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Background Crustose coralline algae (CCA) are calcifying red macroalgae that play important ecological roles including stabilisation of reef frameworks and provision of settlement cues for a range of marine invertebrates. Previous research into the responses of CCA to ocean warming (OW) and ocean acidification (OA) have found magnitude of effect to be species-specific. Response to OW and OA could be linked to divergent underlying molecular processes across species. Results Here we show Sporolithon durum, a species that exhibits low sensitivity to climate stressors, had little change in metabolic performance and did not significantly alter the expression of any genes when exposed to temperature and pH perturbations. In contrast, Porolithon onkodes, a major coral reef builder, reduced photosynthetic rates and had a labile transcriptomic response with over 400 significantly differentially expressed genes, with differential regulation of genes relating to physiological processes such as carbon acquisition and metabolism. The differential gene expression detected in P. onkodes implicates possible key metabolic pathways, including the pentose phosphate pathway, in the stress response of this species. Conclusions We suggest S. durum is more resistant to OW and OA than P. onkodes, which demonstrated a high sensitivity to climate stressors and may have limited ability for acclimatisation. Understanding changes in gene expression in relation to physiological processes of CCA could help us understand and predict how different species will respond to, and persist in, future ocean conditions predicted for 2100.

Introduction. The genus Lepraria includes diffuse or indefinitely delimited species, always sterile, Lendemer (1) naming it „the most unusual member of the sterile lichen crusts”. According to Tonsberg (2), the leprarioid state appeared as an adaptation to a substrate characterized by dry surfaces, in sites with high humidity and low illumination. The thallus is leprose with an entirely sorediate surface. The lack of fruiting bodies has made the lichens from this group among the least known and studied for a long time. The increase in the number of studies on sterile crustose lichens in recent period has led to an increase in the number of accepted species of the genus Lepraria. The information on the genus Lepraria is not uniformly distributed, the current checklist describes only two species, L. caesioalba and L. finkii in Romania. The recent appearance of several studies that indicate the presence in Romania of other species of the genus mentioned, created the motivation of this study. Material and methods. This study is based on material from the Babes-Bolyai University (CL) herbaria in Cluj-Napoca, Romania and literature data. For 13 species, specimens have been examined. Results. The key for the species of genus Lepraria is proposed, adapted from Wirth (3). The species distribution maps in Romania are given. Conclusions. Fifteen Romanian species are revised, Lepraria eburnea, L. ecorticata, L. umbricola were reported from two locations, L. neglecta was found only in one location. Most widely distributed species in Romania seems to be L. finkii and L. membranacea.

Dew is commonly regarded as an important water source for lichens. This is also the case for crustose lichens that are attached to the substrate, whether rocks or soil. While being verified during ample research on rock-dwelling lichens in the Negev, the findings from soil-dwelling lichens (lichen biocrusts) are not conclusive. In the Tabernas Desert, the soil surface is characterized by a lush cover of crustose lichens. These soil biocrusts (biological soil crusts) were reported to use dew for photosynthesis while, at the same time, it was also observed that these crustose chlorolichens are relatively non-wettable. In an attempt to explore the apparent controversy, two year-long meteorological data (minimum air temperature and relative humidity, RH), during which chlorolichens were thought to utilize dew for photosynthesis (2006–2007) were analyzed. The analysis includes a comparison to the meteorological conditions that prevailed in the Negev during 135 days of manual dew measurements. As found for the Negev, net photosynthesis by the chlorolichens is expected once the RH, as measured at the meteorological station, is ≥90% while vapor condensation (dew) is expected once RH is ≥95%. RH in the Negev was substantially higher than the average RH of 75.0–87.2% registered during the rainless days of 2006–2007 in the Tabernas, implying that RH in the Tabernas is too low to facilitate frequent dew formation and net photosynthesis by the lichens. Photosynthesis in the Tabernas is mainly confined to rainy periods, taking place either due to direct wetting by rain, or following vapor condensation from the subsurface (distillation). Our findings do not support the view that dew is an important water source for the establishment and growth of crustose soil lichens in the Tabernas. Moreover, the low RH in the Tabernas may also imply that dew may only have a very limited role in providing water to lithobionts in this ecosystem.

Prior exposure to variable environmental conditions is predicted to influence the resilience of marine organisms to global change. We conducted complementary 4-month field and laboratory experiments to understand how a dynamic, and sometimes extreme, environment influences growth rates of a tropical reef-building crustose coralline alga and its responses to ocean acidification (OA). Using a reciprocal transplant design, we quantified calcification rates of the Caribbean coralline Lithophyllum sp. at sites with a history of either extreme or moderate oxygen, temperature, and pH regimes. Calcification rates of in situ corallines at the extreme site were 90% lower than those at the moderate site, regardless of origin. Negative effects of corallines originating from the extreme site persisted even after transplanting to more optimal conditions for 20 weeks. In the laboratory, we tested the separate and combined effects of stress and variability by exposing corallines from the same sites to either ambient (Amb: pH 8.04) or acidified (OA: pH 7.70) stable conditions or variable (Var: pH 7.80-8.10) or acidified variable (OA-Var: pH 7.45–7.75) conditions. There was a negative effect of all pH treatments on Lithophyllum sp. calcification rates relative to the control, with lower calcification rates in corallines from the extreme site than from the moderate site in each treatment, indicative of a legacy effect of site origin on subsequent response to laboratory treatment. Our study provides ecologically relevant context to understanding the nuanced effects of OA on crustose coralline algae, and illustrates how local environmental regimes may influence the effects of global change.

With increasing maritime activities in the proximity of coral reefs, a growing number of manmade structures are becoming available for coral colonisation. Yet, little is known about the sessile community composition of such artificial reefs in comparison with that of natural coral reefs. Here, we compared the diversity of corals and their competitors for substrate space between a centuries-old manmade structure and the nearest natural reef at St. Eustatius, eastern Caribbean. The artificial reef had a significantly lower species richness and fewer competitive interactions than the natural reef. The artificial reef was dominated by a cover of crustose coralline algae and zoantharians, instead of turf algae and fire corals on the natural reef. Significant differences in species composition were also found between exposed and sheltered sites on both reefs. Our study indicates that even a centuries-old manmade reef cannot serve as a surrogate for natural reefs.

