49 results on '"Farjon J"'
Search Results
2. Ion temperature profiles along a hydrogen diagnostic beam in a TORE SUPRA tokamak plasma
- Author
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Romannikov, A. N., Petrov, Yu. V., Platz, P., Hess, W. R., Hutter, T., Farjon, J. L., and Moreau, P.
- Published
- 2002
- Full Text
- View/download PDF
3. Monitoring Conformational Changes in an Enzyme Conversion Inhibitor Using Pure Shift Exchange NMR Spectroscopy.
- Author
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Aloui, G., Bouabdallah, S., Baltaze, J. P., Pucheta, J. E. H., Touil, S., Farjon, J., and Giraud, N.
- Published
- 2019
- Full Text
- View/download PDF
4. Combining pure shift and J‐edited spectroscopies: A strategy for extracting chemical shifts and scalar couplings from highly crowded proton spectra of oligomeric saccharides.
- Author
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Pitoux, D., Hu, Z., Plainchont, B., Merlet, D., Farjon, J., Bonnaffé, D., and Giraud, N.
- Subjects
COUPLING reactions (Chemistry) ,PROTON spectra ,NUCLEAR magnetic resonance spectroscopy ,OLIGOSACCHARIDES ,CHEMICAL shift (Nuclear magnetic resonance) - Abstract
We report the application of pure shift and J‐edited nuclear magnetic resonance spectroscopies to the structural analysis of a protected maltotrioside synthetic intermediate whose crowded
1 H spectrum displays highly crowded regions. The analytical strategy is based on the implementation of J‐edited and TOCSY experiments whose resolution is optimized by the use of broadband homonuclear decoupling and selective refocusing techniques, to assign and measure chemical shifts and homonuclear scalar couplings with high accuracy. The resulting data show a high level of complementarity, providing a detailed insight into each subunit of this oligomeric saccharide, even for proton sites whose nuclear magnetic resonance signals strongly overlap. This approach allowed for fully assigning proton chemical shifts and extracting 80% of the3 JHH couplings that are in excellent agreement with those expected for D‐gluco‐pyranosyl units in4 C1 conformations. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
5. Resolution enhancement in spectra of natural products dissolved in weakly orienting media with the help of 1H homonuclear dipolar decoupling during acquisition: Application to 1H-13C dipolar couplings measurements
- Author
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Farjon, J., Bermel, W., and Griesinger, C.
- Published
- 2006
6. The assessment of microalgae biochemistry through NMR non-invasive approach offers new perspectives for their monitoring in photobioreactors
- Author
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Bouillaud Dylan, Drouin Delphine, Farjon Jonathan, Giraudeau Patrick, and Goncalves Olivier
- Subjects
Engineering (General). Civil engineering (General) ,TA1-2040 - Published
- 2023
- Full Text
- View/download PDF
7. Magnetic field dependence of spatial frequency encoding NMR as probed on an oligosaccharide.
- Author
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Pitoux, D., Hu, Z., Plainchont, B., Merlet, D., Farjon, J., Bonnaffé, D., and Giraud, N.
- Subjects
OLIGOSACCHARIDE analysis ,NUCLEAR magnetic resonance spectroscopy ,NUCLEAR magnetic resonance ,MAGNETIC fields ,BROADBAND dielectric spectroscopy - Abstract
The magnetic field dependence of spatial frequency encoding NMR techniques is addressed through a detailed analysis of
1 H NMR spectra acquired under spatial frequency encoding on an oligomeric saccharide sample. In particular, the influence of the strength of the static magnetic field on spectral and spatial resolutions that are key features of this method is investigated. For this purpose, we report the acquisition of correlation experiments implementing broadband homodecoupling or J-edited spin evolutions, and we discuss the resolution enhancements that are provided by these techniques at two different magnetic fields. We show that performing these experiments at higher field improves the performance of high resolution NMR techniques based on a spatial frequency encoding. The significant resolution enhancements observed on the correlation spectra acquired at very high field make them valuable analytical tools that are suitable for the assignment of1 H chemical shifts and scalar couplings in molecules with highly crowded spectrum such as carbohydrates. Copyright © 2015 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
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8. Understand, elucidate and rationalize the coordination mode of pyrimidylmethylamines: an intertwined study combining NMR and DFT methods.
- Author
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Herbert Pucheta, J. E., Candy, M., Colin, O., Requet, A., Bourdreux, F., Galmiche-Loire, E., Gaucher, A., Thomassigny, C., Prim, D., Mahfoudh, M., Leclerc, E., Campagne, J.-M., and Farjon, J.
- Abstract
Conception of new pyrimidylmethylamine (pyrma) ligands and their corresponding Pd(ii) complexes has been described. Both symmetrical and non-symmetrical ligands were prepared and subjected to complexation. Two different coordination modes, Pd(N,N)– or Pd(C,N,N)–pyrma, have been evidenced depending on the substitution of the pyrimidine ring and the nature or the shape of the additional pendant arm. In a non-symmetrical pyrimidine series, the substituent-induced discrimination of each heterocyclic nitrogen atom provoked regio-controlled coordination to the metal center. The molecular structure of pyrma–Pd(ii) complexes in the solution state has been elucidated thanks to combined NMR experiments and DFT calculations. This study highlights the potency of
15 N and13 C NMR spectroscopy for the elucidation of the regio-selective coordination to the Pd(ii) in the pyrma-based complex series. DFT calculations were highly relevant to the identification of crucial factors that govern the regio-selectivity and the complexation modes. Close predicted and experimental chemical shift values put into relief the reliability of coordination modes for the most stable complexes in solution, depicted by DFT approaches. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
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9. Impurity density profile measurements with a fast filter spectrometer and a modulated diagnostic beam on Tore Supra by charge exchange recombination spectroscopy.
- Author
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Hess, W. R., Farjon, J. L., Guirlet, R., and Druetta, M.
- Subjects
- *
SPECTROMETERS , *CHARGE exchange , *MEASUREMENT - Abstract
A simple interference filter spectrometer, together with a modulated neutral diagnostic beam is used on the Tore Supra tokamak for the measurement of carbon impurity profiles by charge exchange spectroscopy. A temporal resolution of 8 ms with a good signal to noise ratio is obtained with a neutral hydrogen beam of about 1 A equivalent neutral current at the plasma edge at 45 kV. Experimental results with ion cyclotron heating show that fast changes of the heating power are followed by transient modifications of the carbon impurity profile. The evolution of the C[sup 6+] profile from peaked to hollow and back to normal can be followed step by step and a typical diffusion time of about 30 ms is measured. [ABSTRACT FROM AUTHOR]
- Published
- 2002
- Full Text
- View/download PDF
10. Understanding the Interactions of Nanoparticles and Dissolved Organic Matter at the Molecular Level by 1 H 2D Multi-Exponential Transverse Relaxation NMR Spectroscopy.
