46 results on '"Elsea, S"'
Search Results
2. OP13.01: *Effective aspirin treatment for women at risk of pre‐eclampsia delays the metabolic clock of gestation.
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Hoang, L. Nguyen, Kovacevic, V., Tlaye, K., Milosavljevic, A., Elsea, S., Fernando, S., Syngelaki, A., Nicolaides, K., Wang, C., and Poon, L.C.
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FATTY acids ,OBSTETRICS ,DISCRIMINANT analysis ,GESTATIONAL age ,ASPIRIN - Abstract
This article, titled "Effective aspirin treatment for women at risk of pre-eclampsia delays the metabolic clock of gestation," examines the impact of low-dose aspirin on the metabolic gestational clock in high-risk women for pre-eclampsia. The study analyzed plasma samples from two trials, one with aspirin-treated women and the other with placebo-treated women. The results showed that aspirin significantly decreased the metabolic clock of gestation, suggesting that it delays the gestational age at delivery with pre-eclampsia. The findings provide support for the use of aspirin in high-risk pregnancies. [Extracted from the article]
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- 2024
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3. Aberrant hypermethylation of the major breakpoint cluster region in 17p11.2 in medulloblastomas but not supratentorial PNETS
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Frühwald, Michael C., O'Dorisio, M. S., Dai, Z., Rush, L. J., Krahe, R., Smiraglia, D. J., Pietsch, T., Elsea, S. H., and Plass, C.
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- 2020
4. A functional network module for Smith–Magenis syndrome
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Girirajan, S, Truong, H T, Blanchard, C L, and Elsea, S H
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- 2009
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5. 17p11.2p12 triplication and del(17)q11.2q12 in a severely affected child with dup(17)p11.2p12 syndrome
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Girirajan, S, Williams, S R, Garbern, J Y, Nowak, N, Hatchwell, E, and Elsea, S H
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- 2007
6. Gender, genotype, and phenotype differences in Smith–Magenis syndrome: a meta-analysis of 105 cases
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Edelman, E A, Girirajan, S, Finucane, B, Patel, P I, Lupski, J R, Smith, A CM, and Elsea, S H
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- 2007
7. RAI1 variations in Smith–Magenis syndrome patients without 17p11.2 deletions
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Girirajan, S, Elsas, L J, II, Devriendt, K, and Elsea, S H
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- 2005
8. Disruption of MBD5 contributes to a spectrum of psychopathology and neurodevelopmental abnormalities
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Mitchell, E, Skinner, S A, Lin, A E, Hanson, R R, Keelean-Fuller, D, Rogers, R C, Tapp, C, Zou, Y S, DuPont, B, Kearney, H M, Gusella, J F, Chaubey, A, Everman, D B, Talkowski, M E, Hanscom, C, Kirmani, S, Mullegama, S V, Hodge, J C, Pillalamarri, V, Tan, W H, Bartel, F, Powell, C M, Boyd, E, Elsea, S H, Toler, T L, and Morton, C C
- Abstract
Microdeletions of chromosomal region 2q23.1 that disrupt MBD5 contribute to a spectrum of neurodevelopmental phenotypes, however the impact of this locus in human psychopathology has not been described. To characterize the structural variation landscape of MBD5 disruptions and the associated psychopathology, 22 individuals with genomic disruption of MBD5 (translocation, point mutation, and deletion) were identified through whole-genome sequencing or cytogenomic microarray at 11 molecular diagnostic centers. The genomic impact ranged from a single base pair to 5.4 Mb. Parents were available for 11 cases, all of which confirmed the rearrangement arose de novo. Phenotypes were largely indistinguishable between patients with full-segment 2q23.1 deletions and those with intragenic MBD5 rearrangements, including alterations confined entirely to the 5′UTR, confirming the critical impact of non-coding sequence at this locus. We found heterogeneous, multi-system pathogenic effects of MBD5 disruption and characterized the associated spectrum of psychopathology, which includes sensory integration disorder, anxiety, self-hugging, bipolar disorder and others. Importantly, unique features of the oldest assessed patient were early-onset dementia and behavioral regression. Analyses also revealed phenotypes that distinguish MBD5 disruptions from seven well-established syndromes with significant diagnostic overlap. This study indicates that haploinsufficiency of MBD5 causes diverse phenotypes, yields insight into the spectrum of resulting neurodevelopmental and behavioral psychopathology, and provides clinical context for interpretation of MBD5 structural variations. Empirical evidence also suggests that disruption of non-coding MBD5 regulatory regions is sufficient for clinical manifestation, highlighting the limitations of exon-focused assessments. These results suggest an ongoing perturbation of neurological function throughout the lifespan, including risks for neurobehavioral regression and early-onset dementia.
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- 2014
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9. THU-008 - Rapid generation of somatic liver knockouts using multiplex CRISPR/Cas9 editing
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Bissig, K.-D., Moore, D., Marini, J.C., Elsea, S., Bissig, B., Legras, X., Pankowicz, F., Kim, K., Martins, C.S., Barzi, M., Wooton-Kee, R., and Lagor, W.
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- 2018
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10. Study to minimize hydrogen embrittlement of ultrahigh-strength steels
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Elsea, S. T, Fletcher, E. E, and Groeneveld, T. P
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Materials - Abstract
Hydrogen-stress cracking in high-strength steels is influenced by hydrogen content of the material and its hydrogen absorption tendency. Non-embrittling cleaning, pickling, and electroplating processes are being studied. Protection from this hydrogen embrittlement is important to the aerospace and aircraft industries.
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- 1967
11. Siblings of individuals with Smith-Magenis syndrome: an investigation of the correlates of positive and negative behavioural traits.
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Moshier, M. S., York, T. P., Silberg, J. L., and Elsea, S. H.
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BEHAVIOR disorders ,SIBLINGS ,DEVELOPMENTAL disabilities ,QUESTIONNAIRES ,WORLD Wide Web ,PILOT projects ,MULTIPLE regression analysis ,CROSS-sectional method ,DATA analysis software ,DISEASE complications ,DISEASE risk factors - Abstract
Background Smith-Magenis syndrome (SMS) is a neurodevelopmental disorder that affects approximately one out of 25 000 births worldwide. To date, no research has been conducted to investigate how having an individual with SMS in a family is a positive or negative influence on siblings. Methods To investigate this question we conducted a study involving 79 siblings and 60 parents of individuals with SMS to assess perceptions of how having a sibling with SMS positively and negative influence siblings' behavioural traits. Results Our findings show that age of siblings of individuals with SMS was associated with a significant increase in positive behavioural traits and a significant decrease in negative behavioural traits. Additionally, siblings who perceive benefits from having a sibling with SMS demonstrate significantly more positive behavioural traits and significantly fewer negative behavioural traits. Parents accurately assess the changes in sibling behavioural traits with age, and parents who perceive their child as having experienced benefits from the sibling relationship report that siblings demonstrate significantly more positive behavioural traits and significantly fewer negative behavioural traits. Conclusions Our research shows that although individuals experience difficulties as a result of having a sibling with SMS, overall, siblings tend to fare well and parents appreciate both the positive and negative behavioural effects that result from having a sibling with SMS. [ABSTRACT FROM AUTHOR]
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- 2012
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12. New developments in Smith-Magenis syndrome (del 17p11.2)
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Gropman AL, Elsea S, Duncan WC Jr., and Smith ACM
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- 2007
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13. Human genome meeting 2016