The resilience of coral reefs is dependent on the ability of corals to settle after disturbances. While crustose coralline algae (CCA) are considered important substrates for coral settlement, it remains unclear whether coral larvae respond to CCA metabolites and microbial cues when selecting sites for attachment and metamorphosis. This study tested the settlement preferences of an abundant coral species (Acropora cytherea) against six different CCA species from three habitats (exposed, subcryptic and cryptic), and compared these preferences with the metabolome and microbiome characterizing the CCA. While all CCA species induced settlement, only one species (Titanoderma prototypum) significantly promoted settlement on the CCA surface, rather than on nearby dead coral or plastic surfaces. This species had a very distinct bacterial community and metabolomic fingerprint. Furthermore, coral settlement rates and the CCA microbiome and metabolome were specific to the CCA preferred habitat, suggesting that microbes and/or chemicals serve as environmental indicators for coral larvae. Several amplicon sequence variants and two lipid classes—glycoglycerolipids and betaine lipids—present in T. prototypum were identified as potential omic cues influencing coral settlement. These results support that the distinct microbiome and metabolome of T. prototypum may promote the settlement and attachment of coral larvae.

Crustose coralline algae (CCA) play vital roles in producing and stabilizing reef structures and inducing the settlement and metamorphosis of invertebrate larvae in coral reef ecosystems. However, little is known about the bacterial communities associated with healthy and bleached CCA and their interactions with coral larval settlement. We collected samples of healthy, middle semi-bleached, and bleached CCA Porolithon onkodes from Sanya Bay in the South China Sea and investigated their influences on the larval settlement and metamorphosis of the reef-building coral Pocillopora damicornis. The larval settlement/metamorphosis rates all exceeded 70% when exposed to healthy, middle semi-bleached, and bleached algae. Furthermore, the compositions of bacterial community using amplicon pyrosequencing of the V3–V4 region of 16S rRNA were investigated. There were no obvious changes in bacterial community structure among healthy, middle semi-bleached, and bleached algae. Alphaproteobacteria, Bacteroidetes, and Gammaproteobacteria were dominant in all samples, which may contribute to coral larval settlement. However, the relative abundances of several bacterial communities varied among groups. The relative abundances of Mesoflavibacter, Ruegeria, Nautella, and Alteromonas in bleached samples were more than double those in the healthy samples, whereas Fodinicurvata and unclassified Rhodobacteraceae were significantly lower in the bleached samples. Additionally, others at the genus level increased significantly from 8.5% in the healthy samples to 22.93% in the bleached samples, which may be related to algal bleaching. These results revealed that the microbial community structure associated with P. onkodes generally displayed a degree of stability. Furthermore, bleached alga was still able to induce larval settlement and metamorphosis.

Macroalgal forests play a key role in shallow temperate rocky reefs worldwide, supporting communities with high productivity and providing several ecosystem services. Sea urchin grazing has been increasingly influencing spatial and temporal variation in algae distributions and it has become the main cause for the loss of these habitats in many coastal areas, causing a phase shift from macroalgae habitats to barren grounds. The low productive barrens often establish as alternative stable states and only a major reduction in sea urchin density can trigger the recovery of macroalgal forests. The present study aims to assess if the 2018 disease outbreak, responsible for a strong reduction in the sea urchinDiadema africanumdensities in Madeira Island, was able to trigger a reverse shift from barren grounds into macroalgae-dominated state. By assessing the diversity and abundance of benthic sessile organisms, macroinvertebrates and fishes before, during and after that particular mass mortality event, we evaluate changes in benthic assemblages and relate them to variations in grazer and herbivore densities. Our results revealed a clear shift from barren state to a macroalgae habitat, with barrens characterized by bare substrate, sessile invertebrate and Crustose Coralline Algae (CCA) disappearing after the mortality event. Overall variations in benthic assemblages was best explained by four taxa (among grazers and herbivores species). However, it was the 2018 demise ofD. africanumand its density reduction that most contributed to the reverse shift from a long stable barren state to a richer benthic assemblage with higher abundance of macroalgae. Despite this recent increase in macroalgae dominated habitats, their stability and persistence in Madeira Island is fragile, since it was triggered by an unpredictable disease outbreak and depends on howD. africanumpopulations will recover. With no control mechanisms, local urchin populations can easily reach the tipping point needed to promote a new shift into barren states. New conservation measures and active restoration are likely required to maintain and promote the local stability of macroalgal forests.

Phyllopsora is a crustose to squamulose lichen genus inhabiting the bark of trees in moist tropical forests and rainforests. Species identification is generally challenging and is mainly based on ascospore morphology, thallus morphology and anatomy, vegetative dispersal units, and on secondary chemistry. While regional treatments of the genus have been conducted for Africa, South America and Australia, there exists no study focusing on the Asian and Melanesian species. Previously, 24 species of Phyllopsora s. str. have been reported from major national studies and checklists representing 13 countries. We have studied herbarium material of 625 Phyllopsora specimens from 18 countries using morphology, anatomy, secondary chemistry, and molecular data to investigate the diversity of Phyllopsora species in Asia and Melanesia. We report the occurrence of 28 species of Phyllopsora including the following three species described as new to science: P. sabahana from Malaysia, P. siamensis from Thailand and P. pseudocorallina from Asia and Africa. Eight species are reported as new to Asia. A key to the Asian and Melanesian species of Phyllopsora is provided. This Journal is a supporter of open science. Open access to content is clearly marked, with text and/or the open access logo, on all materials published under this model. Unless otherwise stated, open access content is published in accordance with the Creative Commons Attribution 4.0 licence (CC-BY). This particular licence allows the copying, displaying and distribution of the content at no charge, provided that the author and source are credited.