- Author
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Dia M, Farjon J, Raveleau C, Simpson A, Peyneau PE, Béchet B, and Courtier-Murias D
- Abstract
The interaction between humic acid (HA) and engineered nanoparticles (NPs) is critical in environmental sciences, especially for understanding the behavior of NPs in natural waters. This study employs
1 H 2D Multi-Exponential Transverse Relaxation (METR) NMR spectroscopy to examine the molecular-level interactions between Pahokee Peat humic acid (HA) and carboxyl-functionalized iron oxide nanoparticles (NPCOs). First,1 H 2D METR NMR spectroscopy allowed not only the identification of HA in terms of its chemical composition but also the separation of molecules with the same chemical shift values but different rates of molecular tumbling. Then, using solutions with varying NPCO concentrations (0, 10, 40, and 100 μM), we observed significant changes in the T2 relaxation times of HA components, indicating interactions between HA and NPCO. Analysis showed the biggest effect on two chemical shift regions, corresponding to lipids and carbohydrates, revealing that smaller molecules within these regions exhibit the most significant changes in T2 values upon the addition of NPCO. This suggests that these molecules are the initial sites of interaction, with the entire HA system being affected at higher NPCO concentrations. These findings highlight the utility of METR NMR spectroscopy in studying complex environmental mixtures and provide insights into the behavior of HA and NPs, essential for understanding the fate of NPs in the environment., (© 2024 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)- Published
- 2024
- Full Text
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11. Exploring the complementarity of fast multipulse and multidimensional NMR methods for metabolomics: a chemical ecology case study.
- Author
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Michaud A, Bertrand S, Akoka S, Farjon J, Martineau E, Ruiz N, Robiou du Pont T, Grovel O, and Giraudeau P
- Subjects
- Ecology methods, Metabolomics methods, Magnetic Resonance Spectroscopy methods
- Abstract
This study investigates the potential and complementarity of high-throughput multipulse and multidimensional NMR methods for metabolomics. Through a chemical ecology case study, three methods are investigated, offering a continuum of methods with complementary features in terms of resolution, sensitivity and experiment time. Ultrafast 2D COSY, adiabatic INEPT and SYMAPS HSQC are shown to provide a very good classification ability, comparable to the reference 1D
1 H NMR method. Moreover, a detailed analysis of discriminant buckets upon supervised statistical analysis shows that all methods are highly complementary, since they are able to highlight discriminant signals that could not be detected by 1D1 H NMR. In particular, fast 2D methods appear very efficient to discriminate signals located in highly crowded regions of the1 H spectrum. Overall, the combination of these recent methods within a single NMR metabolomics workflow allows to maximize the accessible metabolic information, and also raises exciting challenges in terms of NMR data analysis for chemical ecology.- Published
- 2024
- Full Text
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12. Non-uniform sampling to enhance the performance of compact NMR for characterizing new psychoactive substances.
- Author
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Castaing-Cordier T, Crasnier S, Dubois D, Ladroue V, Buleté A, Prudhomme C, Charvoz C, Besacier F, Jacquemin D, Giraudeau P, and Farjon J
- Subjects
- Magnetic Resonance Spectroscopy methods, Magnetic Resonance Imaging
- Abstract
Efficient and robust analytical methods are needed to improve the identification and subsequent regulation of new psychoactive substances (NPS). NMR spectroscopy is a unique method able to determine the structure of small molecules such as NPS even in mixtures. However, high-field NMR analysis is associated with expensive purchase and maintenance costs. For more than a decade, compact NMR spectrometers have changed this paradigm. It was recently shown that a dedicated analytical workflow combining compact NMR and databases could identify the molecular structure of NPS, in spite of the lower spectral dispersion and sensitivity of compact spectrometers. This approach relies on
1 H-13 C HSQC to both recognize NPS and elucidate the structure of unknown substances. Still, its performance is limited by the need to compromise between resolution and experiment time. Here, we show that this strategy can be significantly improved by implementing non-uniform sampling (NUS) to improve spectral resolution in the13 C dimension of HSQC at no cost in terms of experiment time. Gains in the range of 3 to 4 in resolution are achieved for pure NPS and for a mixture. Finally, 2D HSQC with NUS was applied to improve the identification of NPS with the assistance of databases. The resulting method appears as a useful tool for the characterization of NPS in mixtures, which is essential for forensic laboratories., (© 2023 The Authors. Magnetic Resonance in Chemistry published by John Wiley & Sons Ltd.)- Published
- 2024
- Full Text
- View/download PDF
13. Optimization of heteronuclear ultrafast 2D NMR for the study of complex mixtures hyperpolarized by dynamic nuclear polarization.
- Author
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Praud C, Ribay V, Dey A, Charrier B, Mandral J, Farjon J, Dumez JN, and Giraudeau P
- Abstract
Hyperpolarized
13 C NMR at natural abundance, based on dissolution dynamic nuclear polarization (d-DNP), provides rich, sensitive and repeatable13 C NMR fingerprints of complex mixtures. However, the sensitivity enhancement is associated with challenges such as peak overlap and the difficulty to assign hyperpolarized13 C signals. Ultrafast (UF) 2D NMR spectroscopy makes it possible to record heteronuclear 2D maps of d-DNP hyperpolarized samples. Heteronuclear UF 2D NMR can provide correlation peaks that link quaternary carbons and protons through long-range scalar couplings. Here, we report the analytical assessment of an optimized UF long-range HETCOR pulse sequence, applied to the detection of metabolic mixtures at natural abundance and hyperpolarized by d-DNP, based on repeatability and sensitivity considerations. We show that metabolite-dependent limits of quantification in the range of 1-50 mM (in the sample before dissolution) can be achieved, with a repeatability close to 10% and a very good linearity. We provide a detailed comparison of such analytical performance in two different dissolution solvents, D2 O and MeOD. The reported pulse sequence appears as an useful analytical tool to facilitate the assignment and integration of metabolite signals in hyperpolarized complex mixtures.- Published
- 2023
- Full Text
- View/download PDF
14. Characterization of new psychoactive substances by integrating benchtop NMR to multi-technique databases.
- Author
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Castaing-Cordier T, Benavides Restrepo A, Dubois D, Ladroue V, Besacier F, Buleté A, Charvoz C, Goupille A, Jacquemin D, Giraudeau P, and Farjon J
- Subjects
- Amphetamines, Humans, Psychotropic Drugs analysis, Seizures, Cannabinoids, Illicit Drugs chemistry
- Abstract
New psychoactive substances (NPS) have become a serious threat for public health due to their ability to be sold in the street or on internet. NPS are either derived from commercial drugs which are misused (recreational rather than medical use) or whose structure is slightly modified. To regulate NPS, it is essential to accurately characterize them, either to recognize molecules that were previously identified or to quickly elucidate the structure of unknown ones. Most approaches rely on the determination of the exact mass obtained by high-resolution mass spectrometry requiring expensive equipment. This motivated us to develop a workflow in which the elucidation is assisted with databases and does not need the exact mass. This workflow combines 1D and 2D NMR measurements performed on a benchtop spectrometer with IR spectroscopy, for creating a multi-technique database to characterize pure and mixed NPS. The experimental database was created with 57 entries mostly coming from seizures, mainly cathinones, cannabinoids, amphetamines, arylcyclohexylamines, and fentanyl. A blind validation of the workflow was carried out on a set of six unknown seizures. In the first three cases, AF, AB-FUBINACA, and a mixture of 2C-I and 2C-E could be straightforwardly identified with the help of their reference spectra in the database. The two next samples were elucidated for the first time with the help of the database to reveal NEK and MPHP substances. Finally, a precise quantification of each characterized NPS was obtained in order to track NPS trafficking networks., (© 2022 The Authors. Drug Testing and Analysis published by John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
