecosystem resilience.Soil microbial CWM traits and ecosystem resilience to drought were strongly influenced by grassland type. Structural equation modelling revealed a cascading effect from management to ecosystem resilience through modifications in soil nutrients, and plant and microbial CWM traits. Overall, our results depict a shift from high investment in extracellular enzymes in nutrient‐poor soils (oligotrophic strategy), to a copiotrophic strategy with low microbial biomass N:P and low investment in extracellular enzymes associated with exploitative plant traits in nutrient‐rich soils.Microbial CWM traits responses to management intensity were highly related to ecosystem resilience. Microbial communities with a copiotrophic strategy had lower resistance but higher recovery to drought, while microbial communities with an oligotrophic strategy showed the opposite responses. The unexpected trade‐off between plant and microbial resistance suggested that the lower resistance of copiotrophic microbial communities enabled plant resistance to drought.Synthesis. Grassland management has cascading effects on ecosystem resilience through its combined effects on soil nutrients and plant traits propagating to microbial traits and resilience. We suggest that intensification of permanent grassland management and associated increases in soil nutrient availability decreased plant–microbe competition for N under drought through the selection of drought‐sensitive microbial communities with a copiotrophic strategy that promoted plant resistance. Including proxies of microbial CWM traits into the functional trait framework will strengthen our understanding of soil ecosystem functioning under global change. [ABSTRACT FROM AUTHOR]

Much effort has been devoted to better understanding the effects of environment and biodiversity on ecosystem functioning. However, few studies have moved beyond measuring biodiversity as species richness of a single group and/or focusing on a single ecosystem function. While there is a growing recognition that along environmental gradients, the compositional turnover of multiple trophic groups influences not only productivity but multiple ecosystem functions, we do not know yet which components of multi‐trophic β‐diversity influence which ecosystem functions.Here, we captured the biodiversity found in soils using environmental DNA to study total soil multi‐trophic β‐diversity (between all taxa regardless of their trophic group association), horizontal β‐diversities (β‐diversities within trophic groups) and vertical β‐diversity (β‐diversity across trophic groups) along a 1,000 m elevational gradient in the French Alps. Using path analyses, we quantified how these β‐diversity components mediate the effects of environmental turnover on the turnover of multiple ecosystem functions (i.e. productivity, N‐cycling, N‐leaching) and overall multifunctionality.While we found a strong direct effect of soil properties on the turnover of multiple ecosystem functions, we also found an indirect effect of climate and soil properties through multi‐trophic β‐diversity. More specifically, only total multi‐trophic β‐diversity and the horizontal β‐diversity of saprophytic fungi were strongly related to the turnover of multifunctionality and, to a lower extent, the turnover of productivity and N‐cycling. Our results suggest that decomposition processes and resulting nutrient availability are key to understand how ecosystem functions change along soil properties and climatic gradients in alpine ecosystems.By demonstrating how saprophytic fungi and their associated trophic groups can offset the direct responses of multiple ecosystem functions to environmental change, our study highlights the paramount importance of multi‐trophic diversity for better understanding ecosystem multifunctionality in a changing world. A free Plain Language Summary can be found within the Supporting Information of this article. [ABSTRACT FROM AUTHOR]