Lichen is a symbiotic organism consisting of a photobiont (green algae or cyanobacterium) and a mycobiont (fungal). A taxonomic study of the crustose lichens in the forest of TAHURA R. Soeryohad been conducted based on morphological, anatomical, and chemical characters. In this research, we used the method of descriptive exploration to identify the crustose lichens and to study the distribution of the species in the forest of TAHURA R. Soeryo. Twenty species of crustose lichens with one unidentified species and one specimen identified to the group of family are reported. They are Graphina, Graphis, Phaeographis, Pertusaria, Pachyphiale, Phlyctis, Lepraria, Lecanora, Lecania, Cyphellium, and Megalospora. This research also found the new record species of Megalospora kalbii in Java. Crustose lichens are found in the areas with high light intensity of ≥ 1000 lux, average humidity of ≤ 90%, average temperature of18-190C, and at altitudes of ±1640 dpl. Graphina ruiziana could only be found at the altitude of ± 1780 dpl. The identification key to its species and distributions of other species are presented also in the article.

Increasing atmospheric CO2 is driving major environmental changes in the ocean, such as an increase in average ocean temperature, a decrease in average ocean pH (ocean acidification or OA), and an increase in the number and severity of extreme climatic events (e.g., anomalous temperature events and heatwaves). Uncertainty exists in the capacity for species to withstand these stressors occurring concomitantly. Here, we tested whether an acclimation history of ocean warming (OW) and OA affects the physiological responses of an abundant, reef-building species of crustose coralline algae (CCA), Porolithon cf. onkodes, to chronic and acute thermal stress. To address this, we exposed algae to varying temperature and pH levels for 6 weeks and this chronic treatment experiment was followed by an acute exposure to an anomalous temperature event (+4–6°C from acclimation temperature). Net photosynthetic rate was negatively affected across all treatments by increasing temperature during the acute temperature event, however, algae acclimated to the control temperature were able to maintain photosynthetic rates for +4°C above their acclimation temperature, whereas algae acclimated to elevated temperature were not. Average relative change in O2 produced resulted in a 100–175% decrease, with the largest decrease found in algae acclimated to the combined treatment of elevated temperature and reduced pH. We conclude that acclimation to chronic global change stressors (i.e., OW and OA) will reduce the tolerance of P. cf. onkodes to anomalous increases in temperature, and this may have implications for reef building processes.

Current trends emphasize the importance of the examination of the functional composition of lichens, which may provide information on the species realized niche diversity and community assembly processes, thus enabling one to understand the specific adaptations of lichens and their interaction with the environment. We analyzed the distribution and specialization of diverse morphological, anatomical and chemical (lichen secondary metabolites) traits in lichen communities in a close-to-natural forest of lowland Europe. We considered these traits in relation to three levels of forest ecosystem organization: forest communities, phorophyte species and substrates, in order to recognize the specialization of functional traits to different levels of the forest complexity. Traits related to the sexual reproduction of mycobionts (i.e., ascomata types: lecanoroid apothecia, lecideoid apothecia, arthonioid apothecia, lirellate apothecia, stalked apothecia and perithecia) and asexual reproduction of mycobionts (pycnidia, hyphophores and sporodochia) demonstrated the highest specialization to type of substrate, tree species and forest community. Thallus type (foliose, fruticose, crustose and leprose thalli), ascospore dark pigmentation and asexual reproduction by lichenized diaspores (soredia and isidia) revealed the lowest specialization to tree species and substrate, as well as to forest community. Results indicate that lichen functional trait assemblage distribution should not only be considered at the level of differences in the internal structure of the analyzed forest communities (e.g., higher number of diverse substrates or tree species) but also studied in relation to specific habitat conditions (insolation, moisture, temperature, eutrophication) that are characteristic of a particular forest community. Our work contributes to the understanding of the role of the forest structure in shaping lichen functional trait composition, as well as enhancing our knowledge on community assembly rules of lichen species.

Purpose The purpose of this paper is to prove and qualify the influence of textured surface substrates morphology and chemical composition on the growth and propagation of transplanted corals. Use additive manufacturing and silicone moulds for converting three-dimensional samples into limestone mortar with white Portland cement substrates for coral growth. Design/methodology/approach Tiles samples were designed and printed with different geometries and textures inspired by nature marine environment. Commercial coral frag tiles were analysed through scanning electron microscopy (SEM) to identify the main chemical elements. Raw materials and coral species were selected. New base substrates were manufactured and deployed into a closed-circuit aquarium to monitor the coral weekly evolution process and analyse the results obtained. Findings Experimental results provided positive statistical parameters for future implementation tests, concluding that the intensity of textured surface, interfered favourably in the coralline algae biofilm growth. The chemical composition and design of the substrates were determinant factors for successful coral propagation. Recesses and cavities mimic the natural rocks aspect and promoted the presence and interaction of other species that favour the richness of the ecosystem. Originality/value Additive manufacturing provided an innovative method of production for ecology restoration areas, allowing rapid prototyping of substrates with high complexity morphologies, a critical and fundamental attribute to guarantee coral growth and Crustose Coralline Algae. The result of this study showed the feasibility of this approach using three-dimensional printing technologies.

In this study, host plant - lichen specificity was investigated. Data was collected from 1000m2sampling plots at each of four locations with an established 50m x 20m plot at each site. Forty-one trees from across five species were examined using (10cm by 50cm) ladder quadrats on tree trunks (N, S, E, W) at 150cm height. A total of 14978 individual lichens were identified that yielded 10 families, 13 genera and 18 species.Swietenia mahagonishowed the highest average corticolous lichen species composition, followed byTerminalia catappaandMelicoccus bijugalesrespectively.Cocos nuciferahad a higher average species recorded thanMangifera indica. Crustose lichens were the most prominent corticolous lichens observed (61%) with the most individuals in Graphidaceae and Arthoniaceae. Foliose lichens (28%) showed the most abundance in Parmeliaceae, Caliciaceae and Collemataceae. Of the taxa recorded, 22.2% were restricted to specific trees.C. parasitica,H. laevigata,U. cornutawere restricted toS. mahagoni.D. applanatawas restricted toC. nucifera. 22.2% of recorded species were found on all of the tree hosts that were examined.Bacidia laurocerasi,Flavoparmelia caperata,Flavoparmelia sorediansandGraphina anguina.S. mahagonihosted 88.9% of all recorded species.Swietenia mahagonishowed the highest average of recorded corticolous lichen species of all host trees with 7.58.Mangifera indicashowed the lowest average with 4. The maximum number of species (10) was recorded on oneS. mahagonitree

