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1. Neotropical freshwater fisheries : A dataset of occurrence and abundance of freshwater fishes in the Neotropics

Author

Lívia Helena Tonella, Renata Ruaro, Vanessa Salete Daga, Diego Azevedo Zoccal Garcia, Oscar Barroso Vitorino, Tatiana Lobato‐de Magalhães, Roberto Esser dos Reis, Fabio Di Dario, Ana Cristina Petry, Michael Maia Mincarone, Luciano Fogaça de Assis Montag, Paulo Santos Pompeu, Adonias Aphoena Martins Teixeira, Alberto Luciano Carmassi, Alberto J. Sánchez, Alejandro Giraldo Pérez, Alessandra Bono, Aléssio Datovo, Alexander S. Flecker, Alexandra Sanches, Alexandre Lima Godinho, Alexandre Matthiensen, Alexandre Peressin, Alexandre Wagner Silva Hilsdorf, Alexéia Barufatti, Alice Hirschmann, Aline Jung, Allan K. Cruz‐Ramírez, Alline Braga Silva, Almir Manoel Cunico, Amanda Saldanha Barbosa, Amauri de Castro Barradas, Ana Carolina Lacerda Rêgo, Ana Clara Sampaio Franco, Ana Paula Lula Costa, Ana Paula Vidotto‐Magnoni, Anderson Ferreira, Anderson Kassner Filho, André Batista Nobile, André Lincoln Barroso Magalhães, André Teixeira da Silva, Andréa Bialetzki, Andréa Cristina dos Santos Maroclo Gomes, Andrezza Bellotto Nobre, Armando Cesar Rodrigues Casimiro, Arturo Angulo Sibaja, Arthur Alexandre Capelli dos Santos, Átila Rodrigues de Araújo, Augusto Frota, Bárbara Angélio Quirino, Beatriz Moreira Ferreira, Bianca Weiss Albuquerque, Bruna Arbo Meneses, Brunno Tolentino Oliveira, Bruno Augusto Torres Parahyba Campos, Bruno Bastos Gonçalves, Bruno Busnello Kubiak, Bruno da Silveira Prudente, Bruno Gorini de Araujo Passos Pacheco, Bruno Kazuo Nakagawa, Bruno Tayar Marinho do Nascimento, Calebe Maia, Camila Cantagallo Devids, Carla Ferreira Rezende, Carla Muñoz‐Mendoza, Carlos A. Peres, Carlos Alberto de Sousa Rodrigues Filho, Carlos Alberto Santos de Lucena, Carlos Alexandre Fernandes, Carlos Benhur Kasper, Carlos Donascimiento, Carmino Emidio, Carolina Carrillo‐Moreno, Carolina Machado, Carolina Pera, Caroline Hartmann, Catherine M. Pringle, Cecília Gontijo Leal, Céline Jézéquel, Chris Harrod, Clarissa Alves da Rosa, Claudio Quezada‐Romegialli, Crisla Maciel Pott, Crislei Larentis, Cristiane A. S. Nascimento, Cristina da Silva Gonçalves, Cristina Jaques da Cunha, Cristina Moreira Pisicchio, Daniel Cardoso de Carvalho, Daniel Galiano, Daniel Gomez‐Uchida, Daniel Oliveira Santana, Daniel Salas Johnson, Danielle Katharine Petsch, Danielly Torres Hashiguti de Freitas, Dayani Bailly, Débora Ferreira Machado, Débora Reis de Carvalho, Dhyego Hamilton Topan, Diego Cañas‐Rojas, Diego da Silva, Diogo Freitas‐Souza, Dilermando Pereira Lima‐Júnior, Diovani Piscor, Djalma Pereira Moraes, Douglas Viana, Dyego Leonardo Ferraz Caetano, Éder André Gubiani, Edson K. Okada, Eduardo Cazuni do Amaral, Eduardo Meneguzzi Brambilla, Eduardo Ribeiro Cunha, Elaine Antoniassi Luiz Kashiwaqui, Elise Amador Rocha, Elisete Ana Barp, Elmary da Costa Fraga, Elvira D'Bastiani, Eugenia Zandonà, Eurizângela