15 results on '"Daniele Selli"'
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2. Publisher Correction: An electrochemical thermal transistor
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Aditya Sood, Feng Xiong, Shunda Chen, Haotian Wang, Daniele Selli, Jinsong Zhang, Connor J. McClellan, Jie Sun, Davide Donadio, Yi Cui, Eric Pop, and Kenneth E. Goodson
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Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2019
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3. Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard–Jones Parameters for Water and to Study Solvation of TiO2 Nanoparticles
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Asmus Ougaard Dohn, Daniele Selli, Gianluca Fazio, Lorenzo Ferraro, Jens Jørgen Mortensen, Bartolomeo Civalleri, and Cristiana Di Valentin
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QM/MM ,multiscale ,nanoparticles ,force field parameters ,water ,titanium dioxide ,geometry optimization ,molecular dynamics ,Organic chemistry ,QD241-441 - Abstract
Metal oxide nanoparticles (NPs) are regarded as good candidates for many technological applications, where their functional environment is often an aqueous solution. The correct description of metal oxide electronic structure is still a challenge for local and semilocal density functionals, whereas hybrid functional methods provide an improved description, and local atomic function-based codes such as CRYSTAL17 outperform plane wave codes when it comes to hybrid functional calculations. However, the computational cost of hybrids are still prohibitive for systems of real sizes, in a real environment. Therefore, we here present and critically assess the accuracy of our electrostatic embedding quantum mechanical/molecular mechanical (QM/MM) coupling between CRYSTAL17 and AMBER16, and demonstrate some of its capabilities via the case study of TiO2 NPs in water. First, we produced new Lennard⁻Jones (LJ) parameters that improve the accuracy of water⁻water interactions in the B3LYP/TIP3P coupling. We found that optimizing LJ parameters based on water tri- to deca-mer clusters provides a less overstructured QM/MM liquid water description than when fitting LJ parameters only based on the water dimer. Then, we applied our QM/MM coupling methodology to describe the interaction of a 1 nm wide multilayer of water surrounding a spherical TiO2 nanoparticle (NP). Optimizing the QM/MM water⁻water parameters was found to have little to no effect on the local NP properties, which provide insights into the range of influence that can be attributed to the LJ term in the QM/MM coupling. The effect of adding additional water in an MM fashion on the geometry optimized nanoparticle structure is small, but more evident effects are seen in its electronic properties. We also show that there is good transferability of existing QM/MM LJ parameters for organic molecules⁻water interactions to our QM/MM implementation, even though these parameters were obtained with a different QM code and QM/MM implementation, but with the same functional.
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- 2018
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4. PbTe/PbSe thermoelectric nanocomposites: the impact of length modulations on lowering thermal conductivity
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Daniele Selli, Davide Donadio, and Stefano Leoni
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Inorganic Chemistry ,lead tellurides ,lead selenides ,Inorganic & Nuclear Chemistry ,Other Chemical Sciences ,thermoelectrics ,nanomaterials ,molecular dynamics ,Thermal transport - Abstract
PbTe and PbSe are among the most promising thermoelectric materials used in the mid-temperature (400–900 K) power generation range. In these materials the efficiency increase in thermoelectric performance is critically related to the lowering of lattice thermal conductivity (κL), without compromising the electronic power factor. By means of state-of-the-art equilibrium molecular dynamics (EMD), we investigate heat transport in several nanostructured PbTe/PbSe models as a function of material morphology. Layered composites show a reduction of the average κL of about 35 % with respect to the bulk. The insertion of PbSe nanoparticles into a PbTe matrix, or viceversa PbTe into PbSe reduces κL by up to 45 % while in more anisotropic nanocomposites the reduction exceeds PbSe/PbTe alloys. Layered composites show the lowest lattice thermal conductivity in the direction of layer stacking, for which an optimal thickness is identified. Along this line we provide a full account of the impact of alloying and (sub)nanostructuring on heat transport for this important class of materials. Particularly anisotropic nano-dot morphologies and layered (sub)nanocomposites emerge as a paradigm for outstanding thermoelectric materials.
