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21. The hydrocarbon pollution crisis: Harnessing the earth hydrocarbon‐degrading microbiome.

Author

Duran, Robert and Cravo‐Laureau, Cristiana

Subjects
*MICROBIAL ecology, *IN situ bioremediation, *BIOTIC communities, *EARTH system science, *BP Deepwater Horizon Explosion & Oil Spill, 2010, *POLLUTION, *HYDROCARBONS
Abstract

The article discusses the ongoing issue of hydrocarbon pollution and the need to harness the hydrocarbon-degrading microbiome to mitigate its impact on the environment. It highlights the various sources of hydrocarbon pollution, including industrial and petroleum activities, wildfires, and natural sources. The article also explores the microbial communities that inhabit hydrocarbon-contaminated sites and their role in hydrocarbon degradation. It discusses the challenges and potential of using synthetic biology approaches to design engineered microbial communities for bioremediation. The article emphasizes the importance of monitoring methods and holistic approaches for evaluating the effectiveness of bioremediation treatments. The research work of the authors was funded by various projects, and they declare no competing interests. [Extracted from the article]

Published
2024
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22. Nitrogen and sulfur for phosphorus: Lipidome adaptation of anaerobic sulfate-reducing bacteria in phosphorus-deprived conditions.

Author

Su Ding, Grossi, Vincent, Hopmans, Ellen C., Bale, Nicole J., Cravo-Laureau, Cristiana, and Damsté, Jaap S. Sinninghe

Subjects
SULFATE-reducing bacteria, ANAEROBIC bacteria, ETHER lipids, GLYCERYL ethers, SULFUR, PERMEATION tubes
Abstract

Understanding how microbial lipidomes adapt to environmental and nutrient stress is crucial for comprehending microbial survival and functionality. Certain anaerobic bacteria can synthesize glycerolipids with ether/ester bonds, yet the complexities of their lipidome remodeling under varying physicochemical and nutritional conditions remain largely unexplored. In this study, we thoroughly examined the lipidome adaptations of Desulfatibacillum alkenivorans strain PF2803T, a mesophilic anaerobic sulfate-reducing bacterium known for its high proportions of alkylglycerol ether lipids in its membrane, under various cultivation conditions including temperature, pH, salinity, and ammonium and phosphorous concentrations. Employing an extensive analytical and computational lipidomic methodology, we identified an assemblage of nearly 400 distinct lipids, including a range of glycerol ether/ester lipids with various polar head groups. Information theory-based analysis revealed that temperature fluctuations and phosphate scarcity profoundly influenced the lipidome's composition, leading to an enhanced diversity and specificity of novel lipids. Notably, phosphorous limitation led to the biosynthesis of novel glucuronosylglycerols and sulfur-containing aminolipids, termed butyramide cysteine glycerols, featuring various ether/ester bonds. This suggests a novel adaptive strategy for anaerobic heterotrophs to thrive under phosphorus-depleted conditions, characterized by a diverse array of nitrogen-and sulfur-containing polar head groups, moving beyond a reliance on conventional nonphospholipid types. [ABSTRACT FROM AUTHOR]

Published
2024
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23. Mono- to tetra-alkyl ether cardiolipins in a mesophilic, sulfate-reducing bacterium identified by UHPLC-HRMSn: a novel class of membrane lipids.

Author

Hopmans, Ellen C., Grossi, Vincent, Sahonero-Canavesi, Diana X., Bale, Nicole J., Cravo-Laureau, Cristiana, and Damsté, Jaap S. Sinninghe

Subjects
MEMBRANE lipids, GLYCERYL ethers, ETHER lipids, SULFATE-reducing bacteria, TANDEM mass spectrometry, ESCHERICHIA coli, PHOSPHOLIPIDS
Abstract