Aquatic ecosystems are generally subjected to multiple perturbations due to simultaneous or successive combinations of various natural and anthropogenic environmental pressures. To better assess and predict the resulting ecological consequences, increasing attention should be given to the accumulation of stresses on freshwater ecosystems and its effects on the vulnerability of aquatic organisms, including microbial communities, which play crucial functional roles. Here we used a microcosm study to assess the influence of an experimental warming on the vulnerability of phototrophic and heterotrophic periphytic communities to acute and chronic copper (Cu) toxicity. Natural periphytic communities were submitted for 4 weeks to three different temperatures (18, 23, and 28°C) in microcosms contaminated (at about 15 μg L-1) or not with Cu. The vulnerability of both phototrophic and heterotrophic microbial communities to subsequent acute Cu stress was then assessed by measuring their levels of sensitivity to Cu from bioassays targeting phototrophic (photosynthetic activity) and heterotrophic (β-glucosidase and leucine aminopeptidase extracellular enzymatic activities) microbial functions. We postulated that both the increase in temperature and the chronic Cu exposure would modify microbial community structure, thus leading to changes in the capacity of phototrophic and heterotrophic communities to tolerate subsequent acute exposure to Cu. Our results demonstrated that the influence of temperature on the vulnerability of phototrophic and heterotrophic microbial communities to Cu toxicity can vary greatly according to function studied. These findings emphasize the importance of considering different functional compartments and different functional descriptors to better assess the vulnerability of periphyton to multiple stresses and predict the risks induced by multiple stressors for ecosystem balance and functioning. [ABSTRACT FROM AUTHOR]

Background and aims: Drought events, agricultural practices and plant communities influence microbial and soil abiotic parameters which can feedback to fodder production. This study aimed to determine which soil legacies influence plant biomass production and nutritional quality, and its resistance and recovery to extreme weather events.Methods: In a greenhouse experiment, soil legacy effects on Lolium perenne were examined, first under optimal conditions, and subsequently during and after drought. We used subalpine grassland soils previously cultivated for two years with grass communities of distinct functional composition, and subjected to combinations of climatic stress and simulated management.Results: The soil legacy of climatic stress increased biomass production of Lolium perenne and its resistance and recovery to a new drought. This beneficial effect resulted from higher nutrient availability in soils previously exposed to climatic stresses due to lower competitive abilities and resistance of microbial communities to a new drought. This negative effect on microbial communities was strongest in soils from previously cut and fertilized grasslands or dominated by conservative grasses.Conclusion: In subalpine grasslands more frequent climatic stresses could benefit fodder production in the short term, but threaten ecosystem functioning and the maintenance of traditional agricultural practices in the long term. [ABSTRACT FROM AUTHOR]

Although it is known that multiple interactions among plant functional traits, microbial properties, and abiotic soil parameters influence the nutrient turnover, the relative contribution of each of these groups of variables is poorly understood. We manipulated grassland plant functional composition and soil nitrogen (N) availability in a multisite mesocosm experiment to quantify their relative effects on soil N turnover. Overall, root traits, arbuscular mycorrhizal colonization, denitrification potential, as well as N availability and water availability, best explained the variation in measured ecosystem properties, especially the trade-off between nutrient sequestration and plant biomass production. Their relative contributions varied with soil N availability. In relatively N-poor soils (10-20 μg•N•g-1 soil), N turnover was mainly controlled by microbial properties and abiotic soil parameters, whereas in the relatively N-rich soils (110-120 μg•N•g-1 soil), N turnover was mainly controlled by plant traits and microbial properties. This experiment is a strong demonstration of the importance of functional characteristics of both plants and soil microbes, and their interplay with soil N availability, for N turnover in grassland soils. [ABSTRACT FROM AUTHOR]

Streams located in vineyard areas are highly prone to metal pollution. In a context of global change, aquatic systems are generally subjected to multi-stress conditions due to multiple chemical and/or physical pressures. Among various environmental factors that modulate the ecological effects of toxicants, special attention should be paid to climate change, which is driving an increase in extreme climate events such as sharp temperature rises. In lotic ecosystems, periphyton ensures key ecological functions such as primary production and nutrient cycling. However, although the effects of metals on microbial communities are relatively well known, there is scant data on possible interactions between temperature increase and metal pollution. Here we led a study to evaluate the influence of temperature on the response of phototrophic periphyton to copper (Cu) exposure. Winter communities, collected in a 8 °C river water, were subjected for six weeks to four thermal conditions in microcosms in presence or not of Cu (nominal concentration of 15 μg L −1 ). At the initial river temperature (8 °C), our results confirmed the chronic impact of Cu on periphyton, both in terms of structure (biomass, distribution of algal groups, diatomic composition) and function (photosynthetic efficiency). At higher temperatures (13, 18 and 23 °C), Cu effects were modulated. Indeed, temperature increase reduced Cu effects on algal biomass, algal class proportions, diatom assemblage composition and photosynthetic efficiency. This reduction of Cu effects on periphyton may be related to lower bioaccumulation of Cu and/or to selection of more Cu-tolerant species at higher temperatures. [ABSTRACT FROM AUTHOR]