15. High-field and benchtop NMR spectroscopy for the characterization of new psychoactive substances.
- Author
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Castaing-Cordier T, Ladroue V, Besacier F, Bulete A, Jacquemin D, Giraudeau P, and Farjon J
- Subjects
- Chromatography, High Pressure Liquid, Humans, Mass Spectrometry, Illicit Drugs chemistry, Magnetic Resonance Spectroscopy instrumentation, Psychotropic Drugs chemistry
- Abstract
New psychoactive substances (NPS) have become a serious threat to public health in Europe due to their ability to be sold in the street or on the darknet. Regulating NPS is an urgent priority but comes with a number of analytical challenges since they are structurally similar to legal products. A number of analytical techniques can be used for identifying NPS, among which NMR spectroscopy is a gold standard. High field NMR is typically used for structural elucidation in combination with others techniques like GC-MS, Infrared spectroscopy, together with databases. In addition to their strong ability to elucidate molecular structures, high field NMR techniques are the gold standard for quantification without any physical isolation procedure and with a single internal standard. However, high field NMR remains expensive and emerging "benchtop" NMR apparatus which are cheaper and transportable can be considered as valuable alternatives to high field NMR. Indeed, benchtop NMR, which emerged about ten years ago, makes it possible to carry out structural elucidation and quantification of NPS despite the gap in resolution and sensitivity as compared to high field NMR. This review describes recent advances in the field of NMR applied to the characterization of NPS. High-field NMR methods are first described in view of their complementarity with other analytical methods, focusing on both structural and quantitative aspects. The second part of the review highlights how emerging benchtop NMR approaches could act as a game changer in the field of forensics., Competing Interests: Declarations of interest None., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
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16. Gut bacteria are essential for normal cuticle development in herbivorous turtle ants.
- Author
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Duplais C, Sarou-Kanian V, Massiot D, Hassan A, Perrone B, Estevez Y, Wertz JT, Martineau E, Farjon J, Giraudeau P, and Moreau CS
- Subjects
- Amino Acids metabolism, Animals, Ants metabolism, Ants microbiology, Chitin biosynthesis, Insect Proteins biosynthesis, Nitrogen metabolism, Animal Shells growth & development, Ants growth & development, Gastrointestinal Microbiome physiology, Herbivory physiology, Symbiosis physiology
- Abstract
Across the evolutionary history of insects, the shift from nitrogen-rich carnivore/omnivore diets to nitrogen-poor herbivorous diets was made possible through symbiosis with microbes. The herbivorous turtle ants Cephalotes possess a conserved gut microbiome which enriches the nutrient composition by recycling nitrogen-rich metabolic waste to increase the production of amino acids. This enrichment is assumed to benefit the host, but we do not know to what extent. To gain insights into nitrogen assimilation in the ant cuticle we use gut bacterial manipulation,
15 N isotopic enrichment, isotope-ratio mass spectrometry, and15 N nuclear magnetic resonance spectroscopy to demonstrate that gut bacteria contribute to the formation of proteins, catecholamine cross-linkers, and chitin in the cuticle. This study identifies the cuticular components which are nitrogen-enriched by gut bacteria, highlighting the role of symbionts in insect evolution, and provides a framework for understanding the nitrogen flow from nutrients through bacteria into the insect cuticle.- Published
- 2021
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17. Merging Gradient-Based Methods to Improve Benchtop NMR Spectroscopy: A New Tool for Flow Reaction Optimization.
- Author
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Kunjir S, Rodriguez-Zubiri M, Coeffard V, Felpin FX, Giraudeau P, and Farjon J
- Abstract
Emerging low cost, compact NMR spectrometers that can be connected in-line to a flow reactor are suited to study reaction mixtures. The main limitation of such spectrometers arises from their lower magnetic field inducing a reduced sensitivity and a weaker spectral resolution. For enhancing the spectral resolution, the merging of Pure-Shift methods recognized for line narrowing with solvent elimination schemes was implemented in the context of mixtures containing protonated solvents. One more step was achieved to further enhance the resolution power on compact systems, thanks to multiple elimination schemes prior to Pure-Shift pulse sequence elements. For the first time, we were able to remove up to 6 protonated solvent signals simultaneously by dividing their intensity by 500 to 1700 with a concomitant spectral resolution enhancement for signals of interest from 9 to 12 as compared to the standard 1D
1 H. Then, the potential of this new approach was shown on the flow synthesis of a complex benzoxanthenone structure., (© 2020 Wiley-VCH GmbH.)- Published
- 2020
- Full Text
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18. Gradient-based pulse sequences for benchtop NMR spectroscopy.
- Author
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Gouilleux B, Farjon J, and Giraudeau P
- Abstract
Benchtop NMR spectroscopy has been on the rise for the last decade, by bringing high-resolution NMR in environments that are not easily compatible with high-field NMR. Benchtop spectrometers are accessible, low cost and show an impressive performance in terms of sensitivity with respect to the relatively low associated magnetic field (40-100 MHz). However, their application is limited by the strong and ubiquitous peak overlaps arising from the complex mixtures which are often targeted, often characterized by a great diversity of concentrations and by strong signals from non-deuterated solvents. Such limitations can be addressed by pulse sequences making clever use of magnetic field gradient pulses, capable of performing efficient coherence selection or encoding chemical shift or diffusion information. Gradients pulses are well-known ingredients of high-field pulse sequence recipes, but were only recently made available on benchtop spectrometers, thanks to the introduction of gradient coils in 2015. This article reviews the recent methodological advances making use of gradient pulses on benchtop spectrometers and the applications stemming from these developments. Particular focus is made on solvent suppression schemes, diffusion-encoded, and spatially-encoded experiments, while discussing both methodological advances and subsequent applications. We eventually discuss the exciting development and application perspectives that result from such advances., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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19. Multinuclear NMR in polypeptide liquid crystals: Three fertile decades of methodological developments and analytical challenges.
- Author
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Lesot P, Aroulanda C, Berdagué P, Meddour A, Merlet D, Farjon J, Giraud N, and Lafon O
- Subjects
- Anisotropy, Deuterium chemistry, Stereoisomerism, Liquid Crystals chemistry, Nuclear Magnetic Resonance, Biomolecular, Peptides chemistry
- Abstract
NMR spectroscopy of oriented samples makes accessible residual anisotropic intramolecular NMR interactions, such as chemical shift anisotropy (RCSA), dipolar coupling (RDC), and quadrupolar coupling (RQC), while preserving high spectral resolution. In addition, in a chiral aligned environment, enantiomers of chiral molecules or enantiopic elements of prochiral compounds adopt different average orientations on the NMR timescale, and hence produce distinct NMR spectra or signals. NMR spectroscopy in chiral aligned media is a powerful analytical tool, and notably provides unique information on (pro)chirality analysis, natural isotopic fractionation, stereochemistry, as well as molecular conformation and configuration. Significant progress has been made in this area over the three last decades, particularly using polypeptide-based chiral liquid crystals (CLCs) made of organic solutions of helically chiral polymers (as PBLG) in organic solvents. This review presents an overview of NMR in polymeric LCs. In particular, we describe the theoretical tools and the major NMR methods that have been developed and applied to study (pro)chiral molecules dissolved in such oriented solvents. We also discuss the representative applications illustrating the analytical potential of this original NMR tool. This overview article is dedicated to thirty years of original contributions to the development of NMR spectroscopy in polypeptide-based chiral liquid crystals., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2020
- Full Text
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20. Non-Heme Fe II Diastereomeric Complexes Bearing a Hexadentate Ligand: Unexpected Consequences for the Spin State and Catalytic Oxidation Properties.