The composition of membrane lipids varies in a number of ways as adjustment to growth conditions. Variations in head group composition and carbon skeleton and degree of unsaturation of glycerol-bound acyl or alkyl chains results in a high structural complexity of the lipidome of bacterial cells. We studied the lipidome of the mesophilic, sulfate-reducing bacterium, Desulfatibacillum alkenivorans strain PF2803T by ultra-high-pressure liquid chromatography coupled with high-resolution tandem mass spectrometry (UHPLC-HRMSn). This anaerobic bacterium has been previously shown to produce high amounts of mono-and di-alkyl glycerol ethers as core membrane lipids. Our analyses revealed that these core lipids occur with phosphatidylethanomamine (PE) and phosphatidylglycerol (PG) head groups, representing each approximately one third of the phospholipids. The third class was a novel group of phospholipids, i.e., cardiolipins (CDLs) containing one (monoether/triester) to four (tetraether) ether-linked saturated straight-chain or methyl-branched alkyl chains. Tetraether CDLs have been shown to occur in archaea (with isoprenoid alkyl chains) but have not been previously reported in the bacterial Domain. Structurally related CDLs with one or two alkyl/acyl chains missing, so-called monolyso-and dilyso-CDLs, were also observed. The potential biosynthetic pathway of these novel CDLs was investigated by examining the genome of D. alkenivorans. Three CDL synthases were identified; one catalyzes the condensation of two PGs, the other two are probably involved in the condensation of a PE with a PG. A heterologous gene expression experiment showed the in vivo production of dialkylglycerols upon anaerobic expression of the glycerol ester reductase enzyme of D. alkenivorans in E. coli. Reduction of the ester bonds probably occurs first at the sn-1 and subsequently at the sn-2 position after the formation of PEs and PGs. [ABSTRACT FROM AUTHOR]

Published
2024
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30. Membres du comité d'organisation scientifique

Author

Barthelmebs, Lise, Bonnineau, Chloé, Brandt, Kristian K., Bundgaard Bech, Tina, Cassio, Fernanda, Cébron, Aurélie, Corcoll, Natàlia, Coulon, Frédéric, Cravo-Laureau, Cristiana, de Clerck, Caroline, Guasch, Helena, Hanano, Abdulsamie, Hellal, Jennifer, Hery, Marina, Karpouzas, Dimitrios, Kim Tiam, Sandra, Leboulanger, C, Martin-Laurent, Fabrice, Martins, Jean, Morin, Soizic, Pavloudi, Christina, Schmitt-Jansen, Mechthild, Tardy, Vincent, Thouand, Gerald, Vasquez, Marlen, Vuilleumier, Stéphane, Wick, Lukas Y., Yergeau, Étienne, and EL Mjiyad, Noureddine

Subjects
[SDV] Life Sciences [q-bio]
Published
2022

33. NEW INSIGHTS INTO MICROBIAL WAX ESTER BIOSYNTHESIS, NATURAL OCCURRENCE AND ADAPTIVE ROLE

Author

Grossi, Vincent, Antheaume, Ingrid, Ariztegui, Daniel, Borrel, Guillaume, Cravo-Laureau, Cristiana, Cuny, Philippe, Hugoni, Mylène, Militon, Cécile, Sala, David, Sylvi, Lea, Thomas, Camille, Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS), Université de Genève = University of Geneva (UNIGE), Institut Pasteur [Paris] (IP), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Microbiologie, adaptation et pathogénie (MAP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), and GROSSI, Vincent

Subjects
[SDE] Environmental Sciences, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, [SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry, [SDU.STU.GC] Sciences of the Universe [physics]/Earth Sciences/Geochemistry, [SDE]Environmental Sciences, [SDV.EE.ECO] Life Sciences [q-bio]/Ecology, environment/Ecosystems, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces, environment
Abstract

International audience

Published
2021

34. Vertical organization of microbial communities in Salineta hypersaline wetland, Spain.

Author

Bourhane, Zeina, Cagnon, Christine, Castañeda, Carmen, Rodríguez-Ochoa, Rafael, Álvaro-Fuentes, Jorge, Cravo-Laureau, Cristiana, and Duran, Robert