Located on the northern coast of Santa Maria Island (Azores Archipelago, central North Atlantic), the Lagoinhas section preserves a carbonate buildup correlated with Marine Isotope Substage (MIS) 5e, the warmest interval of the Last Interglacial. The buildup is formed mainly by crustose coralline algae (CCA) identified as Spongites sp., and some subordinate crusts of Lithophyllum sp. and Neogoniolithon sp., as well as cf. Titanoderma sp. Extant CCA buildups are not recorded in the archipelago. Herein, we describe in detail the morphological and taphonomical features of the Lagoinhas CCA buildup and interpret the environment in which it grew. Additionally, this buildup is compared with another of similar age, exposed in the Prainha-Praia do Calhau section on the island's opposite southern coast. The hydrodynamic regime appears to play a crucial role in the development of Azorean CCA buildups during the MIS 5e. We thank Direccao Regional da Ciência e Tecnologia (Regional Government of the Azores), FCT (Fundação para a Ciência e a Tecnologia) of the Portuguese Government, and Camara Municipal de Vila do Porto for financial support. We also acknowledge the field assistance of Camara Municipal de Vila do Porto. We are grateful to the organizers and participants of the 16 editions of the International Workshop Palaeontology in Atlantic Islands who helped with fieldwork (2002 2020). A.C.R. was supported by a grant SFRH/BPD/117810/2016 from FCT (Fundação para Ciência e Tecnologia), Portugal. S.P.A. and R.S.R. acknowledge their research contracts (IF/00465/2015 and IF/01641/2015, respectively) funded by Fundação para a Ciência e a Tecnologia (FCT). C.S.M. is benefiting from a PhD grant M3.1.a/F/100/2015 from Fundo Regional para a Ciência e Tecnologia (FRCT). This work was supported by FEDER funds through the Operational Programme for Competitiveness Factors -COMPETE, by Portuguese National Funds through FCT under the projects UID/BIA/50027/2013, UID/BIA/00329/2013-2023, POCI-01-0145-FEDER-006821, PLATMAR (PTDC/GEO-GEO/0051/2014) and under DRCT-M1.1.a/005/Funcionamento-C-/2016 (CIBIO-A) project from FRCT, and by FEDER funds (in 85%) and by funds of the Regional Government of the Azores (15%) trough Programa Operacional Acores 2020, in the scope of the projects "AZORESBIOPORTAL -PORBIOTA": ACORES-01-0145FEDER-000072 and VRPROTO -Virtual Reality PROTOtype: the geological history of "Pedra-que-pica": ACORES-01-0145-FEDER000078. A.U. benefited from additional support by the Jagiellonian University. info:eu-repo/semantics/publishedVersion

Turkonalassus mavi M. Nabozhenko & B. Keskin, sp. n. and Odocnemis rufocruralis M. Nabozhenko & B. Keskin, sp. n., two distinctive darkling beetle species of the tribe Helopini, are described from the Southeastern Anatolia region of Turkey, based on both their external morphology and genital structures. Turkonalassus mavi sp. n. differs from all congeners by the bluish dorsal surface of the body, the pronotum widest before middle, and wide merged baculi of the median lobe of the aedeagus. Odocnemis rufocruralis sp. n. belongs to the praelonga species-group. Odocnemis rufocruralis sp. n. is similar to O. torosica Nabozhenko & Keskin, 2016, O. terminassianae (Nabozhenko, 2011) and O. kakunini Nabozhenko & Keskin, 2016 but differs from all three taxa by the reddish-brown body with red legs, male apical maxillary palpomere wider than in female, elevate and narrowly separate male protrochanters, and the structure of the very long and narrow apical piece of the aedeagus. New data on distribution, bionomics, and trophic relations of several species of Helopini from Turkey are given. Host lichens are determined for nine species. The majority of studied adult beetles feed on lichens from the families Physciaceae and Parmeliaceae. Some examined taxa feed on Cladoniaceae. Feeding on crustose lichens is registered for the first time for Coleoptera, specifically Odocnemis rufocruralis sp. n. was observed to feed on Pertusaria sp. (on Prunus) in Mardin Province., Russian Foundation for Basic Research; RPF [19-54-25001]; TUBITAK 1001 Project [119Z102]; basic research project of Precaspian Institute of Biological Resources of the Daghestan Federal Research Centre of the Russian Academy of Sciences [AAAA-A17-117081640018-5], The study was funded by the Russian Foundation for Basic Research and RPF (project No. 19-54-25001) and TUBITAK 1001 Project No 119Z102, and partly by the basic research project of Precaspian Institute of Biological Resources of the Daghestan Federal Research Centre of the Russian Academy of Sciences, registration number AAAA-A17-117081640018-5. Authors thank Dr Wolfgang Schawaller (SMNS) for loan material, Konstantinos Ntatsopoulos and Loudmila Jelinscaia Lagou (University of Cyprus) for information about habitats and host lichens of Catomus hesperides in Cyprus. We also thank two reviewers, Marcin Jan Kamiski (Purdue University, West Lafaette, USA and Museum and Institute of Zoology of the Polish Academy of Sciences, Warszawa, Poland) and Harold Labrique (Musee des Confluences, Lyon, France) for valuable comments and corrections.