- Author
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Sénéchal-David K, Buron C, Ségaud N, Rebilly JN, Dos Santos A, Farjon J, Guillot R, Herrero C, Inceoglu T, and Banse F
- Abstract
The reactivity and selectivity of non-heme Fe
II complexes as oxidation catalysts can be substantially modified by alteration of the ligand backbone or introduction of various substituents. In comparison with the hexadentate ligand N,N,N',N'-tetrakis(pyridin-2-ylmethyl)ethane-1,2-diamine (TPEN), N,N'-bis[1-(pyridin-2-yl)ethyl]-N,N'-bis(pyridin-2-ylmethyl)ethane-1,2-diamine (2Me L6 2 ) has a methyl group on two of the four picolyl positions. FeII complexation by2Me L6 2 yields two diastereomeric complexes with very similar structures, which only differ in the axial/equatorial positions occupied by the methylated pyridyl groups. In solution, these two isomers exhibit different magnetic behaviors. Whereas one isomer exhibits temperature-dependent spin-state conversion between the S=0 and S=2 states, the other is more reluctant towards this spin-state equilibrium and is essentially diamagnetic at room temperature. Their catalytic properties for the oxidation of anisole by H2 O2 are very different and correlate with their magnetic properties, which reflect their lability/inertness. These different properties most likely depend on the different steric constraints of the methylated pyridyl groups in the two complexes., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
- Full Text
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21. Benchtop NMR for the monitoring of bioprocesses.
- Author
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Bouillaud D, Farjon J, Gonçalves O, and Giraudeau P
- Subjects
- Adenosine Triphosphate analysis, Animals, Bioreactors, Humans, Lipids analysis, Magnetic Resonance Imaging methods, Metabolome, Microalgae chemistry, Magnetic Resonance Spectroscopy methods
- Abstract
This mini-review highlights the potential of benchtop nuclear magnetic resonance (NMR) for the monitoring of bioprocesses. It describes recent perspectives opened by the reduced size of devices in relaxometry, magnetic resonance imaging and NMR spectroscopy. In particular, the recent emergence of the benchtop NMR spectroscopy gives access to many applications thanks to the implementation of advanced experiments., (© 2018 John Wiley & Sons, Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
22. Highly Resolved Pure-Shift Spectra on a Compact NMR Spectrometer.
- Author
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Castaing-Cordier T, Bouillaud D, Bowyer P, Gonçalves O, Giraudeau P, and Farjon J
- Abstract
Benchtop NMR spectrometers experience a great success for a wide range of applications. However, their performance is highly limited by peak overlaps. Emerging "pure-shift NMR" (PS NMR) methods have been intensively used at high field to enhance the resolution by homodecoupling strategies. Here, different PS methods have been implemented on a compact NMR spectrometer operating at 43 MHz. Among the PS methods, the recent PSYCHE scheme appears more sensitive than Zangger-Sterk (ZS) experiments and offers a substantial resolution improvement as compared to 1D
1 H. On the other hand, despite their slightly lower sensitivity, ZS methods are more efficient to reduce broad signals and are more immune to strong couplings. Finally, the classical J-resolved pulse sequence is more efficient to reduce larger signals for bigger-sized molecules. The three approaches appear relevant for benchtop NMR and their combination forms an efficient toolbox to analyze a great diversity of samples., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
- Full Text
- View/download PDF
23. Quantification of natural products in herbal supplements: A combined NMR approach applied on goldenseal.
- Author
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Le PM, Milande C, Martineau E, Giraudeau P, and Farjon J
- Subjects
- Alkaloids analysis, Alkaloids isolation & purification, Benzylisoquinolines analysis, Benzylisoquinolines chemistry, Benzylisoquinolines isolation & purification, Berberine analogs & derivatives, Berberine analysis, Berberine chemistry, Berberine isolation & purification, Biological Products analysis, Biological Products chemistry, Chromatography, High Pressure Liquid methods, Magnetic Resonance Imaging, Mass Spectrometry methods, Plant Extracts analysis, Plant Roots, Reproducibility of Results, Alkaloids chemistry, Hydrastis chemistry, Magnetic Resonance Spectroscopy methods, Plant Extracts chemistry
- Abstract
Authentication of natural products is of major relevance in the context of manufactured drugs or herbal supplements since such active products generate a lucrative market. The analytical method to identify and quantify valuable natural products is critical for quality control and product assignment of herbal supplements. In this framework, we propose to apply a recently developed quantitative 2D NMR approach called Q QUIPU (Quick QUantItative Perfected and pUre shifted) in combination with 1D
1 H NMR capable to access the concentration of three major alkaloids, berberine, β-hydrastine and canadine, in the root extract of goldenseal (Hydrastis canadensis), one of the 20 most popular herbal supplements used worldwide. We highlight the complementarity of 1D and 2D quantitative NMR to accurately assess the amount of alkaloids with different range of concentrations and stability within extracts. In particular, unstable natural products having non-overlapped signals like berberine could only be quantified by sensitive and fast 1D1 H, while overlapped signals of β-hydrastine and low intense ones of canadine could only be quantified with the recent 2D Q QUIPU HSQC. Results obtained from this combined approach have led to a good accuracy (<10%) as compared with coupled UHPLC-MS/UV techniques. This quantitative NMR approach paves the way to numerous applications where the accurate quantification of targeted compounds in complex mixtures is required, for instance in agricultural, food and pharmaceuticals products., (Crown Copyright © 2018. Published by Elsevier B.V. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
24. Robust 1D NMR lineshape fitting using real and imaginary data in the frequency domain.
- Author
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Sokolenko S, Jézéquel T, Hajjar G, Farjon J, Akoka S, and Giraudeau P
- Abstract
Quantitative NMR is intrinsically dependent on precise, accurate, and robust peak area calculation. In this work, we demonstrate how the use of complex-valued peak descriptions can improve peak fitting in the frequency domain - incorporating phase and baseline correction as well as apodization while working with commonly used Fourier-transformed data. The method has been implemented in an open source R package called rnmrfit that is available for download on GitHub (https://github.com/ssokolen/rnmrfit). Application to real data suggests that this approach can also result in dramatically higher precision than can be achieved with existing software. Simulation data indicates that coefficients of variation below 0.1% can be readily achieved at signal to noise (SNR) ratios of approximately 100. The use of complex-valued data in the frequency domain is demonstrated as a relatively simple and effective means of improving peak fitting for quantitative NMR analysis., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
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25. Diffusion-ordered spectroscopy on a benchtop spectrometer for drug analysis.
