1. Structural and Functional Differences between KRIT1A and KRIT1B Isoforms: a Framework for Understanding CCM Pathogenesis
- Author
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Dario Livio Longo, Luca Goitre, Maria Avolio, Francesco Sgrò, Valeria Menchise, Lorenza Trabalzini, Elisa De Luca, Marco Marino, F Francalanci, P. Guazzi, Saverio Francesco Retta, and Fiorella Balzac
- Subjects
Models, Molecular ,Hemangioma, Cavernous, Central Nervous System ,head-to-tail protein interaction ,homology modeling ,CCM ,KRIT1 ,FERM domain ,Rap1A ,ICAP1 ,ligand docking ,yeast two-hybrid interaction ,nucleocytoplasmic shuttling ,Plasma protein binding ,Protein Structure, Secondary ,Mice ,Exon ,Protein structure ,Chlorocebus aethiops ,Protein Isoforms ,KRIT1 Protein ,Genetics ,Cerebral Cavernous Malformations (CCM) ,KRIT1A ,KRIT1B ,Microfilament Proteins ,Intracellular Signaling Peptides and Proteins ,rap1 GTP-Binding Proteins ,Cell biology ,COS Cells ,RNA splicing ,Microtubule-Associated Proteins ,Protein Binding ,Gene isoform ,Recombinant Fusion Proteins ,Biology ,Cell Line ,Proto-Oncogene Proteins ,Two-Hybrid System Techniques ,Animals ,Humans ,Point Mutation ,Computer Simulation ,Protein Interaction Domains and Motifs ,Homology modeling ,Central Nervous System Vascular Malformations ,Alternative splicing ,Cell Biology ,Peptide Fragments ,Rats ,CEREBRAL CAVERNOUS MALFORMATIONS ,FERM DOMAIN ,PROTEIN INTERACTIONS ,ENCODING KRIT1 ,NEUROFIBROMATOSIS TYPE-2 ,CRYSTAL-STRUCTURE ,HeLa Cells - Abstract
KRIT1 is a disease gene responsible for Cerebral Cavernous Malformations (CCM). It encodes for a protein containing distinct protein-protein interaction domains, including three NPXY/F motifs and a FERM domain. Previously, we isolated KRIT1B, an isoform characterized by the alternative splicing of the 15th coding exon and suspected to cause CCM when abnormally expressed. Combining homology modeling and docking methods of protein-structure and ligand binding prediction with the yeast two-hybrid assay of in vivo protein-protein interaction and cellular biology analyses we identified both structural and functional differences between KRIT1A and KRIT1B isoforms. We found that the 15th exon encodes for the distal beta-sheet of the F3/PTB-like subdomain of KRIT1A FERM domain, demonstrating that KRIT1B is devoid of a functional PTB binding pocket. As major functional consequence, KRIT1B is unable to bind Rap1A, while the FERM domain of KRIT1A is even sufficient for this function. Furthermore, we found that a functional PTB subdomain enables the nucleocytoplasmic shuttling of KRIT1A, while its alteration confers a restricted cytoplasmic localization and a dominant negative role to KRIT1B. Importantly, we also demonstrated that KRIT1A, but not KRIT1B, may adopt a closed conformation through an intramolecular interaction involving the third NPXY/F motif at the N-terminus and the PTB subdomain of the FERM domain, and proposed a mechanism whereby an open/closed conformation switch regulates KRIT1A nuclear translocation and interaction with Rap1A in a mutually exclusive manner. As most mutations found in CCM patients affect the KRIT1 FERM domain, the new insights into the structure-function relationship of this domain may constitute a useful framework for understanding molecular mechanisms underlying CCM pathogenesis.
- Published
- 2009
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