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Srivastava, A. K., Wang, Y., Huang, R., Skinner, C., Thompson, T., Pollard, L., Wood, T., Luo, F., Stevenson, R., Polimanti, R., Gelernter, J., Lin, X., Lim, I. Y., Wu, Y., Teh, A. L., Chen, L., Aris, I. M., Soh, S. E., Tint, M. T., MacIsaac, J. L., Yap, F., Kwek, K., Saw, S. M., Kobor, M. S., Meaney, M. J., Godfrey, K. M., Chong, Y. S., Holbrook, J. D., Lee, Y. S., Gluckman, P. D., Karnani, N., Kapoor, A., Lee, D., Chakravarti, A., Maercker, C., Graf, F., Boutros, M., Stamoulis, G., Santoni, F., Makrythanasis, P., Letourneau, A., Guipponi, M., Panousis, N., Garieri, M., Ribaux, P., Falconnet, E., Borel, C., Antonarakis, S. E., Kumar, S., Curran, J., Blangero, J., Chatterjee, S., Akiyama, J., Auer, D., Berrios, C., Pennacchio, L., Donti, T. R., Cappuccio, G., Miller, M., Atwal, P., Kennedy, A., Cardon, A., Bacino, C., Emrick, L., Hertecant, J., Baumer, F., Porter, B., Bainbridge, M., Bonnen, P., Graham, B., Sutton, R., Sun, Q., Elsea, S., Hu, Z., Wang, P., Zhu, Y., Zhao, J., Xiong, M., Bennett, David A., Hidalgo-Miranda, A., Romero-Cordoba, S., Rodriguez-Cuevas, S., Rebollar-Vega, R., Tagliabue, E., Iorio, M., D’Ippolito, E., Baroni, S., Kaczkowski, B., Tanaka, Y., Kawaji, H., Sandelin, A., Andersson, R., Itoh, M., Lassmann, T., Hayashizaki, Y., Carninci, P., Forrest, A. R. R., Semple, C. A., Rosenthal, E. A., Shirts, B., Amendola, L., Gallego, C., Horike-Pyne, M., Burt, A., Robertson, P., Beyers, P., Nefcy, C., Veenstra, D., Hisama, F., Bennett, R., Dorschner, M., Nickerson, D., Smith, J., Patterson, K., Crosslin, D., Nassir, R., Zubair, N., Harrison, T., Peters, U., Jarvik, G., Menghi, F., Inaki, K., Woo, X., Kumar, P., Grzeda, K., Malhotra, A., Kim, H., Ucar, D., Shreckengast, P., Karuturi, K., Keck, J., Chuang, J., Liu, E. T., Ji, B., Tyler, A., Ananda, G., Carter, G., Nikbakht, H., Montagne, M., Zeinieh, M., Harutyunyan, A., Mcconechy, M., Jabado, N., Lavigne, P., Majewski, J., Goldstein, J. B., Overman, M., Varadhachary, G., Shroff, R., Wolff, R., Javle, M., Futreal, A., Fogelman, D., Bravo, L., Fajardo, W., Gomez, H., Castaneda, C., Rolfo, C., Pinto, J. A., Akdemir, K. C., Chin, L., Patterson, S., Statz, C., Mockus, S., Nikolaev, S. N., Bonilla, X. I., Parmentier, L., King, B., Bezrukov, F., Kaya, G., Zoete, V., Seplyarskiy, V., Sharpe, H., McKee, T., Popadin, K., Basset-Seguin, N., Chaabene, R. Ben, Andrianova, M., Verdan, C., Grosdemange, K., Sumara, O., Eilers, M., Aifantis, I., Michielin, O., de Sauvage, F., Antonarakis, S., Likhitrattanapisal, S., Lincoln, S., Kurian, A., Desmond, A., Yang, S., Kobayashi, Y., Ford, J., Ellisen, L., Peters, T. L., Alvarez, K. R., Hollingsworth, E. F., Lopez-Terrada, D. H., Hastie, A., Dzakula, Z., Pang, A. W., Lam, E. T., Anantharaman, T., Saghbini, M., Cao, H., Gonzaga-Jauregui, C., Ma, L., King, A., Rosenzweig, E. Berman, Krishnan, U., Reid, J. G., Overton, J. D., Dewey, F., Chung, W. K., Small, K., DeLuca, A., Cremers, F., Lewis, R. A., Puech, V., Bakall, B., Silva-Garcia, R., Rohrschneider, K., Leys, M., Shaya, F. S., Stone, E., Sobreira, N. L., Schiettecatte, F., Ling, H., Pugh, E., Witmer, D., Hetrick, K., Zhang, P., Doheny, K., Valle, D., Hamosh, A., Jhangiani, S. N., Akdemir, Z. Coban, Bainbridge, M. N., Charng, W., Wiszniewski, W., Gambin, T., Karaca, E., Bayram, Y., Eldomery, M. K., Posey, J., Doddapaneni, H., Hu, J., Sutton, V. R., Muzny, D. M., Boerwinkle, E. A., Lupski, J. R., Gibbs, R. A., Shekar, S., Salerno, W., English, A., Mangubat, A., Bruestle, J., Thorogood, A., Knoppers, B. M., Takahashi, H., Nitta, K. R., Kozhuharova, A., Suzuki, A. M., Sharma, H., Cotella, D., Santoro, C., Zucchelli, S., Gustincich, S., Mulvihill, J. J., Baynam, G., Gahl, W., Groft, S. C., Kosaki, K., Lasko, P., Melegh, B., Taruscio, D., Ghosh, R., Plon, S., Scherer, S., Qin, X., Sanghvi, R., Walker, K., Chiang, T., Muzny, D., Wang, L., Black, J., Boerwinkle, E., Weinshilboum, R., Gibbs, R., Karpinets, T., Calderone, T., Wani, K., Yu, X., Creasy, C., Haymaker, C., Forget, M., Nanda, V., Roszik, J., Wargo, J., Haydu, L., Song, X., Lazar, A., Gershenwald, J., Davies, M., Bernatchez, C., Zhang, J., Woodman, S., Chesler, E. J., Reynolds, T., Bubier, J. A., Phillips, C., Langston, M. A., Baker, E. J., Lin, N., Amos, C., Calhoun, V., Dobretsberger, O., Egger, M., Leimgruber, F., Sadedin, S., Oshlack, A., Antonio, V. A. A., Ono, N., Ahmed, Z., Bolisetty, M., Zeeshan, S., Anguiano, E., Sarkar, A., Nandineni, M. R., Zeng, C., Shao, J., Liang, T., Pham, K., Chee-Wei, Y., Dongsheng, L., Lai-Ping, W., Lian, D., Hee, R. O. Twee, Yunus, Y., Aghakhanian, F., Mokhtar, S. S., Lok-Yung, C. V., Bhak, J., Phipps, M., Shuhua, X., Yik-Ying, T., Kumar, V., Boon-Peng, H., Campbell, I., Young, M. -A., James, P., Rain, M., Mohammad, G., Kukreti, R., Pasha, Q., Akilzhanova, A. R., Guelly, C., Abilova, Z., Rakhimova, S., Akhmetova, A., Kairov, U., Trajanoski, S., Zhumadilov, Z., Bekbossynova, M., Schumacher, C., Sandhu, S., Harkins, T., Makarov, V., Glenn, R., Momin, Z., Dilrukshi, B., Chao, H., Meng, Q., Gudenkauf, B., Kshitij, R., Jayaseelan, J., Nessner, C., Lee, S., Blankenberg, K., Lewis, L., Han, Y., Dinh, H., Jireh, S., Buhay, C., Liu, X., Wang, Q., Ding, Y., Veeraraghavan, N., Yang, Y., Beaudet, A. L., Eng, C. M., Worley, K. C. C., Liu, Y., Hughes, D. S. T., Murali, S. C., Harris, R. A., English, A. C., Hampton, O. A., Larsen, P., Beck, C., Wang, M., Kovar, C. L., Salerno, W. J., Yoder, A., Richards, S., Rogers, J., Raveenedran, M., Xue, C., Dahdouli, M., Cox, L., Fan, G., Ferguson, B., Hovarth, J., Johnson, Z., Kanthaswamy, S., Kubisch, M., Platt, M., Smith, D., Vallender, E., Wiseman, R., Below, J., Yu, F., Lin, J., Zhang, Y., Ouyang, Z., Moore, A., Wang, Z., Hofmann, J., Purdue, M., Stolzenberg-Solomon, R., Weinstein, S., Albanes, D., Liu, C. S., Cheng, W. L., Lin, T. T., Lan, Q., Rothman, N., Berndt, S., Chen, E. S., Bahrami, H., Khoshzaban, A., Keshal, S. Heidari, Alharbi, K. K. R., Zhalbinova, M., Akilzhanova, A., Bekbosynova, M., Myrzakhmetova, S., Matar, M., Mili, N., Molinari, R., Ma, Y., Guerrier, S., Elhawary, N., Tayeb, M., Bogari, N., Qotb, N., McClymont, S. A., Hook, P. W., Goff, L. A., McCallion, A., Kong, Y., Charette, J. R., Hicks, W. L., Naggert, J. K., Zhao, L., Nishina, P. M., Edrees, B. M., Athar, M., Al-Allaf, F. A., Taher, M. M., Khan, W., Bouazzaoui, A., Harbi, N. A., Safar, R., Al-Edressi, H., Anazi, A., Altayeb, N., Ahmed, M. A., Alansary, K., Abduljaleel, Z., Kratz, A., Beguin, P., Poulain, S., Kaneko, M., Takahiko, C., Matsunaga, A., Kato, S., Bertin, N., Vigot, R., Plessy, C., Launey, T., Graur, D., Friis-Nielsen, J., Izarzugaza, J. M., Brunak, S., Chakraborty, A., Basak, J., Mukhopadhyay, A., Soibam, B. S., Das, D., Biswas, N., Das, S., Sarkar, S., Maitra, A., Panda, C., Majumder, P., Morsy, H., Gaballah, A., Samir, M., Shamseya, M., Mahrous, H., Ghazal, A., Arafat, W., Hashish, M., Gruber, J. J., Jaeger, N., Snyder, M., Patel, K., Bowman, S., Davis, T., Kraushaar, D., Emerman, A., Russello, S., Henig, N., Hendrickson, C., Zhang, K., Rodriguez-Dorantes, M., Cruz-Hernandez, C. D., Garcia-Tobilla, C. D. P., Solorzano-Rosales, S., Jäger, N., Chen, J., Haile, R., Hitchins, M., Brooks, J. D., Jiménez-Morales, S., Ramírez, M., Nuñez, J., Bekker, V., Leal, Y., Jiménez, E., Medina, A., Hidalgo, A., Mejía, J., Halytskiy, V., Naggert, J., Collin, G. B., DeMauro, K., Hanusek, R., Belhassa, K., Belhassan, K., Bouguenouch, L., Samri, I., Sayel, H., moufid, FZ., El Bouchikhi, I., Trhanint, S., Hamdaoui, H., Elotmani, I., Khtiri, I., Kettani, O., Quibibo, L., Ahagoud, M., Abbassi, M., Ouldim, K., Marusin, A. V., Kornetov, A. N., Swarovskaya, M., Vagaiceva, K., Stepanov, V., De La Paz, E. M. Cutiongco, Sy, R., Nevado, J., Reganit, P., Santos, L., Magno, J. D., Punzalan, F. E., Ona, D., Llanes, E., Santos-Cortes, R. L., Tiongco, R., Aherrera, J., Abrahan, L., Pagauitan-Alan, P., Morelli, K. H., Domire, J. S., Pyne, N., Harper, S., Burgess, R., Gari, M. A., Dallol, A., Alsehli, H., Gari, A., Gari, M., Abuzenadah, A., Thomas, M., Sukhai, M., Garg, S., Misyura, M., Zhang, T., Schuh, A., Stockley, T., Kamel-Reid, S., Sherry, S., Xiao, C., Slotta, D., Rodarmer, K., Feolo, M., Kimelman, M., Godynskiy, G., O’Sullivan, C., Yaschenko, E., Rangel-Escareño, C., Rueda-Zarate, H., Tayubi, I. A., Mohammed, R., Ahmed, I., Ahmed, T., Seth, S., Amin, S., Mao, X., Sun, H., Verhaak, R. G., Whiite, S. J., Farek, J., Kahn, Z., Kasukawa, T., Lizio, M., Harshbarger, J., Hisashi, S., Severin, J., Imad, A., Sahin, S., Freeman, T. C., Baillie, K., Shekar, S. N., Salem, A. H., Ali, M., Ibrahim, A., Ibrahim, M., Barrera, H. A., Garza, L., Torres, J. A., Barajas, V., Ulloa-Aguirre, A., Kershenobich, D., Mortaji, Shahroj, Guizar, Pedro, Loera, Eliezer, Moreno, Karen, De León, Adriana, Monsiváis, Daniela, Gómez, Jackeline, Cardiel, Raquel, Fernandez-Lopez, J. C., Bonifaz-Peña, V., Contreras, A. V., Polfus, L., Wang, X., Philip, V., Abuzenadah, A. A., Turki, R., Uyar, A., Kaygun, A., Zaman, S., Marquez, E., George, J., Hendrickson, C. L., Starr, D. B., Baird, M., Kirkpatrick, B., Sheets, K., Nitsche, R., Prieto-Lafuente, L., Landrum, M., Lee, J., Rubinstein, W., Maglott, D., Thavanati, P. K. R., de Dios, A. Escoto, Hernandez, R. E. Navarro, Aldrate, M. E. Aguilar, Mejia, M. R. Ruiz, Kanala, K. R. R., Shahzad, N., Huber, E., Dan, A., Herr, W., Sprotte, G., Köstler, J., Hiergeist, A., Gessner, A., Andreesen, R., Holler, E., Al-Allaf, F., Alashwal, A., Taher, M., Abalkhail, H., Al-Allaf, A., Bamardadh, R., Filiptsova, O., Kobets, M., Kobets, Y., Burlaka, I., Timoshyna, I., Kobets, M. N., Al-allaf, F. A., Mohiuddin, M. T., Zainularifeen, A., Mohammed, A., and Owaidah, T.