Streams located in vineyard areas are particularly exposed to mixtures of dissolved and particulate contaminants such as metals and organic pesticides. In this context, phototrophic biofilms are increasingly used as indicators of river water contaminations through pollution-induced community tolerance (PICT) assessments based on short-term toxicity tests with individual or mixtures of toxicants. We conducted a laboratory experiment to evaluate the relative influence of the dissolved and particulate fractions on the effects of metals and pesticides on phototrophic biofilms in a context of contamination from a vineyard watershed. Three sets of artificial channels were supplied with (i) unfiltered water from a stream reference site, (ii) unfiltered water from a stream contaminated site, and (iii) filtered water (0.45 μm) from the same contaminated site. Biofilm growth, diatom community structure, and dissolved toxicant concentrations differed slightly between channels supplied with unfiltered or filtered water from the contaminated site. However, PICT assessments with individual toxicants or mixtures of toxicants extracted from passive samplers suggested no significant difference in tolerance to metals and organic pesticides between phototrophic communities supplied with unfiltered or filtered contaminated water. Our results confirm the use of extracts from passive samplers as a promising approach in short-term toxicity tests to characterize impacts of contamination on aquatic communities. [ABSTRACT FROM AUTHOR]

Pollution-induced community tolerance (PICT) approaches involve comparing tolerance levels of natural communities to a particular contaminant or a contaminant mixture using short-term toxicity tests performed under controlled conditions. However, results from toxicity tests can be modulated by various environmental and experimental conditions, raising questions about their reproducibility and comparability. In this context, the present study aimed to determine the influence of exposure duration, periphyton suspension concentration, and periphyton maturation stage on the measurement of short-term effects of copper on phototrophic periphyton communities. Our results showed the very weak influence of exposure duration in the tested range (2-6 h) on toxicity level, whereas periphyton biomass in the tested suspension (in terms of both chlorophyll a concentrations and dry weight), proved a crucial determinant in toxicity assessment. Results also highlighted the potential tolerance increase with the periphyton maturation stage. This parameter conditioned the positive linear relationship between tolerance level and periphyton suspension concentration, leading to an increase in the linear regression slope with the maturation stage. This suggests that such a relationship is probably highly periphyton-dependent. Consequently, to enable data toxicity comparisons, an a priori normalization of the periphyton suspension biomass is necessary, and PICT approaches require the use, as much of possible, of periphyton with similar maturation stage. Finally, the present study clearly shows that a better standardization of PICT approaches could help to improve reproducibility. It could thus facilitate the comparison of tolerance levels measured in the same study (e.g., spatial and/or temporal and/or inter-treatment comparison) as well as the comparison obtained from different experimental and in situ research. [ABSTRACT FROM AUTHOR]