Pereira Dary, Evanilde Benedito, Everardo Barba‐Macías, Evelyn Vanessa Calvache Uvidia, Fabiana Luques Fonseca, Fabiane Silva Ferreira, Fábio Lima, Fábio Maffei, Fábio Porto‐Foresti, Fabrício Barreto Teresa, Fabrício de Andrade Frehse, Fagner Júnior M. Oliveira, Felipe Pessoa da Silva, Felipe Pontieri de Lima, Fernanda Dotti do Prado, Fernando Camargo Jerep, Fernando Emmanuel Gonçalves Vieira, Fernando Gertum Becker, Fernando Rogério de Carvalho, Flávio Kulaif Ubaid, Francisco Keilo Teixeira, Francisco Provenzano Rizzi, Francisco Severo‐Neto, Francisco Villamarín, Franco Teixeira de Mello, Friedrich Wolfgang Keppeler, Gabriel de Avila Batista, Gabriel de Menezes Yazbeck, Giancarlo Tesitore, Gilberto Nepomuceno Salvador, Gita Juan Soteroruda Brito, Giulianna Rondineli Carmassi, Gregório Kurchevski, Guillermo Goyenola, Hasley Rodrigo Pereira, Helen Jamille Fernandes Silva Alvez, Helena Alves do Prado, Henrique Ledo Lopes Pinho, Híngara Leão Sousa, Hugo Bornatowski, Hugo de Oliveira Barbosa, Ibon Tobes, Igor de Paiva Affonso, Igor Raposo Queiroz, Irma Vila, Iván Vinicio Jácome Negrete, Ivo Gavião Prado, Jean Ricardo Simões Vitule, Jessé Figueiredo‐Filho, Jessica Antúnez Gonzalez, Jéssica Caroline de Faria Falcão, Jéssica Vieira Teixeira, Jimmy Pincheira‐Ulbrich, Jislaine Cristina da Silva, João Antonio de Araujo Filho, João Fernando Marques da Silva, João Gabriel Genova, João Gabriel Ribeiro Giovanelli, João Vitor Perin Andriola, Jonatas Alves, Jonathan Valdiviezo‐Rivera, Jorge Brito, Jorge Iván Sánchez Botero, Jorge Liotta, Jorge Luis Ramirez, Jorge Reppold Marinho, José Luís Olivan Birindelli, Jose Luis Costa Novaes, Joseph E. Hawes, Josiane Ribolli, Juan Francisco Rivadeneira, Juan Jacobo Schmitter‐Soto, Juliana Camara Assis, Juliana Paulo da Silva, Juliana Silveira dos Santos, Juliana Wingert, Juliana Wojciechowski, Juliano André Bogoni, Juliano Ferrer, Julio César Jut Solórzano, Júlio César Sá‐Oliveira, Jussara Oliveira Vaini, Kamila Contreras Palma, Karine Orlandi Bonato, Karla Dayane de Lima Pereira, Kassiano dos Santos Sousa, Kevin Giancarlo Borja‐Acosta, Laís Carneiro, Larissa Faria, Leonardo Brito de Oliveira, Leonardo Cardoso Resende, Leonardo Ferreira da Silva Ingenito, Leonardo Oliveira Silva, Leydiane Nunes Rodrigues, Lida Guarderas‐Flores, Lidiane Martins, Lorena Tonini, Lorrana Thaís Máximo Durville Braga, Louise Cristina Gomes, Lucas de Fries, Lucas Gonçalves da Silva, Lucas Ribeiro Jarduli, Luciano Benedito Lima, Luciano Gomes Fischer, Luciano Lazzarini Wolff, Luciano Neves dos Santos, Luis Artur Valões Bezerra, Luisa Maria Sarmento Soares, Luisa Resende Manna, Luiz Fernando Duboc, Luiz Guilherme dos Santos Ribas, Luiz Roberto Malabarba, Marcelo Fulgêncio Guedes Brito, Marcelo Rennó Braga, Marcelo Silva de Almeida, Maria Cecília Sily, Maria Claudene Barros, Maria Histelle Sousa do Nascimento, Maria Laura de Souza Delapieve, Maria Teresa Fernandez Piedade, Marina Tagliaferro, Mário Cesar Cardoso de