119 results on '"Campbell, Desmond"'
Search Results
2. Effects of increased body mass index on employment status: a Mendelian randomisation study
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Campbell, Desmond D., Green, Michael, Davies, Neil, Demou, Evangelia, Ward, Joey, Howe, Laura D., Harrison, Sean, Johnston, Keira J. A., Strawbridge, Rona J., Popham, Frank, Smith, Daniel J., Munafò, Marcus R., and Katikireddi, Srinivasa Vittal
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- 2021
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3. A workshop to showcase the diversity of scientists to middle school students.
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Marshall, Andrea G., Neikirk, Kit, Stephens, Dominique, Garza-Lopez, Edgar, Vue, Zer, Beasley, Heather K., Doe, Yelena Janumyan, Campbell, Desmond, Fears, Letimicia, Alghanem, Ahmad, Spencer, Elsie C., Scudese, Estevão, Owens, Beverly, Vang, Chia, Morton, Derrick J., Conley, Zachary, and Hinton Jr, Antentor
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MIDDLE school students ,GENDER identity ,RACE identity ,WHITE men ,COLLEGE students ,MIDDLE school education - Abstract
Identity matters in science, technology, engineering, mathematics, and medicine (STEMM) because it can affect an individual's long-term sense of belonging, which may in turn affect their persistence in STEMM. Early K–12 science classes often teach students about the foundational discoveries of the field, which have been predominately made, or at least published, by White men. This homogeneity can leave underrepresented individuals in STEMM feeling isolated, and underrepresented K–12 students may feel as though they cannot enter STEMM fields. This study aimed to examine these feelings of inclusivity in STEMM through an interactive workshop that asked middle schoolers to identify scientists from images of individuals with various racial and gender identities. We found that a plurality of students had a positive experience discussing diversity in science and recognizing underrepresented individuals as scientists. NEW & NOTEWORTHY: We observed positive sentiments from middle school students following a workshop that showcased diversity in science. This workshop uniquely encourages students to recognize that physiologists and scientists today are much more diverse than textbooks typically demonstrate and can be adapted for middle schoolers, high schoolers, and college students. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Two subtypes of intervertebral disc degeneration distinguished by large-scale population-based study
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Li, Yan, Samartzis, Dino, Campbell, Desmond D., Cherny, Stacey S., Cheung, Kenneth M.C., Luk, Keith D.K., Karppinen, Jaro, Song, Youqiang, Cheah, Kathryn S., Chan, Danny, and Sham, Pak C.
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- 2016
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5. Gene Variants at Loci Related to Blood Pressure Account for Variation in Response to Antihypertensive Drugs Between Black and White Individuals: Genomic Precision Medicine May Dispense With Ethnicity
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Iniesta, Raquel, Campbell, Desmond, Venturini, Cristina, Faconti, Luca, Singh, Sonal, Irvin, Marguerite R., Cooper-DeHoff, Rhonda M., Johnson, Julie A., Turner, Stephen T., Arnett, Donna K., Weale, Michael E., Warren, Helen, Munroe, Patricia B., Cruickshank, Kennedy, Padmanabhan, Sandosh, Lewis, Cathryn, and Chowienczyk, Phil
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- 2019
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6. Cognitive impairment among children at-risk for schizophrenia
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Dickson, Hannah, Cullen, Alexis E., Reichenberg, Abraham, Hodgins, Sheilagh, Campbell, Desmond D., Morris, Robin G., and Laurens, Kristin R.
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- 2014
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7. Biases Arising from Using Linked Administrative Data for Research: A Conceptual Framework from Registration to Analysis
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Shaw, Richard, Harron, Katie, Pescarini, Julia, Júnior, Elzo, Siroky, Andressa, Campbell, Desmond, Dundas, Ruth, Ichihara, Maria Yury, Barreto, Mauricio, and Katikireddi, Vittal
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Information Systems and Management ,Health Informatics ,Information Systems ,Demography - Abstract
Objectives:\ud Administrative data are primarily collected for operational processes and these processes can lead to sources of bias that may not be adequately considered by researchers. We provide a framework to help understand how biases might arise from using linked administrative data, and hopefully aid future study designs.\ud \ud \ud Approach:\ud We developed the conceptual framework based on the team’s experiences with the 100 Million Brazilian Cohort (100MCohort) which contains records of more than 131 million people whose families applied for social assistance between 2001 and 2018, linked to other administrative data sources. We provide examples from the 100MCohort of where and how in the linkage process different forms of bias could arise. We make recommendations on how biases might be addressed using commonly available external data.\ud \ud \ud Results:\ud The conceptual framework covers the whole data generating process from people and events occurring in the population through to deriving variables for analysis. The framework comprises three distinct stages: 1) Recording and registration of events in administrative systems such as Brazil’s Mortality Information System (SIM) and the Hospital Information System (SIH); 2) Linkage of different data sources, for example using exact matching via the Social Identification Number (NIS) in Brazil’s CadÚnico database or linkage algorithms; 3) Cleaning and coding data used both for analysis and linkage. The biases arising from linkage can be better understood by applying theory and making additional metadata available.\ud \ud \ud Conclusion:\ud Maximising the potential of administrative data for research requires a better understanding of how biases arise. This is best achieved by considering the entire data generating process, and better communication among all those involved in the data collection and linkage processes.