Modern reefs are considered important hot spots of biodiversity, but the analysis of the distribution of the invertebrate fauna across different reefal domains in ancient ecosystems can be challenging, because the fossil record is usually affected by strong taphonomic biases. The lower Eocene coral reef in the well-exposed outcrops of Ramals (Tremp-Graus Basin, southern Pyrenees, northeast Spain), preserve a high diversity of invertebrate groups, including decapod crustaceans. In Ramals the reefal facies belt is formed by a 100–200 m width E–W trending facies belt, including a set of closely spaced reef mounds up to five meters high, surrounded by the skeletal-rich (packstones, rudstones) inter-reef facies. These outcrops also allow the analysis of the fossil-association present in the inner and outer fore-reef facies, which are dominated by skeletal packstones with molluscs, foraminifera, corals, bryozoans, decapod crustaceans, echinoderms and vertebrate fragments (fishes and crocodiles). The reef framework consists of framestones with bioclastic wackestone to packstone matrix, including abundant colonial corals, as well as crustose red algae, encrusting foraminifera (Solenomeris), solitary corals and bryozoans. These reef mounds developed within the mesophotic zone, disturbed by the episodic activity of storm-induced waves. The distribution of decapod crustaceans across the different reefal domains was subjected to extensive paleontological and statistical analyses. The 911 specimens of decapod crustaceans include 41 species belonging to 21 families. Most crustaceans were concentrated in the periphery of the mound reefs and suggest that the core of the reef hosted the highest diversity and abundance of decapod crustaceans. Carpilioids were the most abundant group within the reefal facies belt, Ctenocheles sp. dominated the inner fore-reef areas, and Litoricola macrodactylus pyrenaicus showed preferences for outer fore-reef environments. Decapod crustaceans and associated faunas lived in close association with coral reefs but disappeared from the area after the demise of the reefs due to the increase of the depositional depth and fine terrigenous sedimentary input, illustrating how diversity changes at local scale due to extrinsic factors.

Belguidoum A, Lograda T, Ramdani M. 2021. Diversity and distribution of epiphytic lichens on Cedrus atlantica and Quercus faginea in Mount Babor Forest, Algeria. Biodiversitas 22: 887-899. Information about lichen diversity in Algeria is limited despite their important role as biological indicators of ecosystem health. The aim of the study was to carry out an inventory of epiphytic lichens in the Mount Babor Forest on two types of phorophytes (host trees), i.e., Cedrus atlantica and Quercus faginea, in varying altitudinal gradients and the diameter of host tree. The similarity of the sampled sites was assessed by the Sorensen index (β). Sixty-six species of epiphytic lichens were identified, which belong to 24 families and 38 genera. C. atlantica hosted a higher number of species than Q. faginea. The majority of lichen on C. atlantica belonged to the Parmeliaceae family, whereas those on Q. faginea belonged to the Physciaceae family. Crustose and foliose lichens were the most common species in the study area. The results showed the existence of a distinct relationship between the parameters of the distribution (i.e., tree diameter, elevation) and the specific lichen richness. The greatest number of lichen species (59 species) was observed on large diameter trunks (41-60 cm). Lichen diversity increased along with the increase in altitude. Sorensen’s similarity index revealed the presence of heterogeneity in the community composition of lichen vegetation.

Antarctica presents one of the most severe environmental conditions for life. Under these circumstances, cryptogams are the dominant photosynthetic organisms, among which we find a great richness of lichens. In Antarctic environments, lichens can grow on rocks or in this case on fossil remains, among the few available substrates. In the present contribution, we examined all fossil penguins of the Antarctic collection of the Museo de La Plata, as a significant sample of fossil vertebrates. The selected materials here described come from the Submeseta Formation (Eocene) on Seymour/Marambio Island, located northeast of the Antarctic Peninsula on the Weddell Sea. Given the scarcity of lichenological studies on this island, and the results presented here add significantly to our knowledge of the lichen species that occur there with the recognition of 11 taxa with a crustose morphology (epilithic and endolithic), the sampling of lichens growing on fossil bones acquired an evident importance., Facultad de Ciencias Naturales y Museo

The dispersal ecology of tropical non-vascular epiphytes has rarely been experimentally investigated. We studied epiphyte colonisation on 1 × 1 m polyethene nets placed for four years at seven sites at different elevations in montane forests in the Taita Hills, Kenya. During the first year the nets were also used to measure fog deposition. We predicted that differences in growth conditions would affect colonisation and subsequent growth of non-vascular epiphytes and result in clear differences in epiphyte cover and biomass, and community composition among sites. After four years the nets were taken down for determination of epiphyte cover and biomass. The diversity of established liverworts and macrolichens was also examined. Many liverwort and macrolichen species established diverse communities on the nets placed in the moist upper-montane zone. This was in contrast with the situation in the drier lower-montane zone where only green algae and crustose lichens were able to colonise most nets. Light intensity was an important determinant of epiphyte community composition, with liverworts dominating on nets under closed forest canopies and lichens dominating at more open sites. Atmospheric moisture was also important, with lichens benefiting from abundant fog deposition at open and windy sites. The dry weight of epiphytes (per unit area) on lichen-dominated nets was greater than on liverwort-dominated nets, while the highest cover was generally observed on liverwort-dominated nets. Our results demonstrate that polyethylene nets can be effectively used to study colonisation of non-vascular epiphytes as well as the abiotic and biotic factors controlling epiphyte colonisation and community composition in tropical forests. The liverworts Acanthocoleus chrysophyllus and Diplasiolejeunea kraussiana were new additions to the Kenyan bryophyte flora.

Funding: This work was funded by a NERC iCASE studentship award to HB, PH, JB, and TF (NE/R007233/1). The Royal Botanic Garden Edinburgh acknowledges funding support from the Scottish Government Rural and Environment Sciences and Analytical Services Division (RESAS). This is a contribution to the Scottish Blue Carbon Forum. Anthropogenic climate change presents a major challenge to coastal ecosystems. Mass population declines or geographic shifts in species ranges are expected to occur, potentially leading to wide-scale ecosystem disruption or collapse. This is particularly important for habitat-forming species such as free-living non-geniculate coralline algae that aggregate to form large, structurally complex reef-life ecosystems with high associated biodiversity and carbon sequestration capability. Coralline algal beds have a worldwide distribution, but have recently experienced global declines due to anthropogenic pressures and changing environmental conditions. However, the environmental factors controlling coralline algal bed distribution remain poorly understood, limiting our ability to make adequate assessments of how populations may change in the future. We constructed the first species distribution model for non-geniculate coralline algae (focusing on maerl-forming species but including crustose coralline algae associated with coralline algal beds) and showed that bathymetry, temperature at the seabed and light availability are the primary environmental drivers of present-day non-geniculate coralline algae distribution. Our model also identifies suitable areas for species presence that currently lack records of occurrence. Large-scale spatial declines in coralline algal distribution were observed under all IPCC Representative Concentration Pathways (ranging from 38% decline under RCP 2.6 up to 84% decline under RCP 8.5), with the most rapid rate of decline up to 2050. Refuge populations that may persist under projected climate change were also identified – informing priority areas for future conservation efforts to maximize the long-term survival of this globally important ecosystem. Publisher PDF