Pinna, Mario H. Yánez‐Muñoz, Mário Luís Orsi, Marlon Ferraz da Rosa, Marlos Bastiani, Marta Severino Stefani, Martha Buenaño‐Carriel, Martha Elena Valdez Moreno, Mateus Moreira de Carvalho, Mateus Tavares Kütter, Matheus Oliveira Freitas, Mauricio Cañas‐Merino, Mauricio Cetra, Mauricio Herrera‐Madrid, Mauricio Mello Petrucio, Mauro Galetti, Miguel Ángel Salcedo, Miguel Pascual, Milton Cezar Ribeiro, Milza Celi Fedatto Abelha, Mônica Andrade da Silva, Mônica Pacheco de Araujo, Murilo Sversut Dias, Naiara Guimaraes Sales, Naraiana Loureiro Benone, Natane Sartor, Nelson Ferreira Fontoura, Nicholas Silvestre de Souza Trigueiro, Nicolás Álvarez‐Pliego, Oscar Akio Shibatta, Pablo A. Tedesco, Pablo Cesar Lehmann Albornoz, Pablo Henrique Fernandes Santos, Pâmela Virgolino Freitas, Patricia Calegari Fagundes, Patrícia Domingues de Freitas, Patricio Mena‐Valenzuela, Paul Tufiño, Paula Araujo Catelani, Paula Peixoto, Paulo Ilha, Pedro De Podestà Uchôa de Aquino, Pedro Gerhard, Pedro Hollanda Carvalho, Pedro Jiménez‐Prado, Pedro Manoel Galetti, Pedro Paulino Borges, Pedro Peixoto Nitschke, Pedro Sartori Manoel, Phamela Bernardes Perônico, Philip Teles Soares, Pitágoras Augusto Piana, Priscila de Oliveira Cunha, Priscila Plesley, Rafael Couto Rosa de Souza, Rafael Rogério Rosa, Rana W. El‐Sabaawi, Raoni Rosa Rodrigues, Raphael Covain, Raquel Coelho Loures, Raul Rennó Braga, Reginaldo Ré, Rémy Bigorne, Renata Cassemiro Biagioni, Renato Azevedo Matias Silvano, Renato Bolson Dala‐Corte, Renato Tavares Martins, Ricardo Rosa, Ricardo Sartorello, Rodrigo de Almeida Nobre, Ronald D. Bassar, Ronaldo César Gurgel‐Lourenço, Ronaldo Fernando Martins Pinheiro, Ronaldo Leal Carneiro, Rosa Florido, Rosana Mazzoni, Rosane Silva‐Santos, Rosiane de Paula Santos, Rosilene Luciana Delariva, Sandra Maria Hartz, Sebastien Brosse, Sérgio Luiz Althoff, Shaka Nóbrega Marinho Furtado, Sidnei Eduardo Lima‐Junior, Silvia Yasmin Lustosa Costa, Solange Arrolho, Sonya K. Auer, Sybelle Bellay, Taís de Fátima Ramos Guimarães, Talitha Mayumi Francisco, Tatiane Mantovano, Tatyana Gomes, Telton Pedro Anselmo Ramos, Thaís de Assis Volpi, Thais Moura Emiliano, Thiago Augusto Pedroso Barbosa, Thiago José Balbi, Thiago Nascimento da Silva Campos, Thiago Teixeira Silva, Thiago Vinícius Trento Occhi, Thiely Oliveira Garcia, Tiago Magalhães da Silva Freitas, Tiago Octavio Begot, Tony Leandro Rezende da Silveira, Ueslei Lopes, Uwe Horst Schulz, Valéria Fagundes, Valéria Flávia Batista da Silva, Valter M. Azevedo‐Santos, Vanessa Ribeiro, Vanessa Graciele Tibúrcio, Vera Lúcia Lescano de Almeida, Victoria J. Isaac‐Nahum, Vinicius Abilhoa, Vinicius Farias Campos, Vinicius Tavares Kütter, Vivian de Mello Cionek, Viviane Prodocimo, Wagner Vicentin, Waldney Pereira Martins, Walna Micaelle de Moraes Pires, Weferson Júnio da Graça, Welber Senteio Smith, Wesley Dáttilo, Windsor Efren Aguirre Maldonado, Yuri Gomes Ponce de Carvalho Rocha, Yzel Rondon Súarez, and Zilda Margarete Seixas de Lucena

