10 results on '"Fangru Lian"'
Search Results
2. Programmed cell death ligand 1 pathologist training in the time of COVID-19: Our experience using a digital solution
- Author
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Dorothy Hayden, Joseph M Herndon, James C Campion, Janine D Feng, Fangru Lian, Jessica L Baumann, Bryan K Roland, and Ehab A ElGabry
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covid ,digital pathology ,programmed cell death ligand 1 ,training ,whole slide images ,diagnostic ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
The COVID-19 pandemic presented numerous challenges to the continuity of programmed cell death ligand 1 (PD-L1) assay training events conducted by our organization. Under typical conditions, these training events are face-to-face affairs, where participants are trained to assay algorithms on glass slides during multi-headed scope sessions. Social distancing measures undertaken to slow pandemic spread necessitated the adaptation of our training methods to facilitate assay training and subsequent continuation of clinical trials. The present report details the creation and use of the Roche pathology training portal (PTP) that allowed for remote training to diagnostic assay algorithms. The PTP is a web-based system comprised of a learning management system (LMS) coupled to an image management system (IMS). Whole slide images (WSIs) were produced using a DP200 instrument (Roche, Pleasanton, CA) and these scan files were then uploaded to an IMS. Courses were created on the LMS using annotated WSIs that were shared with enrolled pathologists worldwide during assay training events. These courses culminated in assay certification examinations, where pathologists evaluated test-case WSIs and evaluated these cases within the LMS. Trainee submissions were analyzed for pass/fail status by comparing user data entries with consensus scores on these test-case WSIs. To date, 47 pathologist trainings have occurred and of these, 44 have successfully passed the associated assay certification exam on the first attempt (93% 1st-try pass rate). The PTP allowed roche to continue training sites during the COVID-19 pandemic, and these early results demonstrate the capability of this digital solution regarding PD-L1 diagnostic assay training events.
- Published
- 2021
- Full Text
- View/download PDF
3. Subspecialty surgical pathologist′s performances as triage pathologists on a telepathology-enabled quality assurance surgical pathology service: A human factors study
- Author
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Beth L. Braunhut, Anna R. Graham, Fangru Lian, Phyllis D. Webster, Elizabeth A. Krupinski, Achyut K. Bhattacharyya, and Ronald S. Weinstein
- Subjects
Diagnostic accuracy, digital pathology, quality assurance, surgical pathology, telepathology, robotic telepathology ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Background: The case triage practice workflow model was used to manage incoming cases on a telepathology-enabled surgical pathology quality assurance (QA) service. Maximizing efficiency of workflow and the use of pathologist time requires detailed information on factors that influence telepathologists′ decision-making on a surgical pathology QA service, which was gathered and analyzed in this study. Materials and Methods: Surgical pathology report reviews and telepathology service logs were audited, for 1862 consecutive telepathology QA cases accrued from a single Arizona rural hospital over a 51 month period. Ten university faculty telepathologists served as the case readers. Each telepathologist had an area of subspecialty surgical pathology expertise (i.e. gastrointestinal pathology, dermatopathology, etc.) but functioned largely as a general surgical pathologist while on this telepathology-enabled QA service. They handled all incoming cases during their individual 1-h telepathology sessions, regardless of the nature of the organ systems represented in the real-time incoming stream of outside surgical pathology cases. Results: The 10 participating telepathologists′ postAmerican Board of pathology examination experience ranged from 3 to 36 years. This is a surrogate for age. About 91% of incoming cases were immediately signed out regardless of the subspecialty surgical pathologists′ area of surgical pathology expertise. One hundred and seventy cases (9.13%) were deferred. Case concurrence rates with the provisional surgical pathology diagnosis of the referring pathologist, for incoming cases, averaged 94.3%, but ranged from 88.46% to 100% for individual telepathologists. Telepathology case deferral rates, for second opinions or immunohistochemistry, ranged from 4.79% to 21.26%. Differences in concordance rates and deferral rates among telepathologists, for incoming cases, were significant but did not correlate with years of experience as a practicing pathologist. Coincidental overlaps of the area of subspecialty surgical pathology expertise with organ-related incoming cases did not influence decisions by the telepathologists to either defer those cases or to agree or disagree with the referring pathologist′s provisional diagnoses. Conclusions: Subspecialty surgical pathologists effectively served as general surgical pathologists on a telepathology-based surgical pathology QA service. Concurrence rates with incoming surgical pathology report diagnoses, and case deferral rates, varied significantly among the 10 on-service telepathologists. We found no evidence that the higher deferral rates correlated with improving the accuracy or quality of the surgical pathology reports.