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14. Assignment1 of β-centractin (CTRN2) to human chromosome 2 bands q11.1→q11.2 with somatic cell hybrids and in situ hybridization.
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Elsea, S. H., Clark, I. B., Juyal, R. C., Meyer, D. J., Meyer, D. I., and Patel, P. I.
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MICROFILAMENT proteins , *CYTOPLASM , *ACTOMYOSIN , *SOMATIC cells , *HUMAN chromosomes , *IN situ hybridization - Abstract
Centractins are a group of actin-related proteins that comprise the majority of the mass of the dynactin complex, a regulator of cytoplasmic dynein-mediated functions. Centractins are 50% identical to actin at the amino acid level. Centractins are highly conserved molecules and multiple isoforms of centractin are known to exist. The &b.alpha; and &b.beta; isoforms are expressed in a wide variety of similar tissues, but the &b.beta;-isoform is expressed at a much lower level than the &b.alpha; isoform.
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- 1999
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15. Broadcasters, receivers, functional groups of metabolites and the link to heart failure progression using polygenic factors.
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Yazdani A, Mendez-Giraldez R, Yazdani A, Schaid D, Won Kong S, Hadi M, Samiei A, Wittenbecher C, Lasky-Su J, Clish C, Marotta F, Kosorok M, Mora S, Muehlschlegel J, Chasman D, Larson M, and Elsea S
- Abstract
In a prospective study with records of heart failure (HF) incidence, we present metabolite profiling data from individuals without HF at baseline. We uncovered the interconnectivity of metabolites using data-driven and causal networks augmented with polygenic factors. Exploring the networks, we identified metabolite broadcasters, receivers, mediators, and subnetworks corresponding to functional classes of metabolites, and provided insights into the link between metabolomic architecture and regulation in health. We incorporated the network structure into the identification of metabolites associated with HF to control the effect of confounding metabolites. We identified metabolites associated with higher or lower risk of HF incidence, the associations that were not confounded by the other metabolites, such as glycine, ureidopropionic and glycocholic acids, and LPC 18:2. We revealed the underlying relationships of the findings. For example, asparagine directly influenced glycine, and both were inversely associated with HF. These two metabolites were influenced by polygenic factors and only essential amino acids which are not synthesized in the human body and come directly from the diet. Metabolites may play a critical role in linking genetic background and lifestyle factors to HF progression. Revealing the underlying connectivity of metabolites associated with HF strengthens the findings and facilitates a mechanistic understanding of HF progression.
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- 2023
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16. Wide range of phenotypic severity in individuals with late truncations unique to the predominant CDKL5 transcript in the brain.
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Keehan L, Haviland I, Gofin Y, Swanson LC, El Achkar CM, Schreiber J, VanNoy GE, O'Heir E, O'Donnell-Luria A, Lewis RA, Magoulas P, Tran A, Azamian MS, Chao HT, Pham L, Samaco RC, Elsea S, Thorpe E, Kesari A, Perry D, Lee B, Lalani SR, Rosenfeld JA, Olson HE, and Burrage LC
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- Male, Female, Humans, Phenotype, Brain, Protein Serine-Threonine Kinases genetics, Spasms, Infantile diagnosis, Spasms, Infantile genetics, Spasms, Infantile complications, Epileptic Syndromes genetics
- Abstract
Cyclin-dependent kinase-like 5 (CDKL5) deficiency disorder (CDD) is caused by heterozygous or hemizygous variants in CDKL5 and is characterized by refractory epilepsy, cognitive and motor impairments, and cerebral visual impairment. CDKL5 has multiple transcripts, of which the longest transcripts, NM_003159 and NM_001037343, have been used historically in clinical laboratory testing. However, the transcript NM_001323289 is the most highly expressed in brain and contains 170 nucleotides at the 3' end of its last exon that are noncoding in other transcripts. Two truncating variants in this region have been reported in association with a CDD phenotype. To clarify the significance and range of phenotypes associated with late truncating variants in this region of the predominant transcript in the brain, we report detailed information on two individuals, updated clinical information on a third individual, and a summary of published and unpublished individuals reported in ClinVar. The two new individuals (one male and one female) each had a relatively mild clinical presentation including periods of pharmaco-responsive epilepsy, independent walking and limited purposeful communication skills. A previously reported male continued to have a severe phenotype. Overall, variants in this region demonstrate a range of clinical severity consistent with reports in CDD but with the potential for milder presentation., (© 2022 Wiley Periodicals LLC.)
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- 2022
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17. Clinical metabolomics for inborn errors of metabolism.
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Ford L, Mitchell M, Wulff J, Evans A, Kennedy A, Elsea S, Wittmann B, and Toal D
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- Biomarkers metabolism, Humans, Metabolic Networks and Pathways, Metabolome, Metabolism, Inborn Errors genetics, Metabolomics methods
- Abstract
Metabolism is a highly regulated process that provides nutrients to cells and essential building blocks for the synthesis of protein, DNA and other macromolecules. In healthy biological systems, metabolism maintains a steady state in which the concentrations of metabolites are relatively constant yet are subject to metabolic demands and environmental stimuli. Rare genetic disorders, such as inborn errors of metabolism (IEM), cause defects in regulatory enzymes or proteins leading to metabolic pathway disruption and metabolite accumulation or deficiency. Traditionally, the laboratory diagnosis of IEMs has been limited to analytical methods that target specific metabolites such as amino acids and acyl carnitines. This approach is effective as a screening method for the most common IEM disorders but lacks the comprehensive coverage of metabolites that is necessary to identify rare disorders that present with nonspecific clinical symptoms. Fortunately, advancements in technology and data analytics has introduced a new field of study called metabolomics which has allowed scientists to perform comprehensive metabolite profiling of biological systems to provide insight into mechanism of action and gene function. Since metabolomics seeks to measure all small molecule metabolites in a biological specimen, it provides an innovative approach to evaluating disease in patients with rare genetic disorders. In this review we provide insight into the appropriate application of metabolomics in clinical settings. We discuss the advantages and limitations of the method and provide details related to the technology, data analytics and statistical modeling required for metabolomic profiling of patients with IEMs., (Copyright © 2022 Elsevier Inc. All rights reserved.)
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- 2022
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18. Cerebrospinal fluid metabolomics uniquely identifies pathways suggesting risk for anesthesia reactions during electroconvulsive therapy for bipolar disorder.
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Berner J and Elsea S
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- 2020
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19. Precision of a Clinical Metabolomics Profiling Platform for Use in the Identification of Inborn Errors of Metabolism.