International audience; Coral recruitment is important in sustaining coral reef ecosystems and contributing to their recovery after disturbances. Despite widespread acceptance that crustose coralline algae (CCA) positively influence coral recruitment success, especially by enhancing coral settlement and early post-settlement stages, there are no experimental data on the effects of CCA species on late post-settlement survival and growth of corals. This study tested the impact of four common, thick-crusted CCA species from two habitats (exposed and subcryptic) on the survival and growth of two recruit size categories of the coral genus Pocillopora. Coral recruits and CCA were transplanted adjacent to each other using epoxy in Petri dishes directly attached to the reef substratum on the forereef of Moorea (French Polynesia) in a 1-year field experiment. In the subcryptic habitat, survival of small-sized recruits adjacent to subcryptic CCA (0–5%) was lower than adjacent to dead CCA (35%), while in the exposed habitat, survival of small-sized recruits adjacent to exposed CCA (20–25%) was higher than adjacent to dead CCA (5%). None of the CCA species affected the survival of large-sized recruits within exposed or subcryptic habitats. However, the growth of large-sized recruits adjacent to subcryptic CCA was lower than adjacent to dead CCA. Recruits adjacent to exposed CCA died less from competition with turf algae relative to dead CCA, while recruits adjacent to subcryptic CCA frequently died from overgrowth by CCA. These results suggest that, in subcryptic habitats, CCA can reduce the survival and/or growth of coral recruits via direct competitive overgrowth, while in exposed habitats, they can enhance coral recruit survival by alleviating competition with turf algae. Importantly, our study demonstrates that not all CCA species are beneficial to the survival and growth of coral recruits and that there is considerable variability in both the outcome and process of competition between CCA and corals.

The period between seed germination and successful seedling establishment is considered the most vulnerable phase for plant development. To better predict recruitment patterns within plant communities, it is essential to identify the abiotic constrains and biotic interactions that allow for the colonization of substrates by plant species. We evaluated which combination of factors are associated with successful survival and development of seedlings of the seagrass Posidonia oceanica in order to identify the most important microsite features acting together on recruitment success. Our results show that P. oceanica seedlings are rather specific in their environmental requirements during their first 18 months of life, when their development and survival are favored in microsites of consolidated substratum (solid rock, and to a lesser extent P. oceanica matte) covered by macroalgae (mainly crustose algae) and located in sheltered locations (with energy flux values not exceeding 7 × 105 kg s−2 m s−1). After this phase, their probability of surviving becomes more independent from external conditions., Support to L. Pereda-Briones was provided by a PhD Fellowship from the Balearic Islands Government and the European Social Fund. Funds for this work were provided by the Ministry of Science and Innovation (RESIGRASS project, n° ref.: CGL2014-58829-C2-2-R) to FT and JT.

The importance of macro-grazers in controlling macroalgal cover has long been recognized on tropical and temperate reefs, with fishes of primary importance on the former and sea urchins on the latter. However, the functional role of herbivorous urchins and fishes on subtropical marginal reefs remains poorly explored. To evaluate the relative importance of fishes and urchins on marginal subtropical reefs, this study used exclusion devices (excluding all grazers, fishes, or urchins) at two depths (1-2, 5-6 m) on Brazilian rocky reefs. Depth influenced responses within cages, with shallow sites changing from patchy barrens (dominated by crustose coralline algae) to epilithic algae-dominated within exclusion treatments, and sea urchins being the primary driver of benthic dynamics. In deeper water, the growth and senescence cycle of Sargassum species was associated with upwelling events during the spring and summer, and dominated benthic dynamics. No clear influence of herbivorous fishes was detected on benthic cover at either depth, despite biomasses similar to comparable tropical reefs where they do control macroalgal populations. Thus, abiotic factors seem to be a strong driver of benthic dynamics in the studied region, and top-down processes act only at shallow depths. Consequently, despite Brazilian subtropical communities being dominated by tropical species, the ecological drivers of these reefs may be more similar to temperate systems.

The brown alga Lobophora (Dictyotales, Phaeophyceae) is an important macroalga in the North-eastern Atlantic archipelagos (i.e., Macaronesia). Notably in the Canaries it can dominate benthic assemblages. While the genus has been the subject of several ecological studies in the Canaries, no study has yet been conducted to assess species-level diversity of Lobophora in Macaronesia. We reassessed the diversity of Lobophora in Macaronesia, reporting the presence of seven species (L. caboverdeana sp. nov., L. canariensis, L. dagamae sp. nov., L. delicata, L. dispersa, L. littlerorum, and L. schneideri). Lobophora spp. from Macaronesia are morphologically and ecologically distinguishable. In the Canaries, L. schneideri dominates the photophilic assemblages from the intertidal to 20-30 m depth. Lobophora dagamae sp. nov. grows in less illuminated shallow habitats, and replaces L. schneideri from 30 to ~80 m. Lobophora canariensis also has a wide vertical distribution, from the intertidal to deep waters, while L. delicata, L. dispersa and L. littlerorum grow in shallow waters. The dominance of species with an upright habit versus prostrate or crustose species may be mediated by the pressure of herbivores. Four species have an amphi-Atlantic distribution: L. littlerorum, L. canariensis, L. delicata, and L. schneideri. Lobophora schneideri and L. delicata are furthermore distributed in the Mediterranean Sea. By sampling a pivotal region in the Atlantic, this study significantly improves our knowledge of Lobophora biogeography in the Atlantic Ocean. Macaronesia constitutes a species-poor region for Lobophora where no diversification events occurred, and a region of overlap between the Greater Caribbean and the Indo-Pacific.