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- 2022
5. Computational Electrochemistry of Water Oxidation on Metal-Doped and Metal-Supported Defective h-BN
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Cristiana Di Valentin, Hongsheng Liu, Daniele Perilli, Daniele Selli, Perilli, D, Selli, D, Liu, H, and Di Valentin, C
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Materials science ,General Chemical Engineering ,02 engineering and technology ,Electron ,Nitride ,Overpotential ,010402 general chemistry ,Electrochemistry ,computational electrochemistry, DFT, water oxidation, hexagonal boron nitride ,01 natural sciences ,Redox ,DFT ,Catalysis ,Metal ,Lattice (order) ,Environmental Chemistry ,General Materials Science ,computational electrochemistry ,metal cluster ,021001 nanoscience & nanotechnology ,nitride ,0104 chemical sciences ,General Energy ,Chemical engineering ,water oxidation ,visual_art ,visual_art.visual_art_medium ,0210 nano-technology - Abstract
Metal-doped and metal-supported two-dimensional materials are attracting a lot of interest as potentially active electrocatalysts for reduction and oxidation processes. Previously, when a non-regular 2 D h-BN layer was grown on a Cu(111) surface, metal adatoms were found to spontaneously emerge from the bulk to fill the atomic holes in the structure and become available for surface catalysis. Herein, computational electrochemistry is used to investigate and compare the performance of Cu-doped and Cu-supported pristine and defective h-BN systems for the electrocatalytic water oxidation reaction. For the various model systems, the intermediate species of this multistep oxidation process are identified and the free-energy variations for each step of reaction are computed, even for those steps that do not involve an electron or a proton transfer. Both associative and O2 direct evolution mechanisms are considered. On this thermodynamic basis, the potential-determining step, the thermodynamic-determining step, and consequently the theoretical overpotential are determined for comparison with experiments. Small Cu clusters (tetramers) trapped in the h-BN defective lattice on a Cu(111) support are found to be very active for the water oxidation reaction since such systems are characterized by a low overpotential and by a small energy cost for O2 release from the catalyst, which is often observed to be a major limit for other potential electrocatalysts.
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- 2019
6. Impact of surface curvature, grafting density and solvent type on the PEGylation of titanium dioxide nanoparticles
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Cristiana Di Valentin, Stefano Motta, Daniele Selli, Selli, D, Motta, S, and Di Valentin, C
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Molecular dynamic ,Materials science ,Biocompatibility ,Nanoparticle ,FOS: Physical sciences ,02 engineering and technology ,Polyethylene glycol ,Condensed Matter - Soft Condensed Matter ,Solvent effect ,010402 general chemistry ,01 natural sciences ,Biomaterials ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Solubility ,chemistry.chemical_classification ,Condensed Matter - Materials Science ,Bio/inorganic interface ,PEGylation ,Materials Science (cond-mat.mtrl-sci) ,Polymer ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Solvent ,Biomedicine ,chemistry ,Chemical engineering ,Soft Condensed Matter (cond-mat.soft) ,Titanium dioxide ,Solvent effects ,0210 nano-technology - Abstract
TiO2 nanoparticles (NPs) are attracting materials for biomedical applications, provided that they are coated with polymers to improve solubility, dispersion and biocompatibility. Conformation, coverage density and solvent effects largely influence their functionality and stability. In this work, we use atomistic molecular dynamics simulations to study polyethylene glycol (PEG) grafting to highly curved TiO2 NPs (2-3 nm) in different solvents. We compare the coating polymer conformations on NPs with those on (101) flat surfaces. In water, the transition from mushroom to brush conformation starts only at high density ({\sigma} = 2.25 chains/nm2). In dichloromethane (DCM), at low-medium coverage ({\sigma} < 1.35 chains/nm2), several interactions between the PEG chains backbone and undercoordinated Ti atoms are established, whereas at {\sigma} = 2.25 chains/nm2 the conformation clearly becomes brush-like. Finally, we demonstrate that these spherical brushes, when immersed in water, but not in DCM, follow the Daoud-Cotton (DC) classical scaling model for the polymer volume fraction dependence with the distance from the center of star-shaped systems.