Microbial communities play a central role in the functioning of freshwater ecosystems, but the impact of severe low flow on microbial processes at the floodplain scale is largely unexplored, especially in terms of patterns in decline of water level. The differential responses of benthic and interstitial microbial communities are also unknown., We explored the structural and functional responses of bacterial and fungal communities to severe low-flow periods at the surface and deep in the sediment of three types of wetland, namely running water, upwelling zones and isolated pools., The different wetland types exhibited distinct microbial communities but the low-flow period induced homogenisation of community composition among wetland types. Despite a convergence in microbial community composition, the response of microbial processes differed among wetland types during the low-flow period: a decrease in biomass and activity in running water and upwelling sites contrasted with an increase observed in isolated pools., Microbial communities and processes deep in the sediment appeared less affected by the low-flow period and wetland type, but were not insensitive. Homogenisation of community compositions at 50 cm depth was observed 1 month after the low-flow period, suggesting drivers distinct from those at the surface. Our results demonstrate the predominant effect of environmental conditions on rates of microbial processes as opposed to community composition., Wetland heterogeneity, in terms of modalities of water level decrease, seems to be important for the maintenance of microbial processes at the floodplain scale in the context of increasing frequency and severity of low-flow periods. [ABSTRACT FROM AUTHOR]

The hyporheic zone is a pivotal environment for biogeochemical processes in riverine ecosystems. However, the responses of hyporheic microbial assemblage structure and activity to environmental variables remain poorly understood., The objective of this study was to determine the influence of hyporheic zone characteristics on microbial assemblages in three French rivers ( Usses, Isère and Drôme). For each river, microbial structure (assemblage composition and abundance) and activity were measured at three sites with contrasting environmental characteristics (e.g. effective streambed porosity, oxygen and nutrient concentrations)., Firstly, we expected that the structure and activity of the hyporheic microbial assemblage would be significantly affected by the environmental characteristics of the hyporheic zone. We also expected a strong relationship between the structure and activity of hyporheic microbial communities in the Usses River, due to greater spatial heterogeneity (i.e. greater porosity differences between the studied sites) compared with the two other rivers., Our results showed that porosity reduction, greatest in the Usses River, affected the exchanges of flows and energy through the hyporheic zone and, consequently, led to a distinct microbial assemblage composition in comparison with the two other rivers. Significant relationships between bacterial assemblage structure and activity were detected for the Usses and Drôme rivers, due to the greater spatial variability in sediment and physicochemical variables observed in these two rivers than in the Isère., Hyporheic zone characteristics (sediment permeability, water chemistry, particulate organic matter) appear to be the key factors controlling microbial structure and activity in riverine environments. As the hyporheic zone is essential for biogeochemical processes, including those attenuating pollution, a better quantification of the influences of environmental factors controlling microbial activity is needed to understand and predict ecosystem processes in the hyporheic zone. [ABSTRACT FROM AUTHOR]

Abstract: The European water legislation highlights the necessity of developing ecological criteria for assessing the quality of aquatic ecosystem. While a multitude of ecological indicators has been proposed and validated for streams, rivers and lakes, these indicators are not available for groundwater ecosystems. In the present study, we developed a method based on the measurements of the growth and activity of microorganisms developed on artificial substrates (glass beads) incubated in wells to characterize the trophic status of groundwater. Incubation sites were selected in an urban aquifer where previous works showed contrasting trophic conditions in groundwater due to artificial groundwater recharge practices. Total proteins, total carbohydrates, dehydrogenase and hydrolytic activities were measured on glass beads incubated in wells for two periods of 2 months (October–December 2010 and April–June 2011). Biofilm measured on glass beads was significantly more developed and active in wells where groundwater was enriched with dissolved organic matter due to artificial groundwater recharge. Indeed, most microbial variables (total proteins and dehydrogenase activities for the two incubation periods and hydrolytic activities for the second incubation period) were significantly and positively correlated with the concentrations of dissolved organic carbon (DOC) in groundwater. The availability of phosphorus also tended to influence biofilm growth (assessed by total carbohydrates) when PO4 3− concentrations were lower than 50μg/l. Overall, our study clearly demonstrated that artificial substrates acting as colonisable area for microorganisms could be used to efficiently monitor nutrient enrichment in aquifers. [Copyright &y& Elsevier]