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Ford L, Kennedy AD, Goodman KD, Pappan KL, Evans AM, Miller LAD, Wulff JE, Wiggs BR, Lennon JJ, Elsea S, and Toal DR
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- Adolescent, Biomarkers, Child, Child, Preschool, Chromatography, Liquid, Female, Humans, Infant, Infant, Newborn, Male, Metabolic Networks and Pathways, Metabolism, Inborn Errors etiology, Reproducibility of Results, Tandem Mass Spectrometry, Young Adult, Metabolism, Inborn Errors blood, Metabolism, Inborn Errors diagnosis, Metabolome, Metabolomics methods, Metabolomics standards
- Abstract
Background: The application of whole-exome sequencing for the diagnosis of genetic disease has paved the way for systems-based approaches in the clinical laboratory. Here, we describe a clinical metabolomics method for the screening of metabolic diseases through the analysis of a multi-pronged mass spectrometry platform. By simultaneously measuring hundreds of metabolites in a single sample, clinical metabolomics offers a comprehensive approach to identify metabolic perturbations across multiple biochemical pathways., Methods: We conducted a single- and multi-day precision study on hundreds of metabolites in human plasma on 4, multi-arm, high-throughput metabolomics platforms., Results: The average laboratory coefficient of variation (CV) on the 4 platforms was between 9.3 and 11.5% (median, 6.5-8.4%), average inter-assay CV on the 4 platforms ranged from 9.9 to 12.6% (median, 7.0-8.3%) and average intra-assay CV on the 4 platforms ranged from 5.7 to 6.9% (median, 3.5-4.4%). In relation to patient sample testing, the precision of multiple biomarkers associated with IEM disorders showed CVs that ranged from 0.2 to 11.0% across 4 analytical batches., Conclusions: This evaluation describes single and multi-day precision across 4 identical metabolomics platforms, comprised each of 4 independent method arms, and reproducibility of the method for the measurement of key IEM metabolites in patient samples across multiple analytical batches, providing evidence that the method is robust and reproducible for the screening of patients with inborn errors of metabolism., (© American Association for Clinical Chemistry 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2020
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20. Simultaneous determination of plasma total homocysteine and methionine by liquid chromatography-tandem mass spectrometry.
- Author
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Jiang Y, Mistretta B, Elsea S, and Sun Q
- Subjects
- Humans, Limit of Detection, Linear Models, Reproducibility of Results, Time Factors, Blood Chemical Analysis methods, Chromatography, Liquid methods, Homocysteine blood, Methionine blood, Tandem Mass Spectrometry methods
- Abstract
The sulfur-containing amino acid homocysteine is a cardiac risk factor and a biomarker for several inborn errors of metabolism in methionine synthesis. A simple LC-MS/MS method was developed and validated for determination of homocysteine and methionine in human plasma. Rapid separation was achieved using a reverse phase liquid chromatography. Mass spectrometry identification was performed in positive electrospray ionization mode for homocysteine and methionine. Accuracy, precision, linearity, recovery and sample stability were evaluated in the method validation. The test is applied in diagnosis of homocystinuria and monitoring total homocysteine levels. Moreover, simultaneous measurement of methionine helps in the differentiation of homocystinuria and some cobalamin disorders (such as cblC and cblD defects) without additional amino acid testing. Lastly, this assay is sensitive to detect reduced total homocysteine levels that are possibly seen in sulfocysteinuria and molybdenum cofactor deficiencies., (Copyright © 2016. Published by Elsevier B.V.)
- Published
- 2017
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21. A duplication CNV that conveys traits reciprocal to metabolic syndrome and protects against diet-induced obesity in mice and men.
- Author
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Lacaria M, Saha P, Potocki L, Bi W, Yan J, Girirajan S, Burns B, Elsea S, Walz K, Chan L, Lupski JR, and Gu W
- Subjects
- Abnormalities, Multiple, Animals, Body Weight, Chromosome Deletion, Chromosome Disorders, Chromosome Duplication, Diet, High-Fat, Disease Models, Animal, Haploinsufficiency, Humans, Mice, Mice, Inbred C57BL, Mice, Transgenic, Trans-Activators genetics, DNA Copy Number Variations genetics, Obesity genetics, Obesity metabolism, Obesity pathology, Smith-Magenis Syndrome genetics, Smith-Magenis Syndrome metabolism, Trans-Activators metabolism
- Abstract
The functional contribution of CNV to human biology and disease pathophysiology has undergone limited exploration. Recent observations in humans indicate a tentative link between CNV and weight regulation. Smith-Magenis syndrome (SMS), manifesting obesity and hypercholesterolemia, results from a deletion CNV at 17p11.2, but is sometimes due to haploinsufficiency of a single gene, RAI1. The reciprocal duplication in 17p11.2 causes Potocki-Lupski syndrome (PTLS). We previously constructed mouse strains with a deletion, Df(11)17, or duplication, Dp(11)17, of the mouse genomic interval syntenic to the SMS/PTLS region. We demonstrate that Dp(11)17 is obesity-opposing; it conveys a highly penetrant, strain-independent phenotype of reduced weight, leaner body composition, lower TC/LDL, and increased insulin sensitivity that is not due to alteration in food intake or activity level. When fed with a high-fat diet, Dp(11)17/+ mice display much less weight gain and metabolic change than WT mice, demonstrating that the Dp(11)17 CNV protects against metabolic syndrome. Reciprocally, Df(11)17/+ mice with the deletion CNV have increased weight, higher fat content, decreased HDL, and reduced insulin sensitivity, manifesting a bona fide metabolic syndrome. These observations in the deficiency animal model are supported by human data from 76 SMS subjects. Further, studies on knockout/transgenic mice showed that the metabolic consequences of Dp(11)17 and Df(11)17 CNVs are not only due to dosage alterations of Rai1, the predominant dosage-sensitive gene for SMS and likely also PTLS. Our experiments in chromosome-engineered mouse CNV models for human genomic disorders demonstrate that a CNV can be causative for weight/metabolic phenotypes. Furthermore, we explored the biology underlying the contribution of CNV to the physiology of weight control and energy metabolism. The high penetrance, strain independence, and resistance to dietary influences associated with the CNVs in this study are features distinct from most SNP-associated metabolic traits and further highlight the potential importance of CNV in the etiology of both obesity and MetS as well as in the protection from these traits., Competing Interests: JRL is a consultant for Athena Diagnostics, holds stock ownership in 23andMe and Ion Torrent Systems, and is a co-inventor on multiple United States and European patents for DNA diagnostics.
- Published
- 2012
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22. Genomic organisation of the approximately 1.5 Mb Smith-Magenis syndrome critical interval: transcription map, genomic contig, and candidate gene analysis.
- Author
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Lucas RE, Vlangos CN, Das P, Patel PI, and Elsea SH
- Subjects
- Chromosome Aberrations, Cloning, Molecular, Expressed Sequence Tags, Facies, Humans, Molecular Sequence Data, Sequence Analysis, DNA, Syndrome, Abnormalities, Multiple genetics, Chromosome Mapping, Chromosomes, Human, Pair 17 genetics, Gene Deletion, Genome, Human, Intellectual Disability genetics
- Abstract
Smith-Magenis syndrome (SMS) is a multiple congenital anomalies/mental retardation syndrome associated with an interstitial deletion of chromosome 17 involving band p11.2. SMS is hypothesised to be a contiguous gene syndrome in which the phenotype arises from the haploinsufficiency of multiple, functionally-unrelated genes in close physical proximity, although the true molecular basis of SMS is not yet known. In this study, we have generated the first overlapping and contiguous transcription map of the SMS critical interval, linking the proximal 17p11.2 region near the SMS-REPM and the distal region near D17S740 in a minimum tiling path of 16 BACs and two PACs. Additional clones provide greater coverage throughout the critical region. Not including the repetitive sequences that flank the critical interval, the map is comprised of 13 known genes, 14 ESTs, and six genomic markers, and is a synthesis of Southern hybridisation and polymerase chain reaction data from gene and marker localisation to BACs and PACs and database sequence analysis from the human genome project high-throughput draft sequence. In order to identify possible candidate genes, we performed sequence analysis and determined the tissue expression pattern analysis of 10 novel ESTs that are deleted in all SMS patients. We also present a detailed review of six promising candidate genes that map to the SMS critical region.
- Published
- 2001
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23. Aberrant hypermethylation of the major breakpoint cluster region in 17p11.2 in medulloblastomas but not supratentorial PNETs.
- Author
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Frühwald MC, O'Dorisio MS, Dai Z, Rush LJ, Krahe R, Smiraglia DJ, Pietsch T, Elsea SH, and Plass C
- Subjects
- Adolescent, Adult, Child, Child, Preschool, Chromosome Deletion, CpG Islands genetics, Female, Humans, Infant, Newborn, Male, Transcriptional Activation genetics, Translocation, Genetic, Cerebellar Neoplasms genetics, Chromosome Breakage genetics, Chromosomes, Human, Pair 17 genetics, DNA Methylation, Medulloblastoma genetics, Neuroectodermal Tumors, Primitive genetics, Supratentorial Neoplasms genetics
- Abstract
Deletions of 17p have been consistently reported in up to 50% of medulloblastomas (MBs), and the major breakpoint interval has been localized to chromosome segment 17p11.2. Based on several reports linking aberrant DNA methylation and chromosomal disruption, we examined the methylation pattern in this region by employing restriction landmark genomic scanning (RLGS). Several CpG islands located in the major breakpoint cluster region were identified using a bacterial artificial chromosome (BAC) contig of the breakpoint region. A long-range methylation map was established for 20 MBs and 5 supratentorial primitive neuroectodermal tumors (stPNETs). Selected CpG islands were examined using Southern and bisulfite sequencing analysis. Aberrantly hypermethylated CpG islands in 17p11. 2 were found in 33% of MBs. Interestingly, one CpG island was methylated in MBs, but not in any of the examined stPNETs. A BAC clone covering three of the methylated CpG islands was partially sequenced in the search for a potential tumor suppressor gene. None of the expressed sequence tag sequences and full-length mouse/human cDNAs that were associated with aberrant methylation showed a change in expression levels due to methylation. The potential link between chromosomal instability in 17p11.2 and hypermethylation in this region is discussed.