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- 2019
7. Using Density Functional Theory to Model Realistic TiO2 Nanoparticles, Their Photoactivation and Interaction with Water
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Daniele Selli, Gianluca Fazio, Cristiana Di Valentin, Selli, D, Fazio, G, and Di Valentin, C
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simulated Extended X-ray Adsorption Fine-Structure (EXAFS) ,B3LYP ,Materials science ,excitons ,Nanoparticle ,FOS: Physical sciences ,nanospheres ,trapping ,titania/water interface ,SCC-DFTB ,Scale (descriptive set theory) ,02 engineering and technology ,Trapping ,Electron ,lcsh:Chemical technology ,010402 general chemistry ,01 natural sciences ,Catalysis ,lcsh:Chemistry ,lcsh:TP1-1185 ,Physical and Theoretical Chemistry ,exciton ,Condensed Matter - Materials Science ,Aqueous solution ,Tio2 nanoparticles ,Materials Science (cond-mat.mtrl-sci) ,021001 nanoscience & nanotechnology ,nanosphere ,0104 chemical sciences ,Photoexcitation ,lcsh:QD1-999 ,Chemical physics ,Density functional theory ,0210 nano-technology - Abstract
Computational modeling of titanium dioxide nanoparticles of realistic size is extremely relevant for the direct comparison with experiments but it is also a rather demanding task. We have recently worked on a multistep/scale procedure to obtain global optimized minimum structures for chemically stable spherical titania nanoparticles of increasing size, with diameter from 1.5 nm (~300 atoms) to 4.4 nm (~4000 atoms). We use first self-consistent-charge density functional tight-binding (SCC-DFTB) methodology to perform thermal annealing simulations to obtain globally optimized structures and then hybrid density functional theory (DFT) to refine them and to achieve high accuracy in the description of structural and electronic properties. This allows also to assess SCC-DFTB performance in comparison with DFT(B3LYP) results. As a further step, we investigate photoexcitation and photoemission processes involving electron/hole pair formation, separation, trapping and recombination in the nanosphere of medium size by hybrid DFT. Finally, we show how a recently defined new set of parameters for SCC-DFTB allows for a proper description of titania/water multilayers interface, which paves the way for modeling large realistic nanoparticles in aqueous environment.
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- 2017
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8. Native surface oxide turns alloyed silicon membranes into nanophononic metamaterials with ultralow thermal conductivity
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Daniele Selli, Shiyun Xiong, Sanghamitra Neogi, and Davide Donadio
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Silicon ,Phonon ,Mean free path ,Fluids & Plasmas ,Oxide ,chemistry.chemical_element ,FOS: Physical sciences ,Germanium ,02 engineering and technology ,01 natural sciences ,chemistry.chemical_compound ,Condensed Matter::Materials Science ,Thermal conductivity ,Engineering ,0103 physical sciences ,010306 general physics ,Physics ,Condensed Matter - Materials Science ,Condensed matter physics ,Resonance ,Materials Science (cond-mat.mtrl-sci) ,021001 nanoscience & nanotechnology ,cond-mat.mtrl-sci ,Membrane ,chemistry ,Chemical physics ,Physical Sciences ,Chemical Sciences ,0210 nano-technology - Abstract
A detailed understanding of the relation between microscopic structure and phonon propagation at the nan oscale is essential to design materials with desired phononic and thermal properties.Here we uncover a new mechanism of phonon interaction in surface oxidized membranes, i.e., native oxide layers interact with phonons in ultra-thin silicon membranes through local resonances. The local resonances reduce the low frequency phonon group velocities and shorten their mean free path. This effect opens up a new strategy for ultralow thermal conductivity design as it complements the scattering mechanism which scatters higher frequency modes effectively. The combination of native oxide layer and alloying with germanium in concentration as small as 5% reduces the thermal conductivity of silicon membranes to 100 time lower than the bulk. In addition, the resonance mechanism produced by native oxide surface layers is particularly effective for thermal condutivity reduction even at very low temperatures, at which only low frequency modes are populated., Comment: 6 pages, 5 figures, Accepted for publication in Physical Review B
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- 2017