- Author
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Assemat G, Gouilleux B, Bouillaud D, Farjon J, Gilard V, Giraudeau P, and Malet-Martino M
- Subjects
- Chemistry Techniques, Analytical methods, Diffusion, Magnetic Resonance Spectroscopy instrumentation, Magnetic Resonance Spectroscopy methods, Pharmaceutical Preparations analysis
- Abstract
The first reported two-dimensional diffusion-ordered spectroscopy (DOSY) experiments were recorded at low field (LF) on a benchtop NMR spectrometer using the BPP-STE-LED (bipolar pulse pair-stimulated echo sequence with a longitudinal eddy current delay) pulse sequence which limits phase anomalies and baseline discrepancies. A LF DOSY map was first obtained from a solution of a model pharmaceutical formulation containing a macromolecule and an active pharmaceutical ingredient. It revealed a clear separation between the components of the mixture and gave apparent diffusion coefficients (ADC) values consistent with those measured from the reference high field experiment. LF DOSY was then applied to a real esomeprazole medicine and several gradient sampling schemes (linear, exponential and semi-gaussian (SG)) were compared. With a pulsed field gradient range of 4-70%, the most reliable results were given by the SG ramp. The resulting LF DOSY map obtained after 2.84 h of acquisition confirmed that the diffusion dimension is of prime interest to facilitate the assignment of overcrowded LF spectra although relevant ADC values could not be obtained in part of the spectrum with highly overlapped signals., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
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26. One-Pot Synthesis of Functionalized Fused Furans via a BODIPY-Catalyzed Domino Photooxygenation.
- Author
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Mauger A, Farjon J, Nun P, and Coeffard V
- Abstract
Six-membered ring fused furans containing a tetrasubstituted tertiary carbon were prepared in an unprecedented one-pot BODIPY-catalyzed domino photooxygenation/reduction process. A series of functionalized furans was synthesized from readily available 2-alkenylphenols and mechanistic studies were performed to account for the domino photosensitized oxygenation., (© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2018
- Full Text
- View/download PDF
27. The FAQUIRE Approach: FAst, QUantitative, hIghly Resolved and sEnsitivity Enhanced 1 H, 13 C Data.
- Author
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Farjon J, Milande C, Martineau E, Akoka S, and Giraudeau P
- Subjects
- Amino Acids analysis, Breast Neoplasms chemistry, Carbon Isotopes analysis, Cell Line, Tumor, Choline analysis, Female, Humans, Hydrogen analysis, Inositol analysis, Lactic Acid analysis, Magnetic Resonance Spectroscopy economics, Time Factors, Magnetic Resonance Spectroscopy methods
- Abstract
The targeted analysis of metabolites in complex mixtures is a challenging issue. NMR is one of the major tools in this field, but there is a strong need for more sensitive, better-resolved, and faster quantitative methods. In this framework, we introduce the concept of FAst, QUantitative, hIghly Resolved and sEnsitivity enhanced (FAQUIRE) NMR to push forward the limits of metabolite NMR analysis. 2D
1 H,13 C 2D quantitative maps are promising alternatives for enhancing the spectral resolution but are highly time-consuming because of (i) the intrinsic nature of 2D, (ii) the longer recycling times required for quantitative conditions, and (iii) the higher number of scans needed to reduce the level of detection/quantification to access low concentrated metabolites. To reach this aim, speeding up the recently developed QUantItative Perfected and pUre shifted HSQC (QUIPU HSQC) is an interesting attempt to develop the FAQUIRE concept. Thanks to the combination of spectral aliasing, nonuniform sampling, and variable repetition time, the acquisition time of 2D quantitative maps is reduced by a factor 6 to 9, while conserving a high spectral resolution thanks to a pure shift approach. The analytical potential of the new Quick QUIPU HSQC (Q QUIPU HSQC) is evaluated on a model metabolite sample, and its potential is shown on breast-cell extracts embedding metabolites at millimolar to submillimolar concentrations.- Published
- 2018
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28. How to face the low intrinsic sensitivity of 2D heteronuclear NMR with fast repetition techniques: go faster to go higher!
- Author
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Farjon J
- Abstract
Nuclear magnetic resonance (NMR) is one of the most widely used analytical techniques in numerous domains where molecules are objects of investigation. However, major limitations of multidimensional NMR experiments come from their low sensitivity and from the long times needed for their acquisition. In order to overcome such limitations, fast repetition NMR techniques allowed for the reduction of 2D experimental time and for the conversion of the gained time into a higher number of scans leading to a better sensitivity. Thus, fast repetition 2D heteronuclear NMR techniques have allowed new advances in NMR, especially to access infomation on low abundant nuclei, to enhance the detection of low concentrated compounds and to probe weak interactions like hydrogen bonds at natural abundance. Copyright © 2017 John Wiley & Sons, Ltd., (Copyright © 2017 John Wiley & Sons, Ltd.)
- Published
- 2017
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29. Synthesis of ribavirin 2'-Me- C -nucleoside analogues.
- Author
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Cosson F, Faroux A, Baltaze JP, Farjon J, Guillot R, Uziel J, and Lubin-Germain N
- Abstract
An efficient synthetic pathway leading to two carbonated analogues of ribavirin is described. The key-steps in the synthesis of these ribosyltriazoles bearing a quaternary carbon atom in the 2'-position are an indium-mediated alkynylation and a 1,3-dipolar cyclization.
- Published
- 2017
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30. Correction: Achieving high resolution and optimizing sensitivity in spatial frequency encoding NMR spectroscopy: from theory to practice.
- Author
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Plainchont B, Pitoux D, Hamdoun G, Ouvrard JM, Merlet D, Farjon J, and Giraud N
- Abstract
Correction for 'Achieving high resolution and optimizing sensitivity in spatial frequency encoding NMR spectroscopy: from theory to practice' by Bertrand Plainchont et al., Phys. Chem. Chem. Phys., 2016, 18, 22827-22839.
- Published
- 2016
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31. Achieving high resolution and optimizing sensitivity in spatial frequency encoding NMR spectroscopy: from theory to practice.
- Author
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Plainchont B, Pitoux D, Hamdoun G, Ouvrard JM, Merlet D, Farjon J, and Giraud N
- Abstract
A detailed analysis of NMR spectra acquired based on spatial frequency encoding is presented. A theoretical model to simulate gradient encoded pulses is developed in order to describe the spatial properties of the NMR signals that are locally created throughout the sample. The key features that affect the efficiency of the slice selection process during excitation as well as refocusing pulses are investigated on a model ABX spin system, both theoretically and experimentally. It is shown that the sensitivity and resolution of the pure shift and J-edited experiments based on a spatial frequency encoding can be optimized to a point where high-resolution techniques based on a spatial frequency encoding approach show optimal performance compared to other methods.
- Published
- 2016
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32. Sensitive, highly resolved, and quantitative (1)H-(13)C NMR data in one go for tracking metabolites in vegetal extracts.