- Published
- 2001
24. HFE polymorphism and accurate diagnosis of C282Y hereditary hemochromatosis carriers.
- Author
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Elsea SH and Leykam V
- Subjects
- Hemochromatosis Protein, Humans, Genetic Carrier Screening, HLA Antigens genetics, Hemochromatosis genetics, Histocompatibility Antigens Class I genetics, Membrane Proteins, Polymorphism, Genetic
- Published
- 2000
25. Assignment of developmentally regulated GTP-binding protein (DRG2) to human chromosome band 17p11.2 with somatic cell hybrids and localization to the Smith-Magenis syndrome critical interval.
- Author
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Vlangos CN, Das P, Patel PI, and Elsea SH
- Subjects
- Blotting, Southern, Chromosome Mapping, Expressed Sequence Tags, Fetus metabolism, Gene Expression Profiling, Humans, Hybrid Cells, Polymerase Chain Reaction, RNA, Messenger analysis, RNA, Messenger genetics, Sequence Tagged Sites, Syndrome, Abnormalities, Multiple genetics, Chromosome Deletion, Chromosomes, Human, Pair 17 genetics, GTP-Binding Proteins genetics, Genetic Linkage genetics, Intellectual Disability genetics
- Published
- 2000
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26. Hemizygosity for the COP9 signalosome subunit gene, SGN3, in the Smith-Magenis syndrome.
- Author
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Elsea SH, Mykytyn K, Ferrell K, Coulter KL, Das P, Dubiel W, Patel PI, and Metherall JE
- Subjects
- Animals, Blotting, Western, CHO Cells, COP9 Signalosome Complex, Cells, Cultured, Chromosome Deletion, Chromosome Mapping, Cricetinae, DNA analysis, DNA genetics, Female, Gene Deletion, Gene Expression Regulation, Humans, Hybrid Cells, Luciferases genetics, Luciferases metabolism, Lymphocytes cytology, Lymphocytes metabolism, Male, NF-kappa B genetics, NF-kappa B metabolism, Nuclear Proteins, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Syndrome, Abnormalities, Multiple genetics, Chromosomes, Human, Pair 17 genetics, Intellectual Disability genetics, Protein Kinases genetics
- Abstract
Smith-Magenis syndrome (SMS) is a multiple congenital anomaly/mental retardation syndrome associated with an interstitial deletion of chromosome band 17p11.2. The critical region is extremely gene-rich and spans approximately 1.5-2.0 Mb of DNA. Here we report the localization and partial characterization of the gene for subunit 3 of the COP9 signalosome, SGN3. SGN3 maps to the distal portion of the SMS critical interval, between SREBF1 and cCI17-638. We assessed the potential effect of haploinsufficiency of SGN3 in SMS patient lymphoblastoid cell lines through transfection studies and western analysis. Our results indicate that the COP9 signalosome assembles properly in these cells and appears to have normal expression and a kinase function intact. However, because the role of the COP9 signalosome in embryogenesis or differentiation is still uncertain, we cannot rule out the involvement of this gene in the Smith-Magenis syndrome., (Copyright 1999 Wiley-Liss, Inc.)
- Published
- 1999
27. Human 12(R)-lipoxygenase and the mouse ortholog. Molecular cloning, expression, and gene chromosomal assignment.
- Author
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Sun D, McDonnell M, Chen XS, Lakkis MM, Li H, Isaacs SN, Elsea SH, Patel PI, and Funk CD
- Subjects
- 12-Hydroxy-5,8,10,14-eicosatetraenoic Acid biosynthesis, Animals, Arachidonate 12-Lipoxygenase metabolism, Base Sequence, Cloning, Molecular, DNA, Complementary, Humans, Mice, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Arachidonate 12-Lipoxygenase genetics, Chromosome Mapping, Chromosomes, Human, Pair 17
- Abstract
Expressed sequence tag information was used to clone the full-length sequence for a new human lipoxygenase from the B cell line CCL-156. A related mouse sequence with 83% nucleotide identity to the human sequence was also cloned. The human lipoxygenase, when expressed via the baculovirus/insect cell system produced an approximately 80-kDa protein capable of metabolizing arachidonic acid to a product identified as 12-hydroxyeicosatetraenoic acid by mass spectrometry. Using chiral phase-high performance liquid chromatography, the product was identified as >98% 12(R)-hydroxyeicosatetraenoic acid as opposed to the S-stereoisomer formed by all other known mammalian lipoxygenases. The single copy human 12(R)-lipoxygenase gene was localized to the chromosome 17p13 region, the locus where most other lipoxygenase genes are known to reside. By reverse transcription-polymerase chain reaction, but not by Northern blot, analysis the 12(R)-lipoxygenase mRNA was detected in B cells and adult skin. However, the related mouse lipoxygenase mRNA was highly expressed in epidermis of newborn mice and to a lesser extent in adult brain cortex. By in situ hybridization the mouse lipoxygenase gene was demonstrated to be temporally and spatially regulated during embryogenesis. Expression was induced at embryonic day 15.5 in epidermis, nasal epithelium, and surface of the tongue. These results broaden the mammalian lipoxygenase family to include a 12(R)-lipoxygenase whose biological function remains to be determined.
- Published
- 1998
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28. Gene for topoisomerase III maps within the Smith-Magenis syndrome critical region: analysis of cell-cycle distribution and radiation sensitivity.
- Author
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Elsea SH, Fritz E, Schoener-Scott R, Meyn MS, and Patel PI
- Subjects
- Abnormalities, Multiple enzymology, Cells, Cultured, Chromosome Deletion, Chromosomes, Human, Pair 17 ultrastructure, Haplotypes, Humans, Intellectual Disability enzymology, Syndrome, Abnormalities, Multiple genetics, Cell Cycle genetics, Cell Cycle radiation effects, DNA Topoisomerases, Type I genetics, Intellectual Disability genetics, Radiation Tolerance genetics, Restriction Mapping
- Abstract
Smith-Magenis syndrome (SMS) is caused by an interstitial deletion of chromosome band 17p11.2 averaging 4-5 Mb. This deletion is likely to contain a large number of genes, each of which could potentially contribute toward the clinical phenotype. We report that the gene for topoisomerase III (hTOP3) is commonly deleted in SMS patients and maps between D17S447 and D17S258 on the short arm of chromosome 17. Cellular studies of SMS patient lymphoblasts and their respective parental cell lines were undertaken to determine the consequences of haploinsufficiency of hTOP3. Our studies indicate that hemizygosity for hTOP3 does not appreciably affect cell-cycle kinetics or activation of ionizing radiation-sensitive cell-cycle checkpoints. Furthermore, the induction of apoptosis in response to ionizing radiation in SMS and parental cells was similar. Our studies suggest that haploinsufficiency of hTOP3 does not have a major impact on the behavior of cells from SMS patients and may not play a significant role in the SMS phenotype.
- Published
- 1998
29. Cloning of a human "epidermal-type" 12-lipoxygenase-related gene and chromosomal localization to 17p13.
- Author
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Sun D, Elsea SH, Patel PI, and Funk CD
- Subjects
- Amino Acid Sequence, Base Sequence, Chromosome Mapping, Cloning, Molecular, DNA, Complementary genetics, Epidermis chemistry, Exons genetics, Humans, Introns genetics, Molecular Sequence Data, Sequence Analysis, DNA, Arachidonate 12-Lipoxygenase genetics, Chromosomes, Human, Pair 17 genetics, Epidermis enzymology, Pseudogenes genetics
- Abstract
A human "epidermal-type" 12-lipoxygenase (e-12LO) pseudogene was cloned using a murine e-12LO cDNA probe. Similar to other lipoxygenase genes, the genomic sequence revealed 14 exons and 13 introns covering 6.7 kb of DNA. cDNA corresponding to this gene was amplified from RNA of human skin and hair follicles by RACE-PCR and displayed 65-80% identity to the three murine 12-lipoxygenase cDNAs. Based on several criteria, humans appear to lack a functional e-12LO gene but instead have acquired an expressed pseudogene. The pseudogene designated ALOX12P2 was localized to chromosome 17p13 by analysis of somatic hybrid DNA panels.
- Published
- 1998
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30. Overexpression of a truncated human topoisomerase III partially corrects multiple aspects of the ataxia-telangiectasia phenotype.