Crustose coralline algae play a crucial role in the building of reefs in the photic zones of nearshore ecosystems globally, and are highly susceptible to ocean acidification1–3. Nevertheless, the extent to which ecologically important crustose coralline algae can gain tolerance to ocean acidification over multiple generations of exposure is unknown. We show that, while calcification of juvenile crustose coralline algae is initially highly sensitive to ocean acidification, after six generations of exposure the effects of ocean acidification disappear. A reciprocal transplant experiment conducted on the seventh generation, where half of all replicates were interchanged across treatments, confirmed that they had acquired tolerance to low pH and not simply to laboratory conditions. Neither exposure to greater pH variability, nor chemical conditions within the micro-scale calcifying fluid internally, appeared to play a role in fostering this capacity. Our results demonstrate that reef-accreting taxa can gain tolerance to ocean acidification over multiple generations of exposure, suggesting that some of these cosmopolitan species could maintain their critical ecological role in reef formation. Crustose coralline algae help build coral reef structures through calcification, a process threatened under ocean acidification. Juvenile algae were highly sensitive on initial exposure to ocean acidification, but continued exposure over six generations showed a gain of tolerance.

Over the past decades, coralline algae have increasingly been used as archives of palaeoclimate information due to their seasonal growth bands and their vast distribution from high latitudes to the tropics. Traditionally, these reconstructions have been performed mainly on high latitude species, limiting the geographical area of their potential use. Here we assess the use of temperate crustose fossil coralline algae from shallow water habitats for palaeoenvironmental reconstruction to generate records of past climate change. We determine the potential of three different species of coralline algae, Lithothamnion minervae, Lithophyllum stictaeforme and Mesophyllum philippii, with different growth patterns, as archives for pH (δ11B) and temperature (Mg/Ca) reconstruction in the Mediterranean Sea. Mg concentration is driven by temperature but modulated by growth rate, which is controlled by species-specific and intraspecific growth patterns. L. minervae is a good temperature recorder, showing a moderate warming trend in specimens from 11.37 cal ka BP (from 14.2 ± 0.4°C to 14.9 ± 0.15°C) to today. In contrast to Mg, all genera showed consistent values of boron isotopes (δ11B) suggesting a common control on boron incorporation. The recorded δ11B in modern and fossil coralline specimens is in agreement with literature data about early Holocene pH, opening new perspectives of coralline-based, high-resolution pH reconstructions in deep time.

The purpose of this research is to know the type of Lichens in the Gugop Pulo Breuh area, Pulo Aceh District, Aceh Besar. The subjects of this study are all types of Lichens found in the Gugop Pulo Breuh area, Pulo Aceh District, Aceh Besar. This research uses Random sampling technique with combination of line transect and quadratic method. Line transect measuring 100 m x 20 m as many as 3 stations with details of length 100 m and width 20 m. Square plot is determined systematically on each station with a size of 10 m x 10 m, as much as 3 plots to obtain 9 plot of squares. The results of the study found 2300 individu lichens samples covering 10 family of 15 species. Lichens found in the study sites consisted of two types of morphology of the talus namely Crustose and Foliose.

Turbidity associated with elevated suspended sediment concentrations can significantly reduce underwater light availability. Understanding the consequences for sensitive organisms such as corals and crustose coralline algae (CCA), requires an understanding of tolerance levels and the time course of effects. Adult colonies of Acropora millepora and Pocillopora acuta, juvenile P. acuta, and the CCA Porolithon onkodes were exposed to six light treatments of ~0, 0.02, 0.1, 0.4, 1.1 and 4.3 mol photons m−2 d−1, and their physiological responses were monitored over 30 d. Exposure to very low light (-2 d-1) caused tissue discoloration (bleaching) in the corals, and discolouration (and partial mortality) of the CCA, yielding 30 d EI10 thresholds (irradiance which results in a 10% change in colour) of 1.2–1.9 mol photons m−2 d−1. Recent monitoring studies during dredging campaigns on a shallow tropical reef, have shown that underwater light levels very close (~500 m away) from a working dredge routinely fall below this value over 30 d periods, but rarely during the pre-dredging baseline phase. Light reduction alone, therefore, constitutes a clear risk to coral reefs from dredging, although at such close proximity other cause-effect pathways, such as sediment deposition and smothering, are likely to also co-occur.

© The Author(s) 2017., The Antarctic Peninsula has had a globally large increase in mean annual temperature from the 1951 to 1998 followed by a decline that still continues. The challenge is now to unveil whether these recent, complex and somewhat unexpected climatic changes are biologically relevant. We were able to do this by determining the growth of six lichen species on recently deglaciated surfaces over the last 24 years. Between 1991 and 2002, when mean summer temperature (MST) rose by 0.42 °C, five of the six species responded with increased growth. MST declined by 0.58 °C between 2002 and 2015 with most species showing a fall in growth rate and two of which showed a collapse with the loss of large individuals due to a combination of increased snow fall and longer snow cover duration. Increased precipitation can, counter-intuitively, have major negative effects when it falls as snow at cooler temperatures. The recent Antarctic cooling is having easily detectable and deleterious impacts on slow growing and highly stress-tolerant crustose lichens, which are comparable in extent and dynamics, and reverses the gains observed over the previous decades of exceptional warming., This research was supported by grants from the Spanish Ministerio de Economía y Competitividad (CTM2015-64728-C2-1-R, CTM2014-56473-R and CTM2014-50521-R).

Staghorn coral Acropora cervicornis was once spatially dominant on Caribbean reefs but is now threatened throughout its range. In recent years, advancements in ex-situ sexual propagation of Caribbean corals have increased the viability of this management strategy. Thus, improving culture methods for sexually propagated corals is important to bolster the overall coral restoration portfolio and increase genetic diversity in restored populations. In both natural systems and culture scenarios, algae proliferation negatively impacts coral growth and survival. Growing coral with native herbivores may represent a strategy for increased efficiency. We tested A. cervicornis recruits raised in replicate aquaria with identical densities of juvenile Lithopoma americanum or juvenile Batillaria minima snails plus a no-snail control. Each of three replicates per treatment contained tiles with similar numbers of recently settled, visually healthy, A. cervicornis. Tiles were photographed every three weeks for five months and coral growth, survivability, turf algae cover, and crustose coralline algae (CCA) cover were quantified. Labor time for cleaning was carefully recorded for each treatment. Results indicated improved growth and survival when A. cervicornis recruits were raised with either snail species in comparison to a no-herbivore control. Further, including snails decreased labor and eliminated turf algae cover. Interestingly, L. americanum significantly reduced CCA cover relative to the other treatments. We report some of the highest survival rates observed to date for sexually propagated Atlantic corals. Ultimately, results suggest that rearing sexually propagated A. cervicornis with native herbivores could improve the ability to employ these corals in reef restoration.

