Search

Rhincodon typus, or the whale shark, is the largest extant fish in the world and is classified as endangered on the IUCN's Red List. Due to their enormous size and conservation status, whale sharks are rarely housed in aquaria. Here we present a behavioral analysis culminating from a large effort by 89 observers from 2008-2012 to study four R. typus (ID codes: AL, TA, TR, YU) longitudinally in an aquarium setting. We found that relatively simple behavioral metrics such as swim speed, depth occupation, swimming direction, and lead-follow interactions demonstrated R. typus individual variation and responses to habitat changes. All sharks displayed increased swim speeds 30-minutes before regimented feed times, when there was scent of food being fed to other animals in the habitat. Consistently in the habitat, one male shark (YU) was recorded swimming more at depth, faster, almost exclusively clockwise, and engaged in fewer close proximity interactions with others than expected by chance. In contrast, a larger female shark (AL) was observed swimming the slowest, at the surface more than others, led other sharks more than she followed, and had strong lead-follow interactions with another shark of the opposite sex (TA). TA and TR did not differ from each other in depth profiles or speed, but did differ in their proclivity to lead or follow. Depth preferences and lead-follow interactions suggest some partitioning of the habitat and the possibility of social hierarchy in this species. These results represent the first longitudinal behavioral analysis of aquarium R. typus, offering meaningful similarities and contrasts to field observations. [ABSTRACT FROM AUTHOR]

The predictable occurrence of whale sharks, Rhincodon typus, has been well documented in several areas. However, information relating to their migratory patterns, residency times and connectivity across broad spatial scales is limited. In the present study photo-identification data is used to describe whale shark population structure and connectivity among known aggregation sites within the Western Central Atlantic Ocean (WCA). From 1999 to 2015, 1,361 individuals were identified from four distinct areas: the Yucatan Peninsula, Mexico (n = 1,115); Honduras (n = 146); northern Gulf of Mexico, United States (n = 112), and Belize (n = 49). Seasonal patterns in whale shark occurrence were evident with encounters occurring in the western Caribbean Sea earlier in the year than in the GOM. There was also a significant sex bias with 2.6 times more males present than females. Seventy sharks were observed in more than one area and the highest degree of connectivity occurred among three aggregation sites along the Mesoamerican Reef. Despite this, the majority of resightings occurred in the area where the respective sharks were first identified. This was true for the WCA as a whole, with the exception of Belize. Site fidelity was highest in Mexico. Maximum likelihood modelling resulted in a population estimate of 2,167 (95% c.i. 1585.21–2909.86) sharks throughout the entire region. This study is the first attempt to provide a broad, regional population estimate using photo-identification data from multiple whale shark aggregations. Our aim is to provide population metrics, along with the description of region-scale connectivity, that will help guide conservation action in the WCA. At a global level, rapidly growing photographic databases are allowing for researchers to look beyond the description of single aggregation sites and into the ocean-scale ecology of this pelagic species. [ABSTRACT FROM AUTHOR]

Background: The whale shark (Rhincodon typus) has by far the largest body size of any elasmobranch (shark or ray) species. Therefore, it is also the largest extant species of the paraphyletic assemblage commonly referred to as fishes. As both a phenotypic extreme and a member of the group Chondrichthyes - the sister group to the remaining gnathostomes, which includes all tetrapods and therefore also humans - its genome is of substantial comparative interest. Whale sharks are also listed as an endangered species on the International Union for Conservation of Nature's Red List of threatened species and are of growing popularity as both a target of ecotourism and as a charismatic conservation ambassador for the pelagic ecosystem. A genome map for this species would aid in defining effective conservation units and understanding global population structure. Results: We characterised the nuclear genome of the whale shark using next generation sequencing (454, Illumina) and de novo assembly and annotation methods, based on material collected from the Georgia Aquarium. The data set consisted of 878,654,233 reads, which yielded a draft assembly of 1,213,200 contigs and 997,976 scaffolds. The estimated genome size was 3.44Gb. As expected, the proteome of the whale shark was most closely related to the only other complete genome of a cartilaginous fish, the holocephalan elephant shark. The whale shark contained a novel Toll-like-receptor (TLR) protein with sequence similarity to both the TLR4 and TLR13 proteins of mammals and TLR21 of teleosts. The data are publicly available on GenBank, FigShare, and from the NCBI Short Read Archive under accession number SRP044374. Conclusions: This represents the first shotgun elasmobranch genome and will aid studies of molecular systematics, biogeography, genetic differentiation, and conservation genetics in this and other shark species, as well as providing comparative data for studies of evolutionary biology and immunology across the jawed vertebrate lineages. [ABSTRACT FROM AUTHOR]

The article presents ten simple rules for effective online outreach. Topics discussed include writing blog posts for newly published paper, need of formal planning mechanism for all online outreach projects, need of good content, and use of online social networking tools including Twitter and Facebook, to promote content, and collection of data.