- Author
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Fritz E, Elsea SH, Patel PI, and Meyn MS
- Subjects
- Apoptosis, Cells, Cultured, DNA Topoisomerases, Type I biosynthesis, Dose-Response Relationship, Radiation, Fibroblasts cytology, Humans, Open Reading Frames, Phenotype, Recombinant Proteins biosynthesis, Sequence Analysis, DNA, Sequence Deletion, X-Rays, Ataxia Telangiectasia genetics, DNA Topoisomerases, Type I genetics, Suppression, Genetic
- Abstract
Ataxia-telangiectasia (A-T) is a recessive human disease characterized by radiation sensitivity, genetic instability, immunodeficiency, and high cancer risk. We previously used expression cloning to identify CAT4.5, a human cDNA that partially suppresses multiple aspects of the A-T phenotype upon transfection into cultured cells. Sequencing CAT4.5 revealed a 1.1-kb intronic fragment followed by a related ORF of 2.5 kb that encodes the near full-length ORF for hTOP3, the first mammalian topoisomerase III to be identified. Endogenous expression of hTOP3 was found in all human tissues tested. Both pCAT4.5 and an antisense hTOP3 construct were able to inhibit spontaneous and radiation-induced apoptosis in A-T fibroblasts, whereas overexpression of a full-length hTOP3 cDNA did not. We postulate that topoisomerase III may be deregulated in A-T cells and that CAT4.5 complements the A-T phenotype via a dominant-negative mechanism. Furthermore, functional correction of hyper-recombination in A-T cells by CAT4.5 supports the hypothesis that the hTOP3 topoisomerase is involved in the control of genomic stability, perhaps in concert with the Bloom or Werner syndrome DNA helicases.
- Published
- 1997
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31. Quinolones share a common interaction domain on topoisomerase II with other DNA cleavage-enhancing antineoplastic drugs.
- Author
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Elsea SH, Westergaard M, Burden DA, Lomenick JP, and Osheroff N
- Subjects
- Amsacrine metabolism, Amsacrine pharmacology, Animals, Antineoplastic Agents pharmacology, Binding Sites, CHO Cells, Ciprofloxacin metabolism, Ciprofloxacin pharmacology, Cricetinae, Drosophila melanogaster, Electrophoresis, Agar Gel, Enzyme Activation, Etoposide metabolism, Etoposide pharmacology, Genistein, Isoflavones metabolism, Isoflavones pharmacology, Kinetics, Molecular Structure, Quinolones pharmacology, Anti-Infective Agents, Antineoplastic Agents metabolism, DNA Topoisomerases, Type II chemistry, DNA Topoisomerases, Type II metabolism, DNA, Superhelical metabolism, Fluoroquinolones, Quinolones metabolism
- Abstract
Topoisomerase II is the cytotoxic target for a number of clinically relevant antineoplastic drugs. Despite the fact that these agents differ significantly in structure, a previous study [Corbett, A. H., Hong, D., & Osheroff, N. (1993) J. Biol. Chem. 268, 14394-14398] indicated that the site of action for etoposide on topoisomerase II overlaps those of other DNA cleavage-enhancing drugs. Therefore, to further define interactions between drugs and the enzyme, the functional interaction domain (i.e., interaction domain defined by drug function) for quinolones on Drosophila topoisomerase II was mapped with respect to several classes of antineoplastic agents. This was accomplished by characterizing the effects of ciprofloxacin (a gyrase-targeted antibacterial quinolone) on the ability of etoposide, amsacrine, genistein, and the antineoplastic quinolone, CP-115,953, to enhance topoisomerase II-mediated DNA cleavage. Although ciprofloxacin interacts with the eukaryotic type II enzyme, it shows little ability to stimulate DNA cleavage. Ciprofloxacin attenuated cleavage enhancement by all of the above drugs. Similar results were obtained using a related quinolone, CP-80,080, as a competitor. In addition, kinetic analysis of DNA cleavage indicated that ciprofloxacin is a competitive inhibitor of CP-115,953 and etoposide. Finally, ciprofloxacin inhibited the cytotoxic actions of CP-115,953 and etoposide in mammalian cells to an extent that paralleled its in vitro attenuation of cleavage. These results strongly suggest that several structurally disparate DNA cleavage-enhancing antineoplastic drugs share an overlapping site of action on topoisomerase II. Based on the results of drug competition and mutagenesis studies, a model for the drug interaction domain on topoisomerase II is described.
- Published
- 1997
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32. Definition of the critical interval for Smith-Magenis syndrome.
- Author
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Elsea SH, Purandare SM, Adell RA, Juyal RC, Davis JG, Finucane B, Magenis RE, and Patel PI
- Subjects
- Adolescent, Child, Preschool, Genetic Markers, Humans, Hybrid Cells, Syndrome, Abnormalities, Multiple genetics, Chromosome Deletion, Chromosomes, Human, Pair 17
- Abstract
Smith-Magenis syndrome (SMS) comprises a complex physical and behavioral phenotype that is associated with an interstitial deletion of chromosome 17p11.2. The deletions observed in patients can range from <2 to >9 megabases of DNA and may include more than 100 genes. In order to determine the critical deletion interval responsible for the syndrome phenotype, we have examined several patients with varying deletions involving 17p11.2 by somatic cell hybrid analyses. We have binned 112 markers along 17p11.2, including 27 markers within the critical interval for SMS, which is bound proximally by D17S29 and distally by cCI17-638. In addition, we present two patients who carry deletions involving 17p11.2 but do not exhibit the typical features of SMS. Patients such as these will allow genotype:phenotype correlations to be made and the gene(s) responsible for the SMS phenotype to be determined.
- Published
- 1997
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33. Molecular analyses of 17p11.2 deletions in 62 Smith-Magenis syndrome patients.
- Author
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Juyal RC, Figuera LE, Hauge X, Elsea SH, Lupski JR, Greenberg F, Baldini A, and Patel PI
- Subjects
- Chromosome Banding, Chromosome Mapping, Female, Gene Deletion, Humans, In Situ Hybridization, Fluorescence, Male, Syndrome, Abnormalities, Multiple genetics, Chromosomes, Human, Pair 17, Intellectual Disability genetics
- Abstract
Smith-Magenis syndrome (SMS) is a clinically recognizable, multiple congenital anomalies/mental retardation syndrome caused by an interstitial deletion involving band p11.2 of chromosome 17. Toward the molecular definition of the interval defining this microdeletion syndrome, 62 unrelated SMS patients in conjunction with 70 available unaffected parents were molecularly analyzed with respect to the presence or absence of 14 loci in the proximal region of the short arm of chromosome 17. A multifaceted approach was used to determine deletion status at the various loci that combined (i) FISH analysis, (ii)PCR and Southern analysis of somatic cell hybrids retaining the deleted chromosome 17 from selected patients, and (iii) genotype determination of patients for whom a parent(s) was available at four microsatellite marker loci and at four loci with associated RFLPs. The relative order of two novel anonymous markers and a new microsatellite marker was determined in 17p11.2. The results confirmed that the proximal deletion breakpoint in the majority of SMS patients is located between markers D17S58 (EW301) and D17S446 (FG1) within the 17p11.1-17p11.2 region. The common distal breakpoint was mapped between markers cCI17-638, which lies distal to D17S71, and cCI17-498, which lies proximal to the Charcot Marie-Tooth disease type 1A locus. The locus D17S258 was found to be deleted in all 62 patients, and probes from this region can be used for diagnosis of the SMS deletion by FISH. Ten patients demonstrated molecularly distinct deletions; of these, two patients had smaller deletions and will enable the definition of the critical interval for SMS.
- Published
- 1996
34. Haploinsufficiency of cytosolic serine hydroxymethyltransferase in the Smith-Magenis syndrome.
- Author
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Elsea SH, Juyal RC, Jiralerspong S, Finucane BM, Pandolfo M, Greenberg F, Baldini A, Stover P, and Patel PI
- Subjects
- Base Sequence, Chromosome Mapping, Chromosomes, Human, Pair 17 genetics, Gene Deletion, Glycine Hydroxymethyltransferase blood, Glycine Hydroxymethyltransferase urine, Humans, Molecular Sequence Data, Abnormalities, Multiple genetics, Glycine Hydroxymethyltransferase genetics, Intellectual Disability genetics
- Abstract
Folate-dependent one-carbon metabolism is critical for the synthesis of numerous cellular constituents required for cell growth, and serine hydroxymethyltransferase (SHMT) is central to this process. Our studies reveal that the gene for cytosolic SHMT (cSHMT) maps to the critical interval for Smith-Magenis syndrome (SMS) on chromosome 17p11.2. The basic organization of the cSHMT locus on chromosome 17 was determined and was found to be deleted in all 26 SMS patients examined by PCR, FISH, and/or Southern analysis. Furthermore, with respect to haploinsufficiency, cSHMT enzyme activity in patient lymphoblasts was determined to be approximately 50% that of unaffected parent lymphoblasts. Serine, glycine, and folate levels were also assessed in three SMS patients and were found to be within normal ranges. The possible effects of cSHMT hemizygosity on the SMS phenotype are discussed.