Subjects
biodiversity hotspot, ichthyology, Landschapsarchitectuur en Ruimtelijke Planning, Landscape Architecture and Spatial Planning, conservation, species distribution, Neotropical region, occurrence, Ecology, Evolution, Behavior and Systematics, data paper
Abstract

The Neotropical region hosts 4225 freshwater fish species, ranking first among the world's most diverse regions for freshwater fishes. Our NEOTROPICAL FRESHWATER FISHES data set is the first to produce a large-scale Neotropical freshwater fish inventory, covering the entire Neotropical region from Mexico and the Caribbean in the north to the southern limits in Argentina, Paraguay, Chile, and Uruguay. We compiled 185,787 distribution records, with unique georeferenced coordinates, for the 4225 species, represented by occurrence and abundance data. The number of species for the most numerous orders are as follows: Characiformes (1289), Siluriformes (1384), Cichliformes (354), Cyprinodontiformes (245), and Gymnotiformes (135). The most recorded species was the characid Astyanax fasciatus (4696 records). We registered 116,802 distribution records for native species, compared to 1802 distribution records for nonnative species. The main aim of the NEOTROPICAL FRESHWATER FISHES data set was to make these occurrence and abundance data accessible for international researchers to develop ecological and macroecological studies, from local to regional scales, with focal fish species, families, or orders. We anticipate that the NEOTROPICAL FRESHWATER FISHES data set will be valuable for studies on a wide range of ecological processes, such as trophic cascades, fishery pressure, the effects of habitat loss and fragmentation, and the impacts of species invasion and climate change. There are no copyright restrictions on the data, and please cite this data paper when using the data in publications.

Published
2023
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2. Delabelling beta-lactam allergy

Author

Gustavo-Jorge Molina-Molina, Diana Rocío Garnica Velandia, Blanca Andrés-López, Carolina Perales, Laura Marin-Asensio, Yanina Jurgens, Olga Esteso, Carolina Escobar, Xavier Vidal, Lourdes Vendrell, Laura Gómez-Ganda, Dolores Rodríguez, Eva Montané, Victoria Cardona, and Antònia Agustí

Subjects
beta-lactam, delabelling, drug provocation test, electronic medical records, skin test, penicillin, Therapeutics. Pharmacology, RM1-950
Abstract

Background: Hypersensitivity to beta-lactam (BL) antibiotics is one of the most frequent reported drug allergies. In our population, it is common to find labels of BL allergy in electronic medical records (EMRs) that have not been assessed. The objective of our study was to detect patients with beta-lactam allergy labels in their EMRs and to assess how many of them are false after a correct diagnostic evaluation.Methods: A multicentre prospective study was performed with patients labelled as allergic to BLs in their EMRs in the previous 5 years. Demographical and clinical data, as well as variables regarding the BL allergy label and the characteristics of the index reaction from clinical history and EMRs, were recorded. Then, diagnostic assessments including clinical history, skin tests (STs), and drug provocation tests (DPTs) were conducted in order to confirm or exclude the diagnosis of BL allergy.Results: A total of 249 patients completed the study, of which 160 (64.3%) were women with a median age of 57 years (interquartile range [IQR], 45–68). The most frequent BL allergy labels detected were for penicillin (124), amoxicillin/clavulanic acid (61), and amoxicillin (54). Of the 204 patients who underwent STs, 20.1% were positive. DPTs were performed in 224 patients, showing good tolerance in 87.1% of cases. After the allergy diagnosis work-up, 186 patients (74.7%) were diagnosed as non-allergic to BL antibiotics.Conclusion: In our study population, the number of patients labelled as allergic to BLs in their EMRs was similar to that in previously published studies, with proportions near to 75%–80% being falsely labelled as allergic to BLs.