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9. π Magnetism of Carbon Monovacancy in Graphene by Hybrid Density Functional Calculations
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Costanza Ronchi, Daniele Selli, Gianluca Fazio, Martina Datteo, Daniele Perilli, Lara Ferrighi, Cristiana Di Valentin, Ronchi, C, Datteo, M, Perilli, D, Ferrighi, L, Fazio, G, Selli, D, and Di Valentin, C
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Magnetic moment ,Condensed matter physics ,Spin states ,Magnetism ,Chemistry ,Fermi level ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Hybrid functional ,Magnetization ,symbols.namesake ,General Energy ,Graphene, Magnetism, Monovacancy, B3LYP, DFT ,0103 physical sciences ,symbols ,Physical and Theoretical Chemistry ,010306 general physics ,0210 nano-technology ,Spin (physics) ,Ground state - Abstract
Understanding magnetism in defective graphene is paramount to improve and broaden its technological applications. A single vacancy in graphene is expected to lead to a magnetic moment with both a σ (1 μB) and a π (1 μB) component. Theoretical calculations based on standard LDA or GGA functional on periodic systems report a partial quenching of the π magnetization (0.5 μB) due to the crossing of two spin split bands at the Fermi level. In contrast, STS experiments ( Phys. Rev. Lett. 2016, 117, 166801) have recently proved the existence of two defect spin states that are separated in energy by 20–60 meV. In this work, we show that self-interaction corrected hybrid functional methods (B3LYP-D*) are capable of correctly reproducing this finite energy gap and, consequently, provide a π magnetization of 1 μB. The crucial role played by the exact exchange is highlighted by comparison with PBE-D2 results and by the magnetic moment dependence with the exact exchange portion in the functional used. The ground state ferromagnetic planar solution is compared to the antiferromagnetic and to the diamagnetic ones, which present an out-of-plane distortion. Periodic models are then compared to graphene nanoflakes of increasing size (up to C383H48). For large models, the triplet spin configuration (total magnetization 2 μB) is the most stable, independently of the functional used, which further corroborates the conclusions of this work and puts an end to the long-debated issue of the magnetic properties of an isolated C monovacancy in graphene
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- 2017
10. Ab initio investigation of polyethylene glycol coating of TiO2 surfaces
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Daniele Selli, Cristiana Di Valentin, Selli, D, and DI VALENTIN, C
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Anatase ,Materials science ,Nanomedicine, DFT, Polyethelen Glycol, Hybrid Systems ,Ab initio ,02 engineering and technology ,Polyethylene glycol ,engineering.material ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,Adsorption ,Coating ,PEG ratio ,Molecule ,Organic chemistry ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Polymer ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,General Energy ,chemistry ,Chemical engineering ,engineering ,0210 nano-technology - Abstract
In biomedical applications, TiO2 nanoparticles are generally coated with polymers to prevent agglomeration, improve biocompatibility, and reduce cytotoxicity. Although the synthesis processes of such composite compounds are well established, there is still a substantial lack of information on the nature of the interaction between the titania surface and the organic macromolecules. In this work, the adsorption of polyethylene glycol (PEG) on the TiO2 (101) anatase surface is modeled by means of dispersion-corrected density functional theory (DFT-D2) calculations. The two extreme limits of an infinite PEG polymer [-(OCH2CH2)n], on one side, and of a short PEG dimer molecule [H(OCH2CH2)2OH], on the other, are analyzed. Many different molecular configurations and modes of adsorption are compared at increasing surface coverage densities. At low and medium coverage, PEG prefers to lay down on the surface, while at full coverage, the adsorption is maximized when PEG molecules bind perpendicularly to the surface and interact with each other through lateral dispersions, following a mushroom to brush transition. Finally, we also consider the adsorption of competing water molecules at different coverage densities, assessing whether PEG would remain bonded to the surface or desorb in the presence of the aqueous solvent. (Chemical Equation Presented).