1. Aquifers are considered to be controlled bottom-up because of their dependence on organic matter supply from surface ecosystems. Microorganisms are generally assumed to form the base of the food web and to respond strongly to organic matter supply. Although the bottom-up control of microorganisms by carbon sources has been well documented, the potential top-down control of obligate groundwater invertebrates on microorganisms has never been addressed in alluvial aquifers. 2. The main aims of the present study were (i) to quantify the relative influences of the activity of a subterranean amphipod ( Niphargus rhenorhodanensis) and the flux of dissolved organic carbon (DOC) on organic matter processing and microbial activity, biomass and abundance in slow filtration columns mimicking an alluvial aquifer, and (ii) to determine the feeding rate of N. rhenorhodanensis on sedimentary microbes by tracing the flux of a 13C-labelled source of DOC in batches (closed systems). 3. Slow filtration column experiments showed that microbial abundance, biomass and activity were primarily controlled by DOC flux, whereas the activity of N. rhenorhodanensis had only a slight effect on the microbial compartment. Modelling of carbon fluxes in the 13C-tracer experiments indicated that the feeding activity of the amphipod was too low to significantly modify microbial growth and activity. 4. Our experiments supported the hypothesis that groundwater ecosystems are controlled bottom-up. The small influence of N. rhenorhodanensis on the microbial compartment was probably linked to its slow metabolism. Our results highlight the need for further experiments to examine the relationship between metabolic rates of subterranean organisms and their role in ecosystem functioning. [ABSTRACT FROM AUTHOR]

The article presents a study on the possible effects of stormwater infiltration on the distribution of urban groundwater temperature by examining differences in water temperature in stormwater infiltration basins (SIB) in Lyon, France. Accordingly, the warming of groundwater is considered as one of the main environmental problems and the said issue has its meager and underdeveloped documentations. The study reveals that the significant effects of SIB to groundwater include decreased oxygen solubility and increased microbial respiration in the soil.

River networks contribute disproportionately to the global carbon cycle. However, global estimates of carbon emissions from inland waters are based on perennial rivers, even though more than half of the world's river length is prone to drying. We quantified CO2 and CH4 emissions from flowing water and dry riverbeds across six European drying river networks (DRNs, 120 reaches) and three seasons and identified drivers of emissions using local and regional variables. Drivers of emissions from flowing water differed between perennial and non‐perennial reaches, both CO2 and CH4 emissions were controlled partly by the annual drying severity, reflecting a drying legacy effect. Upscaled CO2 emissions for the six DRNs at the annual scale revealed that dry riverbeds contributed up to 77% of the annual emissions, calling for an urgent need to include non‐perennial rivers in global estimates of greenhouse gas emissions. [ABSTRACT FROM AUTHOR]

The functional trait framework provides a powerful corpus of integrated concepts and theories to assess how environmental factors influence ecosystem functioning through community assembly. While common in plant ecology, this approach is under-used in microbial ecology. After an introduction of this framework in the context of microbial ecology and enzymology, we propose an approach 1) to elucidate new links between soil microbial community composition and microbial traits; and 2) to disentangle mechanisms underlying "total" potential enzyme activity in soil (sum of 7 hydrolase potential activities). We address these objectives using a terrestrial grassland ecosystem model experiment with intact soil monoliths from three European countries (Switzerland, France and Portugal) and two management types (Conventional-intensive and Ecological-intensive), subjected to 4 rain regimes (Dry, Wet, Intermittent and Normal) under controlled conditions in a common climate chamber. We found tight associations between proxies of microbial ecoenzymatic community-weighted mean traits (enzymatic stoichiometry and biomass-specific activity) and community composition, bringing new information on resource acquisition strategy associated with fungi, Gram positive and Gram negative bacteria. We demonstrate that microbial biomass explained most of the total enzyme activity before altered rain regimes, whereas adjustments in biomass-specific activity (enzyme activity per unit of microbial biomass) explained most variation under altered rain regime scenarios. Furthermore, structural equation models revealed that the variation of community composition was the main driver of the variation in biomass-specific enzyme activity prior to rain perturbation, whereas physiological acclimation or evolutionary adaptation became an important driver only under altered rain regimes. This study presents a promising trait-based approach to investigate soil microbial community response to environmental changes and potential consequences for ecosystem functioning. We argue that the functional trait framework should be further implemented in microbial ecology to guide experimental and analytical design. • We implemented a functional trait framework to study soil microbial communities. • Community composition linked with enzyme stoichiometry and biomass-specific activity. • Acclimation/adaptation controlled biomass-specific activity under altered rain regimes. • Biomass-specific activity controlled more total activity under altered rain regimes. [ABSTRACT FROM AUTHOR]