This essay explores the potential of metabolomics for exotic animal research in a zoological setting. Metabolomics is a suite of analytical tools aimed at gaining a holistic understanding of animal metabolism without prior knowledge of the compounds to be measured. These metabolic fingerprints can be used to define normal metabolism for an unstudied species, to characterize the metabolic deviation of diseased animals from the normal state over time, to identify biomarker compounds that best capture such deviations, and to measure the metabolic impact of clinical and nutritional interventions. Two approaches, nuclear magnetic resonance ( NMR) and mass spectrometry ( MS) provide large amounts of complimentary pure and applied biological data. Metabolomic methods hold great potential for researchers, clinicians, and nutritionists studying exotic and aquatic animals because they can produce a huge data return on research effort, and because they do not require much a priori knowledge of the animals' metabolism, which is so often then case in zoological settings. Zoo Biol. 32:246-250, 2013. © 2012 Wiley Periodicals, Inc. [ABSTRACT FROM AUTHOR]

In a search for biomarkers of health in whale sharks and as exploration of metabolomics as a modern tool for understanding animal physiology, the metabolite composition of serum in six whale sharks (Rhincodon typus) from an aquarium collection was explored using ¹H nuclear magnetic resonance (NMR) spectroscopy and direct analysis in real time (DART) mass spectrometry (MS). Principal components analysis (PCA) of spectral data showed that individual animals could be resolved based on the metabolite composition of their serum and that two unhealthy individuals could be discriminated from the remaining healthy animals. The major difference between healthy and unhealthy individuals was the concentration of homarine, here reported for the first time in an elasmobranch, which was present at substantially lower concentrations in unhealthy whale sharks, suggesting that this metabolite may be a useful biomarker of health status in this species. The function(s) of homarine in sharks remain uncertain but it likely plays a significant role as an osmolyte. The presence of trimethylamine oxide (TMAO), another well-known protective osmolyte of elasmobranchs, at 0.1-0.3 mol L-1 was also confirmed using both NMR and MS. Twenty-three additional potential biomarkers were identified based on significant differences in the frequency of their occurrence between samples from healthy and unhealthy animals, as detected by DART MS. Overall, NMR and MS provided complementary data that showed that metabolomics is a useful approach for biomarker prospecting in poorly studied species like elasmobranchs. [ABSTRACT FROM AUTHOR]

The article presents a study which examined the health indicators and species comparisons for adults of three common wild-caught shark species, namely, Atlantic sharpnose sharks and bonnethead sharks from the western Atlantic and spiny dogfish sharks from the eastern Pacific. It mentions that the three species have minimally overlapping habitats and different foraging ecologies. Multiple differences in the plasma trace nutrient concentrations of the three species were found.

Artificial habitats for animals have high commercial and societal value. Microbial communities (microbiomes) in such habitats may play ecological roles similar to those in nature. However, this hypothesis remains largely untested. Georgia Aquarium's Ocean Voyager (OV) exhibit is a closed-system aquatic habitat that mimics the oligotrophic open ocean and houses thousands of large marine animals, including fish, sea turtles, and whale sharks. We present a 14-month time series characterizing the OV water column microbiome. The composition and stability of the microbiome differed from those of natural marine environments with similar chemical features. The composition shifted dramatically over the span of 2 weeks and was characterized by bloom events featuring members of two heterotrophic bacterial lineages with cosmopolitan distributions in the oceans. The relative abundances of these lineages were inversely correlated, suggesting an overlap in ecological niches. Transcript mapping to metagenome-assembled genomes (MAGs) of these taxa identified unique characteristics, including the presence and activity of genes for the synthesis and degradation of cyanophycin, an amino acid polymer linked to environmental stress and found frequently in cyanobacteria but rarely in heterotrophic bacteria. The dominant MAGs also contained and transcribed plasmid-associated sequences, suggesting a role for conjugation in adaptation to the OV environment. These findings indicate a highly dynamic microbiome despite the stability of the physical and chemical parameters of the water column. Characterizing how such fluctuations affect microbial function may inform our understanding of animal health in closed aquaculture systems. IMPORTANCE Public aquariums play important societal roles, for example, by promoting science education and helping conserve biodiversity. The health of aquarium animals depends on interactions with the surrounding microbiome. However, the extent to which aquariums recreate a stable and natural microbial ecosystem is uncertain. This study describes the taxonomic composition of the water column microbiome over 14 months in a large indoor aquatic habitat, the Ocean Voyager exhibit at the Georgia Aquarium. Despite stable water column conditions, the exhibit experienced blooms in which the abundance of a single bacterial strain increased to over 65% of the community. Genome analysis indicated that the OV's dominant strains share unique adaptations, notably genes for storage polymers associated with environmental stress. These results, interpreted alongside data from natural ocean systems and another artificial seawater aquarium, suggest a highly dynamic aquarium microbiome and raise questions of how microbiome stability may affect the ecological health of the habitat. [ABSTRACT FROM AUTHOR]