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- 2016
11. Hierarchical thermoelectrics: Crystal grain boundaries as scalable phonon scatterers
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Davide Donadio, Salah Eddine Boulfelfel, Daniele Selli, Philipp Schapotschnikow, Stefano Leoni, Selli, D, Boulfelfel, S, Schapotschnikow, P, Donadio, D, and Leoni, S
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Phase transition ,Molecular dynamic ,Materials science ,Phonon ,Thermoelectric equipment ,Nanotechnology ,02 engineering and technology ,Inorganic compound ,010402 general chemistry ,01 natural sciences ,Different length scale ,Crystal ,Thermal conductivity ,Perfect crystal ,Thermoelectric effect ,General Materials Science ,QD ,Thermoelectric propertie ,Condensed matter physics ,Thermal conductivity reduction ,Lattice thermal conductivity ,Grain boundarie ,Thermoelectricity ,021001 nanoscience & nanotechnology ,Thermoelectric materials ,0104 chemical sciences ,Temperature distribution ,Generation of electrical energy ,Molecular dynamics technique ,Temperature dependence ,Grain boundary ,Carrier concentration ,Thermo-Electric material ,0210 nano-technology - Abstract
Thermoelectric materials are strategically valuable for sustainable development, as they allow for the generation of electrical energy from wasted heat. In recent years several strategies have demonstrated some efficiency in improving thermoelectric properties. Dopants affect carrier concentration, while thermal conductivity can be influenced by alloying and nanostructuring. Features at the nanoscale positively contribute to scattering phonons, however those with long mean free paths remain difficult to alter. Here we use the concept of hierarchical nano-grains to demonstrate thermal conductivity reduction in rocksalt lead chalcogenides. We demonstrate that grains can be obtained by taking advantage of the reconstructions along the phase transition path that connects the rocksalt structure to its high-pressure form. Since grain features naturally change as a function of size, they impact thermal conductivity over different length scales. To understand this effect we use a combination of advanced molecular dynamics techniques to engineer grains and to evaluate thermal conductivity in PbSe. By affecting grain morphologies only, i.e. at constant chemistry, two distinct effects emerge: the lattice thermal conductivity is significantly lowered with respect to the perfect crystal, and its temperature dependence is markedly suppressed. This is due to an increased scattering of low-frequency phonons by grain boundaries over different size scales. Along this line we propose a viable process to produce hierarchical thermoelectric materials by applying pressure via a mechanical load or a shockwave as a novel paradigm for material design.
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- 2016
12. Superhard sp3 carbon allotropes with odd and even ring topologies
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Stefano Leoni, Roman Martoňák, Daniele Selli, Igor A. Baburin, Selli, D, Baburin, I, Martoňák, R, and Leoni, S
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X-Ray-Diffraction ,Materials science ,Crystal-Structure Prediction ,FOS: Physical sciences ,Primitive cell ,Ring (chemistry) ,law.invention ,Transformation ,law ,Phase (matter) ,Atom ,Pressure ,Graphite ,Condensed Matter - Materials Science ,Metadynamic ,Graphene ,Systems ,Materials Science (cond-mat.mtrl-sci) ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Crystallography ,Orthorhombic crystal system ,Diamond ,Room-Temperature ,Simulation ,Monoclinic crystal system - Abstract
Four sp3 carbon allotropes with six, eight, and 16 atoms per primitive cell have been derived using a combination of metadynamics simulations and topological scan. A chiral orthorhombic phase oC16 (C2221) was found to be harder than monoclinic M-carbon and shows excellent stability in the high-pressure range. A second orthorhombic phase of Cmmm symmetry, by \sim 0.028 eV/atom energetically lower than W-carbon, can be formed from graphite at \sim 9 GPa. In general, the mechanical response under pressure was found to depend on the structure topology, which reflects the way rings are formed from an initial graphene layer stacking., Comment: 5 pages, 5 figures
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- 2011
13. The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages
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Eugenia D’Atanasio, Beniamino Trombetta, Maria Bonito, Andrea Finocchio, Genny Di Vito, Mara Seghizzi, Rita Romano, Gianluca Russo, Giacomo Maria Paganotti, Elizabeth Watson, Alfredo Coppa, Paolo Anagnostou, Jean-Michel Dugoujon, Pedro Moral, Daniele Sellitto, Andrea Novelletto, and Fulvio Cruciani
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MSY ,Target next generation sequencing ,Green Sahara ,Trans-Saharan haplogroups ,Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract Background Little is known about the peopling of the Sahara during the Holocene climatic optimum, when the desert was replaced by a fertile environment. Results In order to investigate the role of the last Green Sahara in the peopling of Africa, we deep-sequence the whole non-repetitive portion of the Y chromosome in 104 males selected as representative of haplogroups which are currently found to the north and to the south of the Sahara. We identify 5,966 mutations, from which we extract 142 informative markers then genotyped in about 8,000 subjects from 145 African, Eurasian and African American populations. We find that the coalescence age of the trans-Saharan haplogroups dates back to the last Green Sahara, while most northern African or sub-Saharan clades expanded locally in the subsequent arid phase. Conclusions Our findings suggest that the Green Sahara promoted human movements and demographic expansions, possibly linked to the adoption of pastoralism. Comparing our results with previously reported genome-wide data, we also find evidence for a sex-biased sub-Saharan contribution to northern Africans, suggesting that historical events such as the trans-Saharan slave trade mainly contributed to the mtDNA and autosomal gene pool, whereas the northern African paternal gene pool was mainly shaped by more ancient events.