Abstract

Microbial communities inhabiting hypersaline wetlands, well adapted to the environmental fluctuations due to flooding and desiccation events, play a key role in the biogeochemical cycles, ensuring ecosystem service. To better understand the ecosystem functioning, we studied soil microbial communities of Salineta wetland (NE Spain) in dry and wet seasons in three different landscape stations representing situations characteristic of ephemeral saline lakes: S1 soil usually submerged, S2 soil intermittently flooded, and S3 soil with halophytes. Microbial community composition was determined according to different redox layers by 16S rRNA gene barcoding. We observed reversed redox gradient, negative at the surface and positive in depth, which was identified by PERMANOVA as the main factor explaining microbial distribution. The Pseudomonadota, Gemmatimonadota, Bacteroidota, Desulfobacterota, and Halobacteriota phyla were dominant in all stations. Linear discriminant analysis effect size (LEfSe) revealed that the upper soil surface layer was characterized by the predominance of operational taxonomic units (OTUs) affiliated to strictly or facultative anaerobic halophilic bacteria and archaea while the subsurface soil layer was dominated by an OTU affiliated to Roseibaca, an aerobic alkali-tolerant bacterium. In addition, the potential functional capabilities, inferred by PICRUSt2 analysis, involved in carbon, nitrogen, and sulfur cycles were similar in all samples, irrespective of the redox stratification, suggesting functional redundancy. Our findings show microbial community changes according to water flooding conditions, which represent useful information for biomonitoring and management of these wetlands whose extreme aridity and salinity conditions are exposed to irreversible changes due to human activities. [ABSTRACT FROM AUTHOR]

Published
2023
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35. Low-cost gel-filled microwell array device for screening marine microbial consortium.

Author

Duran, Clelia, Shiyi Zhang, Chongyang Yang, Falco, Maria Lorena, Cravo-Laureau, Cristiana, Chiho Suzuki-Minakuchi, Hideaki Nojiri, Duran, Robert, and Fumihiro Sassa

Subjects
MICROBIAL cultures, SEALING devices, BACTERIAL cultures, ENVIRONMENTAL sampling, MARINE microorganisms, BASE isolation system
Abstract

In order to exploit the microbes present in the environment for their beneficial resources, effective selection and isolation of microbes from environmental samples is essential. In this study, we fabricated a gel-filled microwell array device using resin for microbial culture. The device has an integrated sealing mechanism that enables high-density isolation based on the culture of microorganisms; the device is easily manageable, facilitating observation using bright-field microscopy. This low-cost device made from polymethyl methacrylate (PMMA)/polyethylene terephthalate (PET) has 900 microwells (600 μm × 600 μm × 700 μm) filled with a microbial culture gel medium in glass slide-sized plates. It also has grooves for maintaining the moisture content in the micro-gel. The partition wall between the wells has a highly hydrophobic coating to inhibit microbial migration to neighboring wells and to prevent exchange of liquid substances. After being hermetically sealed, the device can maintain moisture in the agarose gels for 7 days. In the bacterial culture experiment using this device, environmental bacteria were isolated and cultured in individual wells after 3 days. Moreover, the isolated bacteria were then picked up from wells and re-cultured. This device is effective for the first screening of microorganisms from marine environmental samples. [ABSTRACT FROM AUTHOR]

Published
2022
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38. Etude in vitro de l'impact de sediments artificiellement contamines par l'anthracene: effets sur les bacteries indigenes et les nematodes libres marins

Author

Said, Olfa Ben, Louati, Hela, Soltani, Amel, Mahmoudi, Ezzeddine, Cravo-Laureau, Cristiana, Pringault, Olivier, Duran, Robert, and Aissa, Patricia

Subjects
Nematoda -- Environmental aspects, Bioremediation -- Methods, Engineering and manufacturing industries
Abstract