- Published
- 1995
35. Increased drug affinity as the mechanistic basis for drug hypersensitivity of a mutant type II topoisomerase.
- Author
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Froelich-Ammon SJ, Burden DA, Patchan MW, Elsea SH, Thompson RB, and Osheroff N
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Binding, Competitive, Chemokines pharmacology, Cloning, Molecular, DNA Primers, Humans, Iodine Radioisotopes, Kinetics, Mice, Molecular Sequence Data, Polymerase Chain Reaction, Receptors, Interleukin-8B, Recombinant Fusion Proteins pharmacology, Recombinant Proteins biosynthesis, Sequence Homology, Amino Acid, Interleukin-8 metabolism, Receptors, Interleukin metabolism, Recombinant Proteins metabolism
- Abstract
Altered sensitivity of topoisomerase II to anticancer drugs profoundly affects the response of eukaryotic cells to these agents. Therefore, several approaches were employed to elucidate the mechanism of drug hypersensitivity of the mutant yeast type II topoisomerase, top2H1012Y. This mutant, which is approximately 5-fold hypersensitive to ellipticine, formed DNA cleavage complexes more rapidly than the wild-type yeast enzyme in the presence of the drug. Conversely, no change in the rate of DNA religation was observed. There was, however, a correlation between increased cleavage rates and enhanced drug binding affinity. The apparent dissociation constant for ellipticine in the mutant topoisomerase II.drug.DNA ternary complex was approximately 5-fold lower than in the wild-type ternary complex. Furthermore, the apparent KD value for the mutant binary (topoisomerase II.drug) complex was approximately 2-fold lower than the corresponding wild-type complex, indicating that drug hypersensitivity is intrinsic to the enzyme. These findings strongly suggest that the enhanced ellipticine binding affinity for topoisomerase II is the mechanistic basis for drug hypersensitivity of top2H1012Y.
- Published
- 1995
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36. A mutation in yeast TOP2 homologous to a quinolone-resistant mutation in bacteria. Mutation of the amino acid homologous to Ser83 of Escherichia coli gyrA alters sensitivity to eukaryotic topoisomerase inhibitors.
- Author
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Hsiung Y, Elsea SH, Osheroff N, and Nitiss JL
- Subjects
- Base Sequence, DNA Topoisomerases, Type II genetics, DNA Topoisomerases, Type II isolation & purification, Escherichia coli drug effects, Escherichia coli genetics, Etoposide pharmacology, Genes, Bacterial, Genes, Fungal, Kinetics, Macromolecular Substances, Molecular Sequence Data, Mutagenesis, Site-Directed, Oligodeoxyribonucleotides, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae genetics, Species Specificity, Tryptophan, Anti-Infective Agents pharmacology, DNA Topoisomerases, Type II metabolism, Drug Resistance, Microbial genetics, Escherichia coli enzymology, Fluoroquinolones, Point Mutation, Quinolones pharmacology, Saccharomyces cerevisiae enzymology, Serine
- Abstract
In prokaryotic type II topoisomerases (DNA gyrases), mutations that result in resistance to quinolones frequently occur at Ser83 or Ser84 of the gyrA subunit. Mutations to Trp, Ala, and Leu have been identified, all of which confer high levels of quinolone resistance. Extensive segments of DNA gyrase are homologous to eukaryotic topoisomerase II, and Ser741 of yeast TOP2 is homologous to Ser83 of prokaryotic DNA gyrA. Introduction of the Ser741-->Trp mutation into yeast TOP2 confers resistance to 6,8-difluoro-7-(4'-hydroxyphenyl)-1-cyclopropyl- 4-quinolone-3-carboxylic acid (CP-115,953), a fluoroquinolone with substantial activity against eukaryotic topoisomerase II, whereas changing Ser741 to either Leu or Ala does not change sensitivity to quinolones. Interestingly, Ser741-->Trp in the yeast TOP2 also confers hypersensitivity to etoposide. Sensitivity to intercalating anti-topoisomerase II agents such as amsacrine is not changed by any of the three mutations. The topoisomerase II protein carrying the Ser741-->Trp mutation was overexpressed and purified. The purified mutant enzyme had enhanced levels of etoposide stabilized covalent complex as compared with the wild type enzyme and reduced cleavage with CP-115,953. Unlike the wild type enzyme, etoposide-stabilized cleavage is not readily reversible by heat. We suggest that Ser741 is near a binding site for both quinolones and etoposide and that the Ser741-->Trp mutation leads to a more stable ternary complex between etoposide, DNA, and the mutant enzyme.
- Published
- 1995
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37. A yeast type II topoisomerase selected for resistance to quinolones. Mutation of histidine 1012 to tyrosine confers resistance to nonintercalative drugs but hypersensitivity to ellipticine.
- Author
-
Elsea SH, Hsiung Y, Nitiss JL, and Osheroff N
- Subjects
- Amino Acid Sequence, Animals, DNA Topoisomerases, Type II chemistry, Drug Resistance, Humans, Kinetics, Mice, Molecular Sequence Data, Mutagenesis, Site-Directed, Recombinant Proteins antagonists & inhibitors, Recombinant Proteins metabolism, Sequence Homology, Amino Acid, Topoisomerase II Inhibitors, Anti-Infective Agents pharmacology, DNA Topoisomerases, Type II metabolism, Ellipticines pharmacology, Fluoroquinolones, Histidine, Point Mutation, Quinolones pharmacology, Saccharomyces cerevisiae enzymology, Tyrosine
- Abstract
A mutant yeast type II topoisomerase was generated by in vitro mutagenesis followed by selection in vivo for resistance to the quinolone CP-115,953. The resulting mutant enzyme had a single point mutation which converted His1012 to Tyr (top2H1012Y). top2H1012Y was overexpressed in yeast, purified, and characterized in vitro. The mutant type II topoisomerase was slightly less active than the wild type enzyme, apparently due to a decreased affinity for DNA. The affinity of the mutant enzyme for ATP was similar to that of wild type topoisomerase II. As determined by DNA cleavage assays, top2H1012Y was resistant to CP-115,953 and etoposide both prior to and following the DNA strand-passage event. In marked contrast, the mutant enzyme displayed wild type sensitivity to amsacrine and was severalfold hypersensitive to ellipticine. A similar pattern of resistance was observed in yeast cells harboring the top2H1012Y allele. Thus, it appears that the mutant type II topoisomerase can distinguish between nonintercalative and intercalative agents. Finally, the His1012-->Tyr mutation defines a potential new drug resistance-conferring region on eukaryotic topoisomerase II.
- Published
- 1995
- Full Text
- View/download PDF
38. Analysis of neurogenic contractions induced by ML-1035 and other benzamides in the guinea-pig non-stimulated isolated ileum.
- Author
-
Linnik MD, Butler BT, Elsea SH, and Ahmed NK
- Subjects
- Acetylcholine metabolism, Animals, Dose-Response Relationship, Drug, Drug Interactions, Female, Guinea Pigs, Ileum metabolism, In Vitro Techniques, Male, Metoclopramide antagonists & inhibitors, Metoclopramide pharmacology, Muscle Contraction drug effects, Muscle, Smooth drug effects, Muscle, Smooth metabolism, Neurons drug effects, Neurons metabolism, Tetrodotoxin pharmacology, Benzamides pharmacology, Ileum drug effects, Metoclopramide analogs & derivatives
- Abstract
4-Amino-5-chloro-substituted benzamides have been shown to increase gastric motility in-vivo and enhance field-stimulated and peristaltic contractions in-vitro. The present experiments examined the contractile response to a series of benzamides in the guinea-pig non-stimulated ileum. Four benzamides elicited contractions in the isolated ileum which were expressed as a percentage of the contraction induced by 1 microM acetylcholine (% acetylcholine response = 12 +/- 2, 19 +/- 3, 26 +/- 2, 51 +/- 3, n = 13, 8, 17, and 21, with EC50 values of 0.85, 1.8, 5.7, and 14.2 microM for cisapride, zacopride, metoclopramide, and ML-1035 (4-amino-5-chloro-2-((2-methylsulphinyl)-ethoxy)-N- (2-(diethylamino)-ethyl)-benzamide hydrochloride), respectively). ML-1035 contractions were completely blocked by atropine and tetrodotoxin, while ganglionic blockade with hexamethonium was ineffective. Metoclopramide has been reported to sensitize postjunctional muscarinic receptors, however, ML-1035 did not enhance acetylcholine-induced contractions. Tropisetron (ICS 205-930, 1 microM), caused a parallel rightward shift in the concentration-response curve for both ML-1035 and zacopride (EC50 = 14.2 +/- 1.3 and 1.8 +/- 0.8 microM in the absence, and 26 +/- 2.7 and 6.9 +/- 2.3 microM in the presence of tropisetron for ML-1035 and zacopride, respectively) with apparent pKB values of 5.9 and 6.0 for the respective compounds. 5-Hydroxytryptaminergic receptor desensitization by 2-methyl-5-hydroxytryptamine (5-HT3) and 5-methoxytryptamine (5-HT4), attenuated the response to ML-1035.(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1994
- Full Text
- View/download PDF
39. Defining functional drug-interaction domains on topoisomerase II by exploiting mechanistic differences between drug classes.
- Author
-
Osheroff N, Corbett AH, Elsea SH, and Westergaard M
- Subjects
- Amsacrine toxicity, Animals, Anti-Infective Agents toxicity, Antineoplastic Agents classification, DNA drug effects, DNA metabolism, Etoposide toxicity, Genistein, Humans, Isoflavones toxicity, Models, Structural, Quinolones toxicity, Topoisomerase II Inhibitors, Antineoplastic Agents toxicity, DNA Damage, DNA Topoisomerases, Type II metabolism, Fluoroquinolones
- Abstract
Topoisomerase II is the primary cellular target for a variety of antineoplastic drugs that are active against human cancers. These drugs exert their cytotoxic effects by stabilizing covalent topoisomerase II-cleaved DNA complexes that are fleeting intermediates in the catalytic cycle of the enzyme. Despite this common feature of drug action, a number of mechanistic differences between drug classes have been described. These mechanistic differences (including effects on DNA cleavage/religation, DNA strand passage, and adenosine triphosphate hydrolysis) were used as the basis for a series of competition experiments to determine whether different compounds share a common site of action on topoisomerase II or interact at distinct sites. Results of the present study strongly suggest that at least four structurally disparate antineoplastic drugs, etoposide, amsacrine, genistein, and the quinolone CP-115,953, share an overlapping interaction domain on the enzyme.