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- 2018
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14. Optimizing PEGylation of TiO 2 Nanocrystals through a Combined Experimental and Computational Study
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Roberto Simonutti, M Tawfilas, Cristiana Di Valentin, Michele Mauri, Daniele Selli, Selli, D, Tawfilas, M, Mauri, M, Simonutti, R, and Di Valentin, C
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Materials science ,Biocompatibility ,General Chemical Engineering ,Nanotechnology ,02 engineering and technology ,General Chemistry ,Metal oxide nanoparticles ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Article ,0104 chemical sciences ,PEG, MD, NMR, TiO2 ,Nanocrystal ,PEG ratio ,Materials Chemistry ,PEGylation ,Circulation time ,0210 nano-technology - Abstract
PEGylation of metal oxide nanoparticles is the common approach to improve their biocompatibility and in vivo circulation time. In this work, we present a combined experimental and theoretical study to determine the operating condition that guarantee very high grafting densities, which are desirable in any biomedical application. Moreover, we present an insightful conformational analysis spanning different coverage regimes and increasing polymer chain lengths. Based on 13C NMR measurements and molecular dynamics simulations, we show that classical and popular models of polymer conformation on surfaces fail in determining the mushroom-to-brush transition point and prove that it actually takes place only at rather high grafting density values.
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15. A new topology of the human Y chromosome haplogroup E1b1 (E-P2) revealed through the use of newly characterized binary polymorphisms.
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Beniamino Trombetta, Fulvio Cruciani, Daniele Sellitto, and Rosaria Scozzari
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Medicine ,Science - Abstract
Haplogroup E1b1, defined by the marker P2, is the most represented human Y chromosome haplogroup in Africa. A phylogenetic tree showing the internal structure of this haplogroup was published in 2008. A high degree of internal diversity characterizes this haplogroup, as well as the presence of a set of chromosomes undefined on the basis of a derived character. Here we make an effort to update the phylogeny of this highly diverse haplogroup by including seven mutations which have been newly discovered by direct resequencing. We also try to incorporate five previously-described markers which were not, however, reported in the 2008 tree. Additionally, during the process of mapping, we found that two previously reported SNPs required a new position on the tree. There are three key changes compared to the 2008 phylogeny. Firstly, haplogroup E-M2 (former E1b1a) and haplogroup E-M329 (former E1b1c) are now united by the mutations V38 and V100, reducing the number of E1b1 basal branches to two. The new topology of the tree has important implications concerning the origin of haplogroup E1b1. Secondly, within E1b1b1 (E-M35), two haplogroups (E-V68 and E-V257) show similar phylogenetic and geographic structure, pointing to a genetic bridge between southern European and northern African Y chromosomes. Thirdly, most of the E1b1b1* (E-M35*) paragroup chromosomes are now marked by defining mutations, thus increasing the discriminative power of the haplogroup for use in human evolution and forensics.
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- 2011
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