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- 2022
8. Local True Discovery Rate Weighted Polygenic Scores Using GWAS Summary Data
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Mak, Timothy Shin Heng, Kwan, Johnny Sheung Him, Campbell, Desmond Dedalus, and Sham, Pak Chung
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- 2016
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9. Orbital Motion of Electrically Charged Spheres in Microgravity
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Banerjee, Shubho, Andring, Kevin, and Campbell, Desmond
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The similar mathematical forms of Coulomb's law and Newton's law of gravitation suggest that two uniformly charged spheres should be able to orbit each other just as two uniform spheres of mass are known to do. In this paper we describe an experiment that we performed to demonstrate such an orbit. This is the first published account of a successful orbit using electrostatic forces.
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- 2008
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10. The emerging molecular architecture of schizophrenia, polygenic risk scores and the clinical implications for GxE research
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Iyegbe, Conrad, Campbell, Desmond, Butler, Amy, Ajnakina, Olesya, and Sham, Pak
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- 2014
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11. Impact of Brazil's Bolsa Família Programme on cardiovascular and all-cause mortality: a natural experiment study using the 100 Million Brazilian Cohort.
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Pescarini, Julia M, Campbell, Desmond, Amorim, Leila D, Falcão, Ila R, Ferreira, Andrêa J F, Allik, Mirjam, Shaw, Richard J, Malta, Deborah C, Ali, M Sanni, Smeeth, Liam, Barreto, Mauricio L, Leyland, Alastair, Craig, Peter, Aquino, Estela M L, and Katikireddi, Srinivasa Vittal
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MORTALITY , *CONDITIONAL cash transfer programs , *STATISTICAL models , *EARLY death , *POOR people - Abstract
Background Cardiovascular disease (CVD) has a disproportionate effect on mortality among the poorest people. We assessed the impact on CVD and all-cause mortality of the world's largest conditional cash transfer, Brazil's Bolsa Família Programme (BFP). Methods We linked administrative data from the 100 Million Brazilian Cohort with BFP receipt and national mortality data. We followed individuals who applied for BFP between 1 January 2011 and 31 December 2015, until 31 December 2015. We used marginal structural models to estimate the effect of BFP on all-age and premature (30–69 years) CVD and all-cause mortality. We conducted stratified analyses by levels of material deprivation and access to healthcare. We checked the robustness of our findings by restricting the analysis to municipalities with better mortality data and by using alternative statistical methods. Results We studied 17 981 582 individuals, of whom 4 855 324 were aged 30–69 years. Three-quarters (76.2%) received BFP, with a mean follow-up post-award of 2.6 years. We detected 106 807 deaths by all causes, of which 60 893 were premature; and 23 389 CVD deaths, of which 15 292 were premature. BFP was associated with reductions in premature all-cause mortality [hazard ratio (HR) = 0.96, 95% CI = 0.94–0.98], premature CVD (HR = 0.96, 95% CI = 0.92–1.00) and all-age CVD (HR = 0.96, 95% CI = 0.93–1.00) but not all-age all-cause mortality (HR = 1.00, 95% CI = 0.98–1.02). In stratified and robustness analyses, BFP was consistently associated with mortality reductions for individuals living in the two most deprived quintiles. Conclusions BFP appears to have a small to null effect on premature CVD and all-cause mortality in the short term; the long-term impact remains unknown. [ABSTRACT FROM AUTHOR]
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- 2022
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12. Comparing Anxiety and Depression in Information Technology Workers with Others in Employment: A UK Biobank Cohort Study.