- Author
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Mauve C, Khlifi S, Gilard F, Mouille G, and Farjon J
- Subjects
- Arabidopsis chemistry, Arabidopsis metabolism, Plant Leaves chemistry, Plant Leaves metabolism, Plants metabolism, Carbon-13 Magnetic Resonance Spectroscopy, Plant Extracts chemistry, Plants chemistry, Proton Magnetic Resonance Spectroscopy
- Abstract
The quantification of metabolites is essential for understanding and improving biological systems. With the aim to quantify in one map a complex mixture composed of low concentrated metabolites, a new experiment called the (1)H-(13)C QUIPU HSQC allows improving of both resolution and sensitivity for investigation of vegetal extracts.
- Published
- 2016
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- View/download PDF
33. Deciphering the Conformational Choreography of Zinc Coordination Complexes with Standard and Novel Proton NMR Techniques Combined with DFT Methods.
- Author
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Pucheta JE, Prim D, Gillet JM, and Farjon J
- Abstract
The presence of water has been shown to deeply impact the stability and geometry of Zn complexes in solution. Evidence for tetra- and penta-coordinated species in a pyridylmethylamine-Zn(II) model complex is presented. Novel (1) H NMR tools such as T1 -filtered selective exchange spectroscopy and pure shifted gradient-encoded selective refocusing as well as classical 2D ((1) H-(1) H) exchange spectroscopy, diffusion-ordered spectroscopy and T1 ((1) H) measurements, in combination with density functional theory methods allow the full conformational dynamics of a pyridylmethylamine-Zn(II) complex to be revealed. Four conformers and two families of complexes depending on the hydration states are elucidated., (© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2016
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34. Fine Tuning of β-Peptide Foldamers: a Single Atom Replacement Holds Back the Switch from an 8-Helix to a 12-Helix.
- Author
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Altmayer-Henzien A, Declerck V, Farjon J, Merlet D, Guillot R, and Aitken DJ
- Subjects
- Circular Dichroism, Protein Conformation, Spectrophotometry, Infrared, Peptides chemistry
- Abstract
Cyclic homologated amino acids are important building blocks for the construction of helical foldamers. N-aminoazetidine-2-carboxylic acid (AAzC), an aza analogue of trans-2-aminocyclobutanecarboxylic acid (tACBC), displays a strong hydrazino turn conformational feature, which is proposed to act as an 8-helix primer. tACBC oligomers bearing a single N-terminal AAzC residue were studied to evaluate the ability of AAzC to induce and support an 8-helix along the oligopeptide length. While tACBC homooligomers assume a dominant 12-helix conformation, the aza-primed oligomers preferentially adopt a stabilized 8-helix conformation for an oligomer length up to 6 residues. The (formal) single-atom exchange at the N terminus of a tACBC oligomer thus contributes to the sustainability of the 8-helix, which resists the switch to a 12-helix. This effect illustrates atomic-level programmable design for fine tuning of peptide foldamer architectures., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
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35. Fully resolved NMR correlation spectroscopy.
- Author
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Pitoux D, Plainchont B, Merlet D, Hu Z, Bonnaffé D, Farjon J, and Giraud N
- Abstract
A new correlation experiment cited as "push-G-SERF" is reported. In the resulting phased 2D spectrum, the chemical shift information is selected along the direct dimension, whereas scalar couplings involving a selected proton nucleus are edited in the indirect domain. The robustness of this pulse sequence is demonstrated on compounds with increasing structural and spectral complexity, using state-of-the-art spectrometers. It allows for full resolution of both dimensions of the spectrum, yielding a straightforward assignment and measurement of the coupling network around a given proton in the molecule. This experiment is intended for chemists who want to address efficiently the structural analysis of molecules with an overcrowded spectrum., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
- Full Text
- View/download PDF
36. Pushing the limits of signal resolution to make coupling measurement easier.
- Author
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Herbert Pucheta JE, Pitoux D, Grison CM, Robin S, Merlet D, Aitken DJ, Giraud N, and Farjon J
- Subjects
- Limit of Detection, Magnetic Resonance Spectroscopy methods, Peptides chemistry
- Abstract
Probing scalar couplings are essential for structural elucidation in molecular (bio)chemistry. While the measurement of JHH couplings is facilitated by SERF experiments, overcrowded signals represent a significant limitation. Here, a new band selective pure shift SERF allows access to δ(1)H and JHH with an ultrahigh spectral resolution.
- Published
- 2015
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- View/download PDF
37. Pyridylalkylamine ligands and their palladium complexes: structure and reactivity revisited by NMR.
- Author
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Requet A, Colin O, Bourdreux F, Salim SM, Marque S, Thomassigny C, Greck C, Farjon J, and Prim D
- Abstract
Pyridylmethylamines or pma are versatile platforms for different catalytic transformations. Five pma-ligands and their respective Pd complexes have been studied by liquid state NMR. By comparing (1)H, (13)C and (15)N chemical shifts for each pma/pma-Pd couple, a general trend for the metallacycle atoms concerns variations of the electronic distribution at the pendant arm, especially at the nitrogen atom of the ligand. Moreover, the increase of the chemical shift of the pendant arm nitrogen atom from primary to tertiary amine is also related to the increase of crowding within the complex. This statement is in good agreement with X-ray data collected for several complexes. Catalytic results for the Suzuki-Miyaura reaction involving the pma-Pd complexes showed within this series that a sterically crowded and electron-rich ligand in the metallacycle was essential to reach the coupling product with a good selectivity. In this context, NMR study of chemical shifts of all active nuclei especially in the metallacycle could give a trend of reactivity in the studied family of pma-Pd complexes., (Copyright © 2014 John Wiley & Sons, Ltd.)
- Published
- 2014
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38. SENSASS NMR: New NMR techniques for enhancing the sensitivity and the spectral resolution of polymer supported chemicals.
- Author
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Prosa N, Scherrmann MC, Merlet D, and Farjon J
- Abstract
The use of polyethylene glycols (PEGs) as organic polymer soluble supports for synthesis has been receiving growing interest. The main advantages of using PEGs as support are related to their non-toxicity, their commercial availability and their solubility properties allowing easy recovery and analysis of compounds linked to the polymer. The NMR characterization of PEG-branched products could however be difficult due to the presence of huge signals of the polymeric support. In order to overcome this problem, we developed new NMR experiments named SENSitivity increAsed and resolution enhanced by Signal Suppression or SENSASS NMR. These experiments implement either semi-selective pulses or Water Gate sequences for reducing signals of the polymer as well as fast pulsing techniques optimizing the recycling delay for enhancing the sensitivity of signals. They have been successfully implemented in classical NMR characterization experiments namely, COSY, HSQC and HMBC experiments., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
39. Fast-pulsing NMR techniques for the detection of weak interactions: successful natural abundance probe of hydrogen bonds in peptides.
- Author
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Altmayer-Henzien A, Declerck V, Aitken DJ, Lescop E, Merlet D, and Farjon J
- Subjects
- Hydrogen Bonding, Protein Structure, Secondary, Nuclear Magnetic Resonance, Biomolecular, Peptides chemistry
- Abstract
Structural investigations of peptides using NMR spectroscopy rarely include the detection of N-H···O=C and N-H···N hydrogen bonds, because the relevant heteronuclei have a low natural abundance while the small trans hydrogen bond scalar couplings reduce the sensitivity. Fast repetition NMR techniques combined with state of the art spectrometer specifications allowed the enhancement of the sensitivity for detection of hydrogen bonds at natural isotopic abundance.