This study evaluates the in vitro impact of three bioremediation techniques: biostimulation, bioaugmentation, and a combination of biostimulation and bioaugmentation on microflora and nematofauna after an artificial contamination of lagoon sediments by anthracene. This sediment contamination tends to reduce the average load in aerobic heterotrophic bacteria in the water column, at the sediment interface and at the same time induces a highly significant decrease in the average densities of nematodes in all microcosms contaminated by this pollutant. After inoculation with the Staphylococcus sp. bacterial strain, the increase in bacterial load was significant (p < 0.05) in the three compartments of anthracene-contaminated microcosms with relation to the controls. The addition of nitrates and phosphates to the contaminated microcosms generated a highly significant increase in the average concentration of free-living nematodes with relation to the controls. Key words: biostimulation, bioaugmentation, anthracene, bacteria, free-living marine nematodes. La presente etude se propose d'evaluer, in vitro, l'impact de trois techniques de bioremediation a savoir la biostimulation, la bioaugmentation et la combinaison de la biostimulation et de la bioaugmentation sur la microflore et la nematofaune apres une contamination artificielle des sediments lagunaires par l' anthracene. Cette contamination sedimentaire, tend a provoquer une reduction de la charge moyenne des bacteries heterotrophes aerobies dans la colonne d' eau, a l' interface et dans le sediment et en parallele une diminution hautement significative des densites moyennes des nematodes dans tous les microcosmes contamines par ce polluant. Apres inoculation de la souche bacterienne Staphylococcus sp., l'augmentation de la charge bacterienne a ete significative (p < 0,05) au niveau des trois compartiments dans les microcosmes contamines par l'anthracene par rapport aux temoins. L'ajout des nitrates et des phosphates aux microcosmes contamines a entraine, par rapport aux temoins, une augmentation tres significative des effectifs moyens de nematodes libres. Mots-cles : anthracene, bacteries, bioaugmentation, biostimulation, nematodes libres marins. [Journal translation], Introduction La presence dans les sediments marins de micropolluants ubiquistes et persistants comme les hydrocarbures aromatiques polycycliques (HAP) posent de reels problemes environnementaux (Choi et Oris 2003). En effet, leur [...]

Published
2012
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42. Anaerobic 1-alkene metabolism by the alkane- and alkene-degrading sulfate reducer Desulfatibacillum aliphaticivorans strain CV2803

Author

Grossi, Vincent, Cravo-Laureau, Cristiana, Meou, Alain, Raphel, Danielle, Garzino, Frederic, and Hirschler-Rea, Agnes

Subjects
Cell metabolism -- Research, Olefins -- Research, Olefins -- Chemical properties, Olefins -- Physiological aspects, Anaerobic bacteria -- Research, Anaerobic bacteria -- Physiological aspects, Biological sciences
Abstract

The alkane- and alkene-degrading, marine sulfate-reducing bacterium Desulfatibacillum aliphaticivorans strain CV2803 is examined for its 1-alkene metabolism. The pathways have indicated that diverse initial reactions of 1-alkene activation have occurred simultaneously in the same strain of sulfate-reducing bacterium.

Published
2007

46. Microbial Ecotoxicology

Author

Cravo-Laureau, Cristiana, Cagnon, Christine, Lauga, Béatrice, Duran, Robert, Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Cravo-Laureau, C., Cagnon, Duran, R., Lauga, and B.

Subjects
[SDV.EE]Life Sciences [q-bio]/Ecology, environment, business.industry, Scale (chemistry), Environmental resource management, technology, industry, and agriculture, Natural environment, Chemical pollution, 02 engineering and technology, 010501 environmental sciences, 15. Life on land, 021001 nanoscience & nanotechnology, 01 natural sciences, Ecological indicator, 13. Climate action, Ecotoxicology, Environmental science, Ecosystem, 0210 nano-technology, Temporal scales, business, 0105 earth and related environmental sciences, Environmental risk assessment
Abstract