- Published
- 2014
- Full Text
- View/download PDF
4. Immunohistochemical Detection of Synuclein Pathology in Skin in Idiopathic Rapid Eye Movement Sleep Behavior Disorder and Parkinsonism
- Author
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Kirsten I. Taylor, Tsu-Shuen Tsao, Mark D Robida, Hongjun Zhang, Wagner Zago, Mirko Ritter, Jeffrey Meridew, Christian Czech, Lidija Pestic-Dragovich, Marta Cañamero, Madison A Santana, Fangru Lian, Adriana Racolta, Sebastian Dziadek, Judith Pugh, Lei Tang, Anton Belousov, Thomas G. Beach, Rachel C Beck, Ronald B. Postuma, Thomas Kremer, and Ahmed Al-Qassabi
- Subjects
0301 basic medicine ,Lewy Body Disease ,Pathology ,medicine.medical_specialty ,Parkinson's disease ,Rapid eye movement sleep ,Autopsy ,REM Sleep Behavior Disorder ,Article ,03 medical and health sciences ,0302 clinical medicine ,Biopsy ,medicine ,Humans ,Pathological ,Skin ,medicine.diagnostic_test ,Lewy body ,business.industry ,Parkinsonism ,Parkinson Disease ,medicine.disease ,030104 developmental biology ,Neurology ,Skin biopsy ,alpha-Synuclein ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
Background Recent studies reported abnormal alpha-synuclein deposition in biopsy-accessible sites of the peripheral nervous system in Parkinson's disease (PD). This has considerable implications for clinical diagnosis. Moreover, if deposition occurs early, it may enable tissue diagnosis of prodromal PD. Objective The aim of this study was to develop and test an automated bright-field immunohistochemical assay of cutaneous pathological alpha-synuclein deposition in patients with idiopathic rapid eye movement sleep behavior disorder, PD, and atypical parkinsonism and in control subjects. Methods For assay development, postmortem skin biopsies were taken from 28 patients with autopsy-confirmed Lewy body disease and 23 control subjects. Biopsies were stained for pathological alpha-synuclein in automated stainers using a novel dual-immunohistochemical assay for serine 129-phosphorylated alpha-synuclein and pan-neuronal marker protein gene product 9.5. After validation, single 3-mm punch skin biopsies were taken from the cervical 8 paravertebral area from 79 subjects (28 idiopathic rapid eye movement sleep behavior disorder, 20 PD, 10 atypical parkinsonism, and 21 control subjects). Raters blinded to clinical diagnosis assessed the biopsies. Results The immunohistochemistry assay differentiated alpha-synuclein pathology from nonpathological-appearing alpha-synuclein using combined phosphatase and protease treatments. Among autopsy samples, 26 of 28 Lewy body samples and none of the 23 controls were positive. Among living subjects, punch biopsies were positive in 23 (82%) subjects with idiopathic rapid eye movement sleep behavior disorder, 14 (70%) subjects with PD, 2 (20%) subjects with atypical parkinsonism, and none (0%) of the control subjects. After a 3-year follow-up, eight idiopathic rapid eye movement sleep behavior disorder subjects phenoconverted to defined neurodegenerative syndromes, in accordance with baseline biopsy results. Conclusion Even with a single 3-mm punch biopsy, there is considerable promise for using pathological alpha-synuclein deposition in skin to diagnose both clinical and prodromal PD. © 2020 International Parkinson and Movement Disorder Society.