- Published
- 2013
- Full Text
- View/download PDF
40. Synthesis of a Mycobacterium tuberculosis tetra-acylated sulfolipid analogue and characterization of the chiral acyl chains using anisotropic NAD 2D-NMR spectroscopy.
- Author
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Lemétais A, Bourdreux Y, Lesot P, Farjon J, and Beau JM
- Subjects
- Anisotropy, Lipids chemistry, Magnetic Resonance Spectroscopy, Molecular Conformation, Deuterium chemistry, Lipids chemical synthesis, Mycobacterium tuberculosis chemistry
- Abstract
Tetra-O-acylated sulfolipids are metabolites found in the cell wall of Mycobacterium tuberculosis, the causative agent of tuberculosis. Their role in pathogenesis remains, however, undefined. Here we describe a novel access to model tetra-O-acylated trehalose sulfate derivatives having simple acyl chains. The trehalose core was regioselectively protected using a tandem procedure with catalytic iron(III) chloride hexahydrate and further desymmetrized. Model chiral fatty acids, prepared by a zinc-mediated cross-coupling, were incorporated into the trehalose core. The enantiomeric excess of the chiral fatty acids has been measured by natural abundance deuterium (NAD) 2D-NMR spectroscopy in a polypeptide based chiral liquid crystal. The synthetic approach established for the model compounds can easily be developed for the preparation of other analogues and natural sulfolipids.
- Published
- 2013
- Full Text
- View/download PDF
41. Solution state conformational preferences of dipeptides derived from N-aminoazetidinecarboxylic acid: an assessment of the hydrazino turn.
- Author
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Altmayer-Henzien A, Declerck V, Merlet D, Baltaze JP, Farjon J, Guillot R, and Aitken DJ
- Subjects
- Crystallography, X-Ray, Hydrogen Bonding, Models, Chemical, Nuclear Magnetic Resonance, Biomolecular, Protein Structure, Secondary, Solutions, Stereoisomerism, Thermodynamics, Azetidinecarboxylic Acid analogs & derivatives, Azetidinecarboxylic Acid chemistry, Carboxylic Acids chemistry, Cyclobutanes chemistry, Dipeptides chemical synthesis, Hydrazines chemistry
- Abstract
Four model compounds and four dipeptides containing N-aminoazetidinecarboxylic acid (AAzC) and a particular stereoisomer of 2-aminocyclobutanecarboxylic acid (ACBC) were studied to establish their solution state conformational preferences, particularly regarding the ability of AAzC to induce a three-center hydrogen-bonded folding feature known as a "hydrazino turn". On the basis of IR and NMR experiments, supported by molecular modeling, the AAzC residue adopted a trans configuration amenable to the formation of a cyclic eight-membered hydrogen bond conformation in solution, in all cases studied. The implication of the heterocyclic nitrogen atom of AAzC in the trans-like structure was demonstrated via a refined (1)H-(15)N HMBC experiment giving exploitable data at natural (15)N isotopic abundance, providing unprecedented evidence for the solution state hydrazino turn conformation. The predominance of this secondary structural feature depended on the configuration of the neighboring ACBC residue in the dipeptides: while the trans-ACBC derivatives prefer the hydrazino turn, the cis-ACBC derivatives may also populate low-energy 10-membered hydrogen-bonded ring structures. X-ray diffraction analysis of three compounds confirmed the presence of a solid state hydrazino turn in two cases, with geometries similar to those deduced from the solution state studies, but in the third compound, no intramolecular hydrogen-bonding feature was in evidence.
- Published
- 2013
- Full Text
- View/download PDF
42. 29Si-1H IMPACT HMBC: a suitable tool for analyzing silylated derivatives.
- Author
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Farjon J, Giros A, Deloisy S, Blanco L, Hannedouche J, Schulz E, and Merlet D
- Subjects
- Isotopes chemistry, Magnetic Resonance Spectroscopy standards, Molecular Structure, Organometallic Compounds chemical synthesis, Organosilicon Compounds chemical synthesis, Protons, Reference Standards, Organometallic Compounds analysis, Organosilicon Compounds analysis, Silicon chemistry
- Abstract
A modified version of the IMPACT heteronuclear multiple bond correlation (HMBC) has allowed the characterization of an organosilane and a tetrasilylated yttrium complex. With the help of this sequence, an average gain in sensitivity close to 2 has been obtained compared with the standard HMBC experiment for disilanes as well as for yttrium complexes containing silylated ligands. This modified version of this long-range correlation experiment opens the way for following kinetics in the range of a fraction of a minute and to study by NMR low concentrated samples and low abundant nuclei., (Copyright © 2013 John Wiley & Sons, Ltd.)
- Published
- 2013
- Full Text
- View/download PDF
43. Iron coordination chemistry with new ligands containing triazole and pyridine moieties. Comparison of the coordination ability of the N-donors.
- Author
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Ségaud N, Rebilly JN, Sénéchal-David K, Guillot R, Billon L, Baltaze JP, Farjon J, Reinaud O, and Banse F
- Subjects
- Catalysis, Ligands, Molecular Structure, Coordination Complexes chemistry, Iron chemistry, Nitrogen Compounds chemistry, Pyridines chemistry, Triazoles chemistry
- Abstract
We report the synthesis, characterization, and solution chemistry of a series of new Fe(II) complexes based on the tetradentate ligand N-methyl-N,N'-bis(2-pyridyl-methyl)-1,2-diaminoethane or the pentadentate ones N,N',N'-tris(2-pyridyl-methyl)-1,2-diaminoethane and N,N',N'-tris(2-pyridyl-methyl)-1,3-diaminopropane, modified by propynyl or methoxyphenyltriazolyl groups on the amino functions. Six of these complexes are characterized by X-ray crystallography. In particular, two of them exhibit an hexadentate coordination environment around Fe(II) with two amino, three pyridyl, and one triazolyl groups. UV-visible and cyclic voltammetry experiments of acetonitrile solutions of the complexes allow to deduce accurately the structure of all Fe(II) species in equilibrium. The stability of the complexes could be ranked as follows: [L(5)Fe(II)-py](2+) > [L(5)Fe(II)-Cl](+) > [L(5)Fe(II)-triazolyl](2+) > [L(5)Fe(II)-(NCMe)](2+), where L(5) designates a pentadentate coordination sphere composed of the two amines of ethanediamine and three pyridines. For complexes based on propanediamine, the hierarchy determined is [L(5)Fe(II)-Cl](+) > [L(5)Fe(II)(OTf)](+) > [L(5)Fe(II)-(NCMe)](2+), and no ligand exchange could be evidenced for [L(5)Fe(II)-triazolyl](2+). Reactivity of the [L(5)Fe(II)-triazolyl](2+) complexes with hydrogen peroxide and PhIO is similar to the one of the parent complexes that lack this peculiar group, that is, generation of Fe(III)(OOH) and Fe(IV)(O), respectively. Accordingly, the ability of these complexes at catalyzing the oxidation of small organic molecules by these oxidants follows the tendencies of their previously reported counterparts. Noteworthy is the remarkable cyclooctene epoxidation activity by these complexes in the presence of PhIO.