‘Ecosystem recovery’ is a concept that emerged from the need to preserve our environment against increasing contamination from human activity. However, ecological indicators of ecosystem recovery remain scarce, and it is still difficult to assess recovery of ecological processes at relevant spatial and temporal scales. Microbial communities hold key relevance as indicators of ecosystem recovery as they are ubiquitous among diverse ecosystems, respond rapidly to environmental changes, and support many ecosystem functions and services through taxonomic and functional biodiversity. This chapter summarizes the state-of-the-art in knowledge on the processes driving the structural and functional recovery of phototroph and heterotroph microorganisms following chemical pollution. It covers several successful case studies providing proof of principle for the relevance of using microorganisms in recovery studies in various ecosystems such as soil, freshwater and seawater. Questions remain for microbial ecotoxicologists to fully understand and predict how structural and functional recovery observed at microbial scale can reflect the recovery of an ecosystem. Moreover, new standards and norms taking into account recent advances in microbial ecotoxicology are now necessary in order to inform legislators and policymakers on the importance of considering microorganisms in environmental risk assessment, including ecological recovery monitoring.

Published
2017
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47. Sessile aerobic microbiota from the wall of the national museum, Brazil: characterization and quantification

Author

Dias, Diogo, Vasconcelos, Ulrich, Lutterbach, Marcia Teresa, Cravo-Laureau, Cristiana, Camporese Sérvulo, Eliana Flávia, Equipe Environnement et Microbiologie (EEM ), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Universidade Federal do Estado do Rio de Janeiro (UNIRIO)

Subjects
[SDV]Life Sciences [q-bio], [CHIM]Chemical Sciences, Jardim da Princesa, biodeterioration, biofilm, cultural heritage
Abstract

International audience; The interest in preserving cultural heritage sites and artifacts has driven the development of addnl. measures to protect them from deterioration, which increases over time. The Garden of the Princess (Jardim da Princesa) located at the National Museum in Rio de Janeiro, Brazil, was the main site under evaluation in this work. Microbial colonization of the garden's walls was evaluated at two different areas by cultivation-​based approach using specific media for fungi and bacteria, including total heterotrophic bacteria, acid and iron-​producing bacteria. Results demonstrated that the higher cell d. was detected in the sample from the higher humidity despite the limited humidity of the walls. Mol. identification of isolates revealed that Arthrobacter was the main bacterial genus in the biofilm, even though the others predominant genera have longer survival times during starvation and higher resistance to desiccation. Sessile fungi, despite fewer in no., were also quite diverse. In conclusion, even found in such hostile environment an interesting microbial diversity was obsd. in this study including four genera not yet reported as biodeterioration agents in heritage sites: bacteria Ensifer, Enterobacter and Srenotrophomonas and the fungus Hypocreacea.