- Published
- 2020
5. Nrf2 Is Crucial to Graft Survival in a Rodent Model of Heart Transplantation
- Author
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Huihui Wang, Deyu Fang, Quan Qiu, Donna D. Zhang, Samantha A. Whitman, Fangru Lian, and Wei Wu
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Graft Rejection ,Aging ,Article Subject ,NF-E2-Related Factor 2 ,medicine.medical_treatment ,Spleen ,Inflammation ,Biochemistry ,digestive system ,environment and public health ,Mice ,Immune system ,Isothiocyanates ,medicine ,Animals ,Transplantation, Homologous ,RNA, Messenger ,lcsh:QH573-671 ,Heart transplantation ,Heart Failure ,Mice, Knockout ,Mice, Inbred BALB C ,CD11b Antigen ,biology ,business.industry ,lcsh:Cytology ,Macrophages ,Myocardium ,Graft Survival ,Interleukin-17 ,Cell Biology ,General Medicine ,respiratory system ,medicine.disease ,Transplantation ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Integrin alpha M ,Heart failure ,Sulfoxides ,Immunology ,biology.protein ,Heart Transplantation ,Interleukin 17 ,medicine.symptom ,business ,Immunosuppressive Agents ,Thiocyanates ,Research Article - Abstract
Currently, the sole treatment option for patients with heart failure is transplantation. The battle of prolonging graft survival and modulating innate and adaptive immune responses is still being waged in the clinic and in research labs. The transcription factor Nrf2 controls major cell survival pathways and is central to moderating inflammation and immune responses. In this study the effect of Nrf2 levels in host recipient C57BL/6 mice on Balb/c allogeneic graft survival was examined. Importantly, Nrf2−/−recipient mice could not support the graft for longer than 7.5 days on average, whereas activation of Nrf2 by sulforaphane in Nrf2+/+hosts prolonged graft survival to 13 days. Several immune cells in the spleen of recipient mice were unchanged; however, CD11b+macrophages were significantly increased in Nrf2−/−mice. In addition, IL-17 mRNA levels were elevated in grafts transplanted into Nrf2−/−mice. Although Nrf2 appears to play a crucial role in graft survival, the exact mechanism is yet to be fully understood.
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- 2013
- Full Text
- View/download PDF
6. Subspecialty surgical pathologist′s performances as triage pathologists on a telepathology-enabled quality assurance surgical pathology service: A human factors study
- Author
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Anna R. Graham, Ronald S. Weinstein, Beth L. Braunhut, Elizabeth A. Krupinski, Phyllis Webster, Achyut K. Bhattacharyya, and Fangru Lian
- Subjects
medicine.medical_specialty ,Pathology ,telepathology ,Health Informatics ,quality assurance ,Subspecialty ,lcsh:Computer applications to medicine. Medical informatics ,Diagnostic accuracy ,Pathology and Forensic Medicine ,Surgical pathology ,medicine ,lcsh:Pathology ,Referring Pathologist ,robotic telepathology ,business.industry ,General surgery ,Digital pathology ,Gastrointestinal pathology ,Triage ,Computer Science Applications ,lcsh:R858-859.7 ,Original Article ,Dermatopathology ,Diagnostic accuracy, digital pathology, quality assurance, surgical pathology, telepathology, robotic telepathology ,digital pathology ,Telepathology ,business ,surgical pathology ,lcsh:RB1-214 - Abstract
Background: The case triage practice workflow model was used to manage incoming cases on a telepathology-enabled surgical pathology quality assurance (QA) service. Maximizing efficiency of workflow and the use of pathologist time requires detailed information on factors that influence telepathologists’ decision-making on a surgical pathology QA service, which was gathered and analyzed in this study. Materials and Methods: Surgical pathology report reviews and telepathology service logs were audited, for 1862 consecutive telepathology QA cases accrued from a single Arizona rural hospital over a 51 month period. Ten university faculty telepathologists served as the case readers. Each telepathologist had an area of subspecialty surgical pathology expertise (i.e. gastrointestinal pathology, dermatopathology, etc.) but functioned largely as a general surgical pathologist while on this telepathology-enabled QA service. They handled all incoming cases during their individual 1-h telepathology sessions, regardless of the nature of the organ systems represented in the real-time incoming stream of outside surgical pathology cases. Results: The 10 participating telepathologists’ postAmerican Board of pathology examination experience ranged from 3 to 36 years. This is a surrogate for age. About 91% of incoming cases were immediately signed out regardless of the subspecialty surgical pathologists’ area of surgical pathology expertise. One hundred and seventy cases (9.13%) were deferred. Case concurrence rates with the provisional surgical pathology diagnosis of the referring pathologist, for incoming cases, averaged 94.3%, but ranged from 88.46% to 100% for individual telepathologists. Telepathology case deferral rates, for second opinions or immunohistochemistry, ranged from 4.79% to 21.26%. Differences in concordance rates and deferral rates among telepathologists, for incoming cases, were significant but did not correlate with years of experience as a practicing pathologist. Coincidental overlaps of the area of subspecialty surgical pathology expertise with organ-related incoming cases did not influence decisions by the telepathologists to either defer those cases or to agree or disagree with the referring pathologist's provisional diagnoses. Conclusions: Subspecialty surgical pathologists effectively served as general surgical pathologists on a telepathology-based surgical pathology QA service. Concurrence rates with incoming surgical pathology report diagnoses, and case deferral rates, varied significantly among the 10 on-service telepathologists. We found no evidence that the higher deferral rates correlated with improving the accuracy or quality of the surgical pathology reports.