- Published
- 2013
- Full Text
- View/download PDF
44. SERF-filtered experiments: new enantio-selective tools for deciphering complex spectra of racemic mixtures dissolved in chiral oriented media.
- Author
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Farjon J and Merlet D
- Subjects
- Models, Molecular, Molecular Conformation, Solvents chemistry, Stereoisomerism, Epoxy Compounds chemistry, Liquid Crystals chemistry, Nuclear Magnetic Resonance, Biomolecular methods
- Abstract
The use of chiral liquid crystals as NMR solvent is a powerful tool to visualize and quantify enantiomers. This technique is much more robust than traditional liquid state techniques. Recent developments have been performed to simplify proton spectra obtained in these solvents which are usually complex to analyze. In the different published sequences the enantiomeric differentiation can be visualized but none of them rely the different (1)H-(1)H couplings to have a coherent set for each enantiomer especially in cases of racemic mixtures. In this work to overcome such limitations, we present a new NMR pulse sequence using semi-selective pulses to assign for each enantiomer the different (1)H-(1)H couplings. The aim is to obtain the signal of only one enantiomer, through a first Selective ReFocussing (SERF) filtering block implemented for the enantio-selection followed by a second SERF block for measuring a chosen coupling. The whole sequence is called (1)H SERF-filtered-SERF. These techniques permit for the first time to assign all dipolar couplings to each enantiomer of racemic mixtures dissolved in chiral oriented media. We demonstrate that using this experiment it is possible to visualize enantio-differentiation even in the case where the multiplets are not resolved in the SERF experiments, pushing back the limits of the enantiomeric visualization., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
45. Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution.
- Author
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Farjon J, Boisbouvier J, Schanda P, Pardi A, Simorre JP, and Brutscher B
- Subjects
- HIV genetics, Hydrogen Bonding, Imino Sugars chemistry, Kinetics, Models, Molecular, Nucleic Acid Conformation, RNA, Transfer, Val chemistry, RNA, Viral chemistry, Solutions, Nuclear Magnetic Resonance, Biomolecular methods, RNA chemistry
- Abstract
Atomic-resolution information on the structure and dynamics of nucleic acids is essential for a better understanding of the mechanistic basis of many cellular processes. NMR spectroscopy is a powerful method for studying the structure and dynamics of nucleic acids; however, solution NMR studies are currently limited to relatively small nucleic acids at high concentrations. Thus, technological and methodological improvements that increase the experimental sensitivity and spectral resolution of NMR spectroscopy are required for studies of larger nucleic acids or protein-nucleic acid complexes. Here we introduce a series of imino-proton-detected NMR experiments that yield an over 2-fold increase in sensitivity compared to conventional pulse schemes. These methods can be applied to the detection of base pair interactions, RNA-ligand titration experiments, measurement of residual dipolar (15)N-(1)H couplings, and direct measurements of conformational transitions. These NMR experiments employ longitudinal spin relaxation enhancement techniques that have proven useful in protein NMR spectroscopy. The performance of these new experiments is demonstrated for a 10 kDa TAR-TAR*(GA) RNA kissing complex and a 26 kDa tRNA.
- Published
- 2009
- Full Text
- View/download PDF
46. Resolution enhancement in spectra of natural products dissolved in weakly orienting media with the help of 1H homonuclear dipolar decoupling during acquisition: application to 1H-13C dipolar couplings measurements.
- Author
-
Farjon J, Bermel W, and Griesinger C
- Subjects
- Anisotropy, Artifacts, Carbon Isotopes, Hydrogen, Methanol chemistry, Polyglutamic Acid chemistry, Protons, Sensitivity and Specificity, Solutions, Nuclear Magnetic Resonance, Biomolecular methods, Polyglutamic Acid analogs & derivatives
- Abstract
In weakly orienting media such as poly-gamma-benzyl-L-glutamate (PBLG) a polymer that forms a chiral liquid crystal in organic solvents, the spectral resolution for embedded molecules is usually poor because of numerous (1)H, (1)H dipolar couplings that generally broaden proton spectra. Therefore (1)H, (13)C dipolar couplings are difficult or impossible to measure. Here, we incorporate Flip-Flop decoupling during detection into an HSQC experiment. Flip-Flop removes the (1)H, (1)H dipolar couplings and scales the chemical shifts of the protons as well as the (1)H, (13)C dipolar couplings during detection. A resolution gain by a factor 1.5-4.2 and improved signal intensity by an average factor of 1.6-1.7 have been obtained. This technique is demonstrated on (+)-menthol dissolved in a PBLG/CDCl(3) phase.
- Published
- 2006
- Full Text
- View/download PDF
47. Effect of the solvent on the conformation of a depsipeptide: NMR-derived solution structure of hormaomycin in DMSO from residual dipolar couplings in a novel DMSO-compatible alignment medium.
- Author
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Reinscheid UM, Farjon J, Radzom M, Haberz P, Zeeck A, Blackledge M, and Griesinger C
- Subjects
- Bacterial Proteins metabolism, Depsipeptides metabolism, Models, Molecular, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Bacterial Proteins chemistry, Depsipeptides chemistry, Dimethyl Sulfoxide chemistry, Protein Conformation, Solvents chemistry
- Abstract
The macrocyclic compound hormaomycin has been investigated by NMR spectroscopy and by restrained molecular-dynamics simulations. Measurement of residual dipolar couplings induced by dissolving the depsipeptide in a polyacrylamide gel compatible with DMSO and their incorporation into the structure calculation of the title compound improved the precision of the family of structures. In DMSO the macrocyclic ring shows two beta-turns, whose positions in the sequence differ from those found in the CDCl3 solution structure and in the crystal structure obtained from hexylene glycol/H2O (50:50). The bulky side chain consisting of a 3-(2-nitrocyclopropyl)alanine and a chlorinated N-hydroxypyrrole moiety is flexible in DMSO.
- Published
- 2006
- Full Text
- View/download PDF
48. A DMSO-compatible orienting medium: towards the investigation of the stereochemistry of natural products.
- Author
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Haberz P, Farjon J, and Griesinger C
- Subjects
- Stereoisomerism, Biological Products chemistry, Dimethyl Sulfoxide chemistry
- Published
- 2005
- Full Text
- View/download PDF
49. Heteronuclear selective refocusing 2D NMR experiments for the spectral analysis of enantiomers in chiral oriented solvents.
- Author
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Farjon J, Baltaze JP, Lesot P, Merlet D, and Courtieu J
- Subjects
- Computer Simulation, Molecular Conformation, Propane analysis, Solutions, Solvents analysis, Stereoisomerism, Algorithms, Isomerism, Models, Chemical, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular methods, Propane analogs & derivatives, Propane chemistry, Solvents chemistry
- Abstract
We report the use of carbon-proton heteronuclear selective refocusing 2D NMR experiments dedicated to the spectral analysis of enantiomers dissolved in weakly ordering chiral liquid crystalline solvents. The method permits the extraction of carbon-proton residual dipolar couplings for each enantiomer from a complex or unresolved proton-coupled 13C spectral patterns. Illustrative examples are analysed and discussed. It is shown that an accurate determination of enantiomeric excess is possible., (Copyright 2004 John Wiley & Sons, Ltd.)
- Published
- 2004
- Full Text
- View/download PDF
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