Published
2016

48. Environmental microbiology as a mosaic of explored ecosystems and issues

Author

Faure, Denis, Bonin, Patricia, Duran, Robert, Amato, Pierre, Arsene-Ploetze, Florence, Auguet, J.C., Legrand, Bernard, Bertin, P.N., Bettarel, Y., Bigot-Clivot, A, Blot, N, BLOUIN, Manuel, Bormans, Myriam, Bouvy, M, Bruneel, O, Cébron, A, Christaki, U, Couée, Ivan, Cravo-Laureau, Cristiana, Danger, M, de Lorgeril, J, Desdevises, Y, Dessaux, Y, Destoumieux-Garzón, D, Duprat, E, Erauso, Gaël, Haichar, Feth El Zahar, Fouilland, E, Francez, Andre-Jean, Fromin, N, Geffard, Alain, Ghiglione, J.F., Grossi, Vincent, Guizien, K, Hubas, C, Huguet, A, Jardillier, L, Jouquet, P, Joux, F, Kaisermann, A, Kaltz, O, Lata, J.C., Lecerf, A, Leyval, C, Luis, Patricia, Masseret, E, Niboyet, A, Normand, Philippe, Plewniak, F, Poly, Franck, Prado, S, Quaiser, Achim, Ratet, P, Richaume, Agnès, Rolland, J.L., Rols, J.L., Rontani, JF, Rossi, F, Sablé, Sophie, Sivadon, P, Soudant, Philippe, Tamburini, C, Tribollet, Aline, Valiente Moro, C, Van Wambeke, France, Vandenkoornhuyse , Philippe, Vuilleumier, Stéphane, Vandenkoornhuyse, Philippe, Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Université de Toulon (UTLN), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut de Chimie de Clermont-Ferrand (ICCF), SIGMA Clermont (SIGMA Clermont)-Institut de Chimie du CNRS (INC)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), Génétique moléculaire, génomique, microbiologie (GMGM), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Ecologie des systèmes marins côtiers (Ecosym), Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS), Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM), Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Ecogéochimie des environnements benthiques (LECOB), Observatoire océanologique de Banyuls (OOB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), AgroParisTech, Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), LIttoral ENvironnement et Sociétés (LIENSs), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Biogéochimie-Traceurs-Paléoclimat (BTP), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), CNRS Mission pour l'Interdisciplinarite, Incentive Action Ecosphere Continentale et Cotiere (EC2CO), Ecosphère Continentale et Côtière (EC2CO), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut Ecologie et Environnement (INEE), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement [Lyon] (LGL-TPE), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), LIttoral ENvironnement et Sociétés - UMR 7266 (LIENSs), Institut national des sciences de l'Univers (INSU - CNRS)-La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Toulon (UTLN), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Ecole Nationale Vétérinaire de Lyon (ENVL), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon), Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), LIttoral ENvironnement et Sociétés - UMRi 7266 (LIENSs), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Diderot - Paris 7 (UPD7)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Inst Sci Vegetal, Centre National de la Recherche Scientifique (CNRS), Université de Pau et des Pays de l'Adour (UPPA)-Centre National de la Recherche Scientifique (CNRS), Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Sigma CLERMONT (Sigma CLERMONT)-Centre National de la Recherche Scientifique (CNRS), Université Louis Pasteur - Strasbourg I-Centre National de la Recherche Scientifique (CNRS), Institut d’Électronique, de Microélectronique et de Nanotechnologie (IEMN) - UMR 8520 (IEMN), Centre National de la Recherche Scientifique (CNRS)-Université de Lille-Université Polytechnique Hauts-de-France (UPHF)-Ecole Centrale de Lille-Université Polytechnique Hauts-de-France (UPHF)-Institut supérieur de l'électronique et du numérique (ISEN), Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université Montpellier 1 (UM1), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Vétérinaire de Lyon (ENVL)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Institut d'écologie et des sciences de l'environnement de Paris (IEES), Centre National de la Recherche Scientifique (CNRS)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Recherche Agronomique (INRA), Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Muséum national d'Histoire naturelle (MNHN), Centre National de la Recherche Scientifique (CNRS)-Université de Toulon (UTLN)-Aix Marseille Université (AMU)-Institut de Recherche pour le Développement (IRD), Institut de Chimie de Clermont-Ferrand - Clermont Auvergne (ICCF), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne (UCA)-Sigma CLERMONT (Sigma CLERMONT), Ecole Centrale de Lille-Institut supérieur de l'électronique et du numérique (ISEN)-Université de Valenciennes et du Hainaut-Cambrésis (UVHC)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Université Polytechnique Hauts-de-France (UPHF), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut d'écologie et des sciences de l'environnement de Paris (IEES (UMR_7618 / UMR_D_242 / UMR_A_1392 / UM_113) ), Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut de Recherche pour le Développement (IRD)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire Européen de la Mer (IUEM), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Brest (UBO)

Subjects
Health, Toxicology and Mutagenesis, Ecology (disciplines), Mosaic (geodemography), Biology, Microbial ecology, Environmental Chemistry, Animals, Humans, Ecosystem, 14. Life underwater, Phylogeny, Bacteria, Environmental microbiology, Ecology, Microbial ecosystems, ACL, Critical zone, General Medicine, 15. Life on land, biology.organism_classification, Pollution, Archaea, [SDE.ES]Environmental Sciences/Environmental and Society, 13. Climate action, Viruses, Microbial Interactions, Environmental Pollutants, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, human activities
Abstract

International audience; Microbes are phylogenetically (Archaea, Bacteria, Eukarya, and viruses) and functionally diverse. They colonize highly varied environments and rapidly respond to and evolve as a response to local and global environmental changes, including those induced by pollutants resulting from human activities. This review exemplifies the Microbial Ecology EC2CO consortium’s efforts to explore the biology, ecology, diversity, and roles of microbes in aquatic and continental ecosystems.