- Published
- 2014
7. Quantitative histopathology identifies patients with thin melanomas who are at risk for metastases.
- Author
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Glazer, Evan S., Bartels, Peter H., Fangru Lian, Kha, Stephanie T., Morgan, Sherif S., da Silva, Vinicius D., Yozwiak, Michael L., Bartels, Hubert G., Cranmer, Lee D., de Oliveira, Jefferson K., Alberts, David S., Warneke, James A., and Krouse, Robert S.
- Published
- 2016
- Full Text
- View/download PDF
8. Loss of NHE8 expression impairs ocular surface function in mice.
- Author
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Hua Xu, Yang Zhao, Jing Li, Mingwu Wang, Fangru Lian, Minghong Gao, and Ghishan, Fayez K.
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EPITHELIAL cells ,GASTROINTESTINAL system ,GASTRIC mucosa ,WESTERN immunoblotting ,POLYMERASE chain reaction ,IMMUNOHISTOCHEMISTRY - Abstract
Sodium/hydrogen exchanger (NHE) 8 is expressed at the apical membrane of the epithelial cells and plays important roles in neutral sodium absorption in the gastrointestinal tract and the kidney. It also has an important role in epithelial mucosal protection in the gastric gland and the intestine. Although NHE8 has broad tissue distribution, the precise location and the physiological role of NHE8 in the eye remain unknown. In the present study, we successfully detected the expression of NHE8 in the ocular surface by PCR and Western blot in human and mouse eyes. Immunohistochemistry staining located NHE8 protein at the plasma membrane of the epithelial cells in the conjunctiva, the cornea, and the lacrimal gland both in human and mouse. We also detected the expression of downregulated-in-adenoma (DRA, a Cl--/HCO--transporter) in the ocular surface epithelial cells. Using NHE8--/-- mouse model, we found that loss of NHE8 function resulted in reduced tear production and increased corneal staining. These NHE8--/-- mice also showed increased expression of TNF-a and matrix metalloproteinase 9 (MMP9) genes. The expression of epithelial keratinization marker genes, small proline-rich protein 2h (Sprr2h) and transglutaminase 1 (Tgm1), were also increased in NHE8--/-- eyes. Furthermore, DRA expression in NHE8--/-- mice was reduced in the conjunctiva, the cornea, and the lacrimal glands in association with a reduction in conjunctival mucosal pH. Altered ocular surface function and reduced epithelial DRA expression in NHE8--/-- mice suggest that the role of NHE8 in ocular surface tissue involve in tear production and ocular epithelial protection. This study reveals a potential novel mechanism of dry eye condition involving abnormal NHE8 function. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
9. Tumor protein translationally controlled 1 is a p53 target gene that promotes cell survival.
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Weimin Chen, Huihui Wang, Shasha Tao, Yi Zheng, Wei Wu, Fangru Lian, Jaramillo, Melba, Deyu Fang, and Zhang, Donna D.
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- 2013
- Full Text
- View/download PDF
10. Anticoagulant Activities of a Monoclonal Antibody That Binds to Exocite II of Thrombin.
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Fangru Lian, Li He, Colwell, Niall S., Lollar, Pete, and Tollefsen, Douglas M.
- Subjects
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ANTICOAGULANTS , *MONOCLONAL antibodies , *THROMBIN - Abstract
Examines the anticoagulant activities of a monoclonal antibody binding to exocite II of thrombin. Isolation of immunoglobulin G (IgG) from patient with multiple myeloma; Delay of plasma clotting by IgG; Requirement of antithrombin for the prolongation of thrombin.
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- 2001
- Full Text
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