Published
2024
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3. Mast Cell Desensitization in Allergen Immunotherapy

Author

Celia López-Sanz, Rodrigo Jiménez-Saiz, Vanesa Esteban, María Isabel Delgado-Dolset, Carolina Perales-Chorda, Alma Villaseñor, Domingo Barber, and María M. Escribese

Subjects
allergen immunotherapy, mast cell, desensitization, Treg, anaphylaxis, IgE, Immunologic diseases. Allergy, RC581-607
Abstract

Allergen immunotherapy (AIT) is the only treatment with disease-transforming potential for allergic disorders. The immunological mechanisms associated with AIT can be divided along time in two phases: short-term, involving mast cell (MC) desensitization; and long-term, with a regulatory T cell (Treg) response with significant reduction of eosinophilia. This regulatory response is induced in about 70% of patients and lasts up to 3 years after AIT cessation. MC desensitization is characteristic of the initial phase of AIT and it is often related to its success. Yet, the molecular mechanisms involved in allergen-specific MC desensitization, or the connection between MC desensitization and the development of a Treg arm, are poorly understood. The major AIT challenges are its long duration, the development of allergic reactions during AIT, and the lack of efficacy in a considerable proportion of patients. Therefore, reaching a better understanding of the immunology of AIT will help to tackle these short-comings and, particularly, to predict responder-patients. In this regard, omics strategies are empowering the identification of predictive and follow-up biomarkers in AIT. Here, we review the immunological mechanisms underlying AIT with a focus on MC desensitization and AIT-induced adverse reactions. Also, we discuss the identification of novel biomarkers with predictive potential that could improve the rational use of AIT.

Published
2022
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4. The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 2 approved with reservations]

Author

Fawaz Dabbaghie, Divya Kalra, Elbay Aliyev, Wouter De Coster, Kimberley Billingsley, Nicolae Sapoval, Shangzhe Zhang, Gaojianyong Wang, Kimberly Walker, Deepak Choubey, Li Chuin Chong, Alejandro R. Gener, Yilei Fu, Pavel Avdeyev, Ben Busby, Daniel Paiva Agustinho, Sairam Behera, Enrico R. Barrozo, Luis F Paulin, Ahmad Al Khleifat, Susanne P. Pfeifer, Muhammad Sohail Raza, Guangyi Chen, Rebecca Lowdon, Daniela C. Soto, David Molik, Anneri Lötter, Chunhsuan Lo, Suresh Kumar Mendem, Sina Majidian, Damaris Lattimer, Priya Lakra, Bai-Wei Lo, Chia-Sin Liew, Rupesh K. Kesharwani, Maria Jose, Jędrzej Kubica, Sree Rohit Raj Kolora, Wolfram Höps, David Morgan Henke, Michael D. Jochum, Anastasia Illarionova, Fritz J Sedlazeck, Weiyu Zhou, Todd Treangen, Philippe Sanio, Jianzhi Yang, Tiancheng Xu, Ramanandan Prabhakaran, Chi-Lam Poon, Aditi Sammi, Marie Saitou, Hiroko Ohmiya, Rajarshi Mondal, Najeeb Syed, Carolina Peralta, Nasrin Parvin, Timothy Hefferon, and Medhat Mahmoud

Subjects
Structural variants, k-mer, Covid-19, Long-reads, Tomatoes, Cancer, eng, Medicine, Science
Abstract

In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.