Published
2015
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49. Mono- and Dialkyl Glycerol Ether Lipids in Anaerobic Bacteria: Biosynthetic Insights from the Mesophilic Sulfate Reducer Desulfatibacillum alkenivorans PF2803 T

Author

Grossi, Vincent, Mollex, Damien, Vincon-Laugier, Arnauld, Hakil, Florence, Pacton, Muriel, Cravo-Laureau, Cristiana, Parales, R., Laboratoire de MicrobiologiE de Géochimie et d'Ecologie Marines (LMGEM), Université de la Méditerranée - Aix-Marseille 2-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), ANR-12-BSV7-0003,BAGEL,Production bactérienne d'éthers lipidiques : Implications biogéochimiques, (paléo)environnementales et évolutives(2012), Centre National de la Recherche Scientifique (CNRS)-Université de la Méditerranée - Aix-Marseille 2, Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement [Lyon] (LGL-TPE), École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)

Subjects
Ecology, Glyceride, Glyceryl Ethers, Lipid metabolism, Ether, Biology, Applied Microbiology and Biotechnology, chemistry.chemical_compound, chemistry, Biochemistry, Biosynthesis, [SDE]Environmental Sciences, Glycerol, Environmental Microbiology, Organic chemistry, Anaerobic bacteria, Energy source, Food Science, Biotechnology
Abstract

Bacterial glycerol ether lipids (alkylglycerols) have received increasing attention during the last decades, notably due to their potential role in cell resistance or adaptation to adverse environmental conditions. Major uncertainties remain, however, regarding the origin, biosynthesis, and modes of formation of these uncommon bacterial lipids. We report here the preponderance of monoalkyl- and dialkylglycerols (1- O -alkyl-, 2- O -alkyl-, and 1,2- O -dialkylglycerols) among the hydrolyzed lipids of the marine mesophilic sulfate-reducing proteobacterium Desulfatibacillum alkenivorans PF2803 T grown on n -alkenes (pentadec-1-ene or hexadec-1-ene) as the sole carbon and energy source. Alkylglycerols account for one-third to two-thirds of the total cellular lipids (alkylglycerols plus acylglycerols), depending on the growth substrate, with dialkylglycerols contributing to one-fifth to two-fifths of the total ether lipids. The carbon chain distribution of the lipids of D. alkenivorans also depends on that of the substrate, but the chain length and methyl-branching patterns of fatty acids and monoalkyl- and dialkylglycerols are systematically congruent, supporting the idea of a biosynthetic link between the three classes of compounds. Vinyl ethers (1-alken-1′-yl-glycerols, known as plasmalogens) are not detected among the lipids of strain PF2803 T . Cultures grown on different (per)deuterated n -alkene, n -alkanol, and n -fatty acid substrates further demonstrate that saturated alkylglycerols are not formed via the reduction of hypothetic alken-1′-yl intermediates. Our results support an unprecedented biosynthetic pathway to monoalkyl/monoacyl- and dialkylglycerols in anaerobic bacteria and suggest that n -alkyl compounds present in the environment can serve as the substrates for supplying the building blocks of ether phospholipids of heterotrophic bacteria.

Published
2015
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50. Mono- and Dialkyl Glycerol Ether Lipids in Anaerobic Bacteria: Biosynthetic Insights from the Mesophilic Sulfate Reducer Desulfatibacillum alkenivorans PF2803(T) (vol 81, pg 3157, 2015)

Author

Grossi, Vincent, Mollex, Damien, Vincon-Laugier, Arnauld, Hakil, Florence, Pacton, Muriel, Cravo-Laureau, Cristiana, Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement (LGL-TPE), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Université Jean Monnet - Saint-Étienne (UJM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Géologie de Lyon - Terre, Planètes, Environnement [Lyon] (LGL-TPE), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)

Subjects
[SDU.STU]Sciences of the Universe [physics]/Earth Sciences, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2015
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