Nitrogen uptake (N‐uptake) within the hyporheic zone provides key ecological services, such as nutrient removal, of stream ecosystems. We hypothesize that the hydraulic conductivity (Kf) of the hyporheic sediments governs nutrient uptake rates through effects on the (a) surface and subsurface flow (i.e., hyporheic flow) and (b) hyporheic N‐uptake. Here, we worked at two hierarchical spatial scales (reach and hyporheic scale) to disentangle the role of Kf on N‐uptake. At the reach scale, we performed coinjected N‐NH4+ and Cl– additions in six reaches with contrasting reach Kf (10−1–10−5 m/s) and simultaneously determined (a) in‐stream N‐uptake (hyporheic+benthic N‐uptake) and (b) hyporheic flow, and (c) N‐uptake and microbial community abundance at the hyporheic scale. Results suggest that Kf determines the contribution of the hyporheic zone to hydrological exchange but that its role varies between scales to determine in‐stream N‐uptake. At the reach scale, Kf variability seems to determine the extent at which the hyporheic zone contributes to hyporheic flow and, thus, to N‐uptake velocity. At the hyporheic scale, Kf seems to indirectly determine hyporheic N‐uptake through the proportion of surface water that enters the hyporheic zone (i.e., relative connectivity) and the abundance of the microbial community. These results suggest an interplay between Kf at both scales and its spatial heterogeneity, which will ultimately drive in‐stream N‐uptake at reach scale. In this sense, we found that Kf can be considered as a unifying variable for stream biogeochemical processes and as an important variable to derive the contribution of hyporheic zone to in‐stream nutrient removal capacity. [ABSTRACT FROM AUTHOR]

By measuring levels of tolerance to toxicants in microbial communities using functional toxicity tests under controlled conditions, pollution-induced community tolerance (PICT) approaches offer an effect-based tool to assess the ecological risk of chemicals in aquatic systems. However, induced tolerance of exposed microbial communities cannot always be attributed solely to the presence of toxicants as various environmental factors, such as temperature, can also be involved. Several PICT studies have been conducted to assess the effects of copper (Cu) on phototrophic periphyton, but little is known about the influence of temperature on the response of these microbial communities to acute and chronic exposure to Cu. Here, we report on a microcosm approach to assess the effects of two contrasting temperatures (18 °C and 28 °C) on (i) the baseline level of Cu tolerance in non-Cu-exposed phototrophic periphyton (i.e. effect of temperature on tolerance baseline), (ii) Cu tolerance acquisition by phototrophic periphyton in response to a 3-week chronic exposure to Cu at a nominal concentration of 60 μg L − 1 (i.e. effect of temperature on PICT selection) and (iii) tolerance measured during short-term toxicity tests (i.e. effect of temperature on PICT detection). The aim was to evaluate how temperature conditions during the different phases of the PICT approaches may modify the causal relationship between chronic Cu exposure and measured Cu tolerance levels. Our results evidence the influence of temperature both on the basal capacity of phototrophic periphyton to tolerate subsequent exposure to Cu (i.e. influence on tolerance baseline) and on its capacity to acquire tolerance following chronic exposure to Cu (i.e. influence on PICT selection). Hence temperature must be considered when using PICT to establish causal links between chronic Cu exposure and effects on phototrophic periphyton. [ABSTRACT FROM AUTHOR]