Published
2022
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6. R-ALERGO. Rutas alergosaludables en Valencia

Author

Rafael R. Temes Cordovez, Alfonso Moya Fuero, Jaume Martí Garrido, Carolina Perales Chordá, Miguel Díaz Palacios, and Dolores Hernández Fernández de Rojas

Subjects
Alergia, Aplicaciones móviles, Sistemas de información geográfica, Planificación de ciudades, Análisis de redes, Public aspects of medicine, RA1-1270
Abstract

El proyecto R-ALERGO, desarrollado entre la Universitat Politècnica de València y el Hospital Universitario La Fe, tiene como objetivo crear una aplicación móvil (App) que permita a los/las usuarios/as seleccionar, dentro de la ciudad de Valencia, las rutas más favorables para las personas alérgicas. En el desarrollo de la aplicación se ha seleccionado un conjunto de nueve variables ambientales presentes en la ciudad, que pueden influir en la aparición de manifestaciones clínicas en las personas alérgicas. Mediante el uso de un método de análisis espacial apoyado en tecnología de redes y sistemas de información geográfica se ha desarrollado la versión 01 de la App que se audita a través del Distintivo AppSaludable. El paso siguiente en este desarrollo es diseñar un proceso de validación clínica con el fin de comprobar su utilidad para las personas alérgicas.

Published
2016
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7. El acceso a la vivienda digna. Déficits habitacional y gestión de políticas públicas en Córdoba.

Author

Carolina Peralta, Mónica Alvarado, and Ana Falú

Subjects
Aesthetics of cities. City planning and beautifying, NA9000-9428, Architectural drawing and design, NA2695-2793
Abstract

Las dificultades de acceso a una vivienda digna afectan gravemente a vastos sectores de la población, derecho particularmente establecido en la Constitución Argentina en relación a las condiciones de Hábitat, o sea las condiciones urbanas de servicios, equipamientos y movilidad. Esta dificultad se presenta en los sectores de ingresos medios y bajos, y tienen además impactos diferenciales en mujeres, niños, niñas y personas con discapacidad.

Published
2017

8. Redistribución poblacional en la ciudad de Córdoba entre los períodos intercensales 1991-2001 / 2001- 2008. Evaluación de los procesos de dispersión, densificación, gentrificación y renovación

Author

Carolina Peralta and Miriam Liborio

Subjects
Despoblamiento, Redistribución, Dispersión, Córdoba, Aesthetics of cities. City planning and beautifying, NA9000-9428, Architectural drawing and design, NA2695-2793
Abstract

Se exponen algunos antecedentes relativos al proceso de despoblamiento, deterioro y cambio de rol que han sufrido los diferentes barrios de la ciudad de Córdoba desde 1970. Este deterioro y despoblamiento que experimentan las áreas peri-centrales y la consiguiente expansión territorial en desmedro de las áreas rurales circundantes, es un tema en recurrente discusión urbana. El trabajo se propone analizar el proceso de deterioro, despoblamiento, renovación y gentrificación en los barrios de la ciudad de Córdoba indagando en las pérdidas y ganancias de población, y los procesos de densificación urbanas. Por otro lado se intenta establecer una posible clasificación de los barrios con mayor crecimiento y/o pérdida poblacional, intentado establecer las posibles causas a manera de hipótesis que inducen a estos procesos. La investigación tomó como ámbito de estudio la ciudad de Córdoba (departamento capital de la provincia de Córdoba). Las fuentes utilizadas han sido las comparaciones entre los censos Nacionales 1991-2001 y Censo Provincial 2008. Entre los descriptores utilizados se cotejaron los datos provenientes de los cuatro últimos censos nacionales (1991, 2001, 2008 y 2010). Estos datos contribuyeron a definir cuantitativamente las corrientes migratorias producidas en el periodo de estudio, los gráfico se elaboraron en el OUC (Observatorio urbano Córdoba, en Argis, sistema de información georeferenciado sobre el plano base de barrios de la Municipalidad de Córdoba.

Published
2014

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