- Published
- 1994
- Full Text
- View/download PDF
40. Drug features that contribute to the activity of quinolones against mammalian topoisomerase II and cultured cells: correlation between enhancement of enzyme-mediated DNA cleavage in vitro and cytotoxic potential.
- Author
-
Elsea SH, McGuirk PR, Gootz TD, Moynihan M, and Osheroff N
- Subjects
- Animals, Anti-Infective Agents toxicity, CHO Cells, Cattle, Cell Death drug effects, Cells, Cultured, Cricetinae, Humans, Nucleic Acid Conformation, Quinolones toxicity, Structure-Activity Relationship, Anti-Infective Agents pharmacology, DNA metabolism, Fluoroquinolones, Quinolones pharmacology, Topoisomerase II Inhibitors
- Abstract
CP-115,953 [6,8-difluoro-7-(4'-hydroxyphenyl)-1-cyclopropyl-4- quinolone-3-carboxylic acid] is a novel quinolone that is highly active against topoisomerase II in vitro and in mammalian cells in culture (M. J. Robinson, B. A. Martin, T. D. Gootz, P. R. McGuirk, M. Moynihan, J. A. Sutcliffe, and N. Osheroff, J. Biol. Chem. 266:14585-14592, 1991). However, the features of the drug that contribute to its activity towards mammalian systems have not been characterized. Therefore, CP-115,953 and a series of related quinolones were examined for their activity against calf thymus topoisomerase II and cultured mammalian cells. CP-115,953 stimulated DNA cleavage mediated by the type II enzyme with a potency that was approximately 600-fold greater than that of the antimicrobial quinolone ciprofloxacin and approximately 50-fold greater than that of the antineoplastic drug etoposide. As determined by the ability to enhance enzyme-mediated DNA cleavage, quinolone activity towards calf thymus topoisomerase II was enhanced by the presence of a cyclopropyl group at the N-1 ring position and by the presence of a fluorine at C-8. Furthermore, the 4'-hydroxyphenyl substituent at the C-7 position was critical for the potency of CP-115,953 towards the mammalian type II enzyme. In this regard, the aromatic nature of the C-7 ring as well as the presence and the position of the 4'-hydroxyl group contributed greatly to drug activity. Finally, the cytotoxicity of quinolones in the CP-115,953 series towards mammalian cells paralleled the in vitro stimulation of DNA cleavage by topoisomerase II rather than the inhibition of enzyme-catalyzed DNA relaxation. This correlation strongly suggests that these quinolones promote cell death by converting topoisomerase II to a cellular poison.
- Published
- 1993
- Full Text
- View/download PDF
41. Cytotoxicity of quinolones toward eukaryotic cells. Identification of topoisomerase II as the primary cellular target for the quinolone CP-115,953 in yeast.
- Author
-
Elsea SH, Osheroff N, and Nitiss JL
- Subjects
- DNA Damage, DNA Topoisomerases, Type II genetics, Mutation, Topoisomerase II Inhibitors, Anti-Infective Agents, Cell Survival drug effects, DNA Topoisomerases, Type II metabolism, Fluoroquinolones, Quinolones pharmacology, Saccharomyces cerevisiae enzymology
- Abstract
The quinolone CP-115,953 (6,8-difluoro-7-(4-hydroxyphenyl)-1-cyclopropyl-4- quinolone-3-carboxylic acid) represents a novel mechanistic class of drugs with potent activity against eukaryotic topoisomerase II in vitro (Robinson, M. J., Martin, B. A., Gootz, T. D., McGuirk, P. R., Moynihan, M., Sutcliffe, J. A., and Osheroff, N. (1991) J. Biol. Chem. 266, 14585-14592). Although the quinolone is highly toxic to mammalian cells in culture, its mechanism of cytotoxic action is not known. Therefore, yeast was used as a model system to determine whether topoisomerase II is the primary target responsible for the in vivo effects of CP-115,953. The quinolone was equipotent to etoposide at enhancing DNA breakage mediated by the Saccharomyces cerevisiae type II enzyme. Moreover, at concentrations as low as 5 microM, CP-115,953 was cytotoxic to yeast cells that carried wild type topoisomerase II (TOP2+). By utilizing a yeast strain that expressed the top2-1 temperature-sensitive mutant, the effect of topoisomerase II activity on quinolone cytotoxicity was determined. At the permissive temperature of 25 degrees C, cells were highly sensitive to CP-115,953. However, at the semipermissive temperature of 30 degrees C (where in vivo enzyme activity is present but is greatly diminished), cells displayed only marginal sensitivity to the quinolone at concentrations as high as 50 microM. These results strongly suggest that topoisomerase II is the primary physiological target responsible for quinolone cytotoxicity and that CP-115,953 kills cells by converting the type II enzyme into a cellular poison.
- Published
- 1992
42. Pharmacokinetic evaluation of two human epidermal growth factors (hEGF51 and hEGF53) in rats.
- Author
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Kuo BS, Kusmik WF, Poole JC, Elsea SH, Chang J, and Hwang KK
- Subjects
- Amino Acid Sequence, Animals, Electrophoresis, Polyacrylamide Gel, Epidermal Growth Factor blood, Humans, Iodine Radioisotopes, Male, Molecular Sequence Data, Precipitin Tests, Rabbits, Rats, Rats, Inbred Strains, Recombinant Proteins blood, Recombinant Proteins pharmacokinetics, Sodium Dodecyl Sulfate, Trichloroacetic Acid, Epidermal Growth Factor pharmacokinetics
- Abstract
The pharmacokinetic profiles of two iodinated human epidermal growth factors (125I-hEGF51 and 125I-hEGF53) in rats receiving a single intravenous dose have been investigated using three independent bioanalytical techniques. Based on a tetrachloroacetic acid precipitation methodology, hEGF51 and hEGF53 were found to have distribution half-lives of 0.80 +/- 0.2 and 0.80 +/- 0.18 min, and elimination half-lives of 79.8 +/- 24.1 and 77.9 +/- 21.1 min, respectively. Evaluated by immunoprecipitation, distribution half-lives were 0.59 +/- 0.09 and 0.63 +/- 0.15 min, and elimination half-lives were 117.8 +/- 22.9 and 118.7 +/- 38.8 min, respectively. Both precipitation techniques produced similar, parallel plasma concentration-time curves, and there were no significant differences in other calculated kinetic parameters, including clearance and volume of distribution evaluated by either technique. Plasma disposition profiles of both peptides were also confirmed by visualization with SDS-PAGE and autoradiography, and were found to be similar to those generated by tetrachloroacetic acid and immunoprecipitation methods. Thus, three independent methods strongly suggest that both peptides have the same disposition profile, which exhibits a very rapid disappearance rate in the distribution phase followed by a much slower elimination process. These results also indicate that the pharmacokinetic behavior of human epidermal growth factor is not altered by deletion of two amino acids from the carboxyl terminus. In addition, the incubation study suggests that about 23% of the exogenous peptides were associated with red blood cells.
- Published
- 1992
43. Ethics in maternal-child nursing.
- Author
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Elsea SB
- Subjects
- Decision Making, Female, Humans, Infant, Newborn, Intensive Care Units, Neonatal, Pregnancy, Professional Staff Committees, Child Health Services, Ethics, Nursing, Maternal Health Services
- Published
- 1985
- Full Text
- View/download PDF
44. Professionally speaking: refusal of blood--an ethical issue.
- Author
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Elsea SJ and Miya PA
- Subjects
- Adult, Female, Humans, Informed Consent, Moral Obligations, Personal Autonomy, Religion and Medicine, Uterine Hemorrhage therapy, Value of Life, Blood Transfusion, Ethical Analysis, Ethics, Nursing, Jehovah's Witnesses, Patient Acceptance of Health Care
- Published
- 1981
- Full Text
- View/download PDF
45. Wellness throughout the maternity cycle.
- Author
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Tegtmeier D and Elsea S
- Subjects
- Family, Female, Health Education, Health Services Accessibility, Home Care Services, Humans, Infant Care, Infant, Newborn, Male, Nurse Midwives, Obstetric Nursing, Patient Participation, Pregnancy, Women, Working, Health Promotion, Maternal Health Services trends
- Abstract
Family-centered maternity care, increased patient participation, and the explosion of childbirth preparation and family-life education programs are viewed as positive influences toward wellness in childbearing and childrearing. Negative influences that increase stress and disrupt health care supervision include the efforts of women to combine career and motherhood, the high mobility of today's society, inadequate distribution of health care services related to financial and geographic barriers and lack of preparation for parenting. Professionals in health care services, nurses specifically as key contact persons, are challenged to develop and to promote patient participation in preconceptual educational programs to provide the following: information to foster healthier lifestyle patterns and expectations of the childbearing and childrearing life experiences; discussion groups for peer support; and skills practice sessions to allay anxiety and frustration of newborn and child caretaking. Home health care for post-partum mothers and newborns is considered an essential nursing service that becomes even more essential with early discharge plans. Incorporation of nurse midwives into the health team is viewed as a positive step toward reducing financial and geographic barriers to ongoing, quality maternal-child health supervision.
- Published
- 1984
46. Family planning--much more than the "pill".
- Author
-
Elsea SJ
- Subjects
- Family Planning Services
- Published
- 1970
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