Crustose coralline algae (CCA) are calcifying red macroalgae that reef build in their own right and perform essential ecosystem functions on coral reefs worldwide. Despite their importance, limited genetic information exists for this algal group. De novo transcriptomes were compiled for four species of common tropical CCA using RNA-seq. Sequencing generated between 66 and 87 million raw reads. Transcriptomes were assembled, redundant contigs removed, and remaining contigs were annotated using Trinotate. Protein orthology analysis was conducted between CCA species and two noncalcifying red algae species from NCBI that have published genomes and transcriptomes, and 978 orthologous protein groups were found to be uniquely shared amongst CCA. Functional enrichment analysis of these ‘CCA-specific’ proteins showed a higher than expected number of sequences from categories relating to regulation of biological and cellular processes, such as actin related proteins, heat shock proteins, and adhesion proteins. Some proteins found within these enriched categories, i.e. actin and GH18, have been implicated in calcification in other taxa, and are thus candidates for involvement in CCA calcification. This study provides the first comprehensive investigation of gene content in these species, offering insights not only into the evolution of coralline algae but also of the Rhodophyta more broadly.

This study evaluates lichens diversity in Abraka and its environs for the period of six months (January – June, 2017). Data were collected by direct observation and transect walks in and around the study area. Photographs were taken to aid identification of the genera encountered with their hosts. Percentage distribution of the species was calculated. The result revealed the percentage occurrence and diversity of three forms of lichens: crustose (57.1%), foliose (28.6%) and leprose (14.3%). The lichen genera recorded with their percentage occurrence included Candelariella (22%), Chaenotheca (2%), Cyphelium (14%), Parmelia (16%), Lecanora (18%), Physcia (18%) and Psilolechia (10%). Monthly distribution showed that month of May had the highest occurrence (30%) of lichens. The weather pattern showed highest temperature in May (30.7°C), highest mean rainfall (442.6mm) and humidity (90.0%) in June. The result showed that the study area has varying lichen diversity which could be employed in bio-monitors of the environment. Keywords: Occurrence, diversity, Lichen, Abraka.

Coral reef decline persists as a global issue with ties to climate change and human footprint. The SeaFlower Biosphere reserve includes some of the most isolated oceanic coral reefs in the Southwestern Caribbean, which provide natural experiments to test global and/or basin-wide factors affecting coral reefs. In this study, we compared coral and other substrate cover (algae, cyanobacteria, and octocorals), along population densities of keystone urchin species from two atolls (Serrana and Roncador Banks), during 1995, 2003, and 2015/2016. We also surveyed benthic foraminifera as a water quality proxy for coral growth in the last period. A steady reduction in coral cover was clearly observed at Roncador’s lagoon, but not at Serrana’s reefs, with significant differences between 1995 and 2015/2016. Percent cover of fleshy algae decreased significantly also at Roncador between 1995 and 2003 but did not change notably from 1995 to 2016 at Serrana. However, both Banks exhibited a loss in crustose coralline algae from 2003 to 2015/2016. Likewise, a reduction in bottom complexity, measured as bottom rugosity, was evident between 1995 and 2003. Roncador Bank had unprecedented high octocoral densities, which increased almost threefold from 2003 to 2015. In contrast, urchin densities were low in Roncador; only Diadema antillarum increased from 2003 to 2016 in Serrana Bank. The Foraminifera in Reef Assessment and Monitoring (FORAM) Index (FI) in the two Banks was below the range expected for healthy coral reefs. Although both Banks follow a reduction in CCA and CA cover, Roncador Bank also faces an alarming decline in coral cover, urchins and bottom complexity (rugosity) in contrast to increases in octocoral densities and potential loss of resilience and eutrophication suggested by the FI index. These unexpected findings led us to consider and discuss potential outcomes, where these reefs deteriorate (i.e., erode and drown) providing ideal conditions for octocoral growth. Hence, it is of utmost urgency to start monitoring reef budgets, octocorals and nutrient sources.

Lichens are traditionally divided into types such as "crustose", "foliose" and "fruticose", with different shapes and heights. Substrate, temperature and water are thought to affect lichen height, but there are few studies regarding tropical paramo lichens. Along 2015 I measured those variables in the terricolous lichens of the Cerro Buena Vista, paramo (Costa Rica, 9°33' N & 83°45' W). The measurements were taken inside the lichens and in the substrate under them, in 61 randomly located quadrats (50 x 50 cm). Lichens grew taller on (1) warmer ground, (2) wetter ground, (3) the moister Caribbean slope, and (4) the season with heavier rainfall, as expected. Apparently, atmospheric factors are more important than substrate in the determination of temperature, relative humidity and growth of lichens. Physiologically available water seems to be the main determinant of lichen vertical growth in the Buena Vista paramo. Los líquenes se dividen tradicionalmente en morfotipos como "crustoso", "folioso" y "fruticoso", con diferentes formas y alturas. Se cree que el sustrato, la temperatura y el agua afectan la altura de los líquenes, pero existen pocos estudios con respecto a los líquenes tropicales. A lo largo del 2015, medí esas variables en los líquenes del suelo en el páramo de Cerro Buena Vista (Costa Rica, 9 ° 33'N; 83 ° 45'W). Las medidas se tomaron dentro de los líquenes y en el sustrato debajo de ellos, en 61 cuadrantes ubicados al azar (50 x 50 cm). Los líquenes fueron más altos en (1) suelo más cálido, (2) suelo más húmedo, (3) la pendiente del Caribe, que es más húmeda y (4) la temporada con lluvias más intensas, como se esperaba. Aparentemente, los factores atmosféricos son más importantes que el sustrato en la determinación de la temperatura, la humedad relativa y el crecimiento de los líquenes. El agua fisiológicamente disponible parece ser el principal determinante del crecimiento vertical de los líquenes en el páramo del Cerro Buena Vista. &nbsp