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Lalloo, Drushca, Lewsey, Jim, Katikireddi, Srinivasa Vittal, Macdonald, Ewan B, Campbell, Desmond, and Demou, Evangelia
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CONFIDENCE intervals ,WHITE collar workers ,HEALTH outcome assessment ,COMPARATIVE studies ,PSYCHOSOCIAL factors ,MENTAL depression ,SURVIVAL analysis (Biometry) ,POPULATION-based case control ,LONELINESS ,ANXIETY ,LOGISTIC regression analysis ,ODDS ratio ,INFORMATION technology ,PSYCHOLOGICAL distress ,LONGITUDINAL method ,PROPORTIONAL hazards models - Abstract
Objectives Despite reported psychological hazards of information technology (IT) work, studies of diagnosed mental health conditions in IT workers are lacking. We investigated self-reported mental health outcomes and incident anxiety/depression in IT workers compared to others in employment in a large population-based cohort. Methods We evaluated self-reported mental health outcomes in the UK Biobank cohort and incident diagnosed anxiety/depression through health record linkage. We used logistic regression and Cox models to compare the risks of prevalent and incident anxiety/depression among IT workers with all other employed participants. Furthermore, we compared outcomes within IT worker subgroups, and between these subgroups and other similar occupations within their major Standard Occupational Classification (SOC) group. Results Of 112 399 participants analyzed, 4093 (3.6%) were IT workers. At baseline, IT workers had a reduced odds (OR = 0.66, 95%CI: 0.52–0.85) of anxiety/depression symptoms and were less likely (OR = 0.87, 95%CI: 0.83–0.91) to have ever attended their GP for anxiety/depression, compared to all other employed participants, after adjustment for confounders. The IT technician subgroup were more likely (OR = 1.22, 95%CI: 1.07–1.40) to have previously seen their GP or a psychiatrist (OR = 1.31, 95%CI: 1.06–1.62) for anxiety/depression than their SOC counterparts. IT workers had lower incident anxiety/depression (HR = 0.84, 95%CI 0.77–0.93) compared to all other employed participants, after adjustment for confounders. Conclusions Our findings from this, the first longitudinal study of IT worker mental health, set the benchmark in our understanding of the mental health of this growing workforce and identification of high-risk groups. This will have important implications for targeting mental health workplace interventions. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Effects of depression on employment and social outcomes: a Mendelian randomisation study.
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Campbell, Desmond, Green, Michael James, Davies, Neil, Demou, Evangelia, Howe, Laura D., Harrison, Sean, Smith, Daniel J., Howard, David M., McIntosh, Andrew M., Munafò, Marcus, and Katikireddi, Srinivasa Vittal
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CONFIDENCE intervals ,DISABILITY evaluation ,SOCIOECONOMIC factors ,MENTAL depression ,EMPLOYMENT ,DESCRIPTIVE statistics ,ODDS ratio - Published
- 2022
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14. Application of Haralick texture features in brain [18F]-florbetapir positron emission tomography without reference region normalization
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Campbell,Desmond L, Kang,Hakmook, and Shokouhi,Sepideh
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Aged, 80 and over ,Male ,Amyloid ,Aniline Compounds ,Brain ,Severity of Illness Index ,Pattern Recognition, Automated ,ROC Curve ,Alzheimer Disease ,Clinical Interventions in Aging ,Positron-Emission Tomography ,Disease Progression ,florbetapir ,Humans ,Cognitive Dysfunction ,Ethylene Glycols ,Female ,gray level co-occurrence matrix ,Haralick features ,entropy ,Original Research ,energy ,Aged - Abstract
DesmondL Campbell,1 Hakmook Kang,2 Sepideh Shokouhi1 On behalf of The Alzheimer’s Disease Neuroimaging Initiative 1Department of Radiology and Radiological Sciences, 2Department of Biostatistics, Vanderbilt University Medical Center, Vanderbilt University Institute of Imaging Science, Nashville, TN, USA Objectives: Semi-quantitative image analysis methods in Alzheimer’s Disease (AD) require normalization of positron emission tomography (PET) images. However, recent studies have found variabilities associated with reference region selection of amyloid PET images. Haralick features (HFs) generated from the Gray Level Co-occurrence Matrix (GLCM) quantify spatial characteristics of amyloid PET radiotracer uptake without the need for intensity normalization. The objective of this study is to calculate several HFs in different diagnostic groups and determine the group differences.Methods: All image and metadata were acquired through the Alzheimer’s Disease Neuroimaging Initiative database. Subjects were grouped in three ways: by clinical diagnosis, by APOE e4 allele, and by Alzheimer’s Disease Assessment Scale-cognitive subscale (ADAS-Cog) score. Several GLCM matrices were calculated for different direction and distances (1–4 mm) from multiple regions on PET images. The HFs, contrast, correlation, dissimilarity, energy, entropy, and homogeneity, were calculated from these GLCMs. Wilcoxon tests and Student t-tests were performed on Haralick features and standardized uptake value ratio (SUVR) values, respectively, to determine group differences. In addition to statistical testing, receiver operating characteristic (ROC) curves were generated to determine the discrimination performance of the selected regional HFs and the SUVR values.Results: Preliminary results from statistical testing indicate that HFs were capable of distinguishing groups at baseline and follow-up (false discovery rate corrected p
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- 2017
15. Reconstructing Native American population history
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Reich, David, Patterson, Nick, Campbell, Desmond, Tandon, Arti, Mazieres, Stéphane, Ray, Nicolas, Parra, Maria V., Rojas, Winston, Duque, Constanza, Mesa, Natalia, García, Luis F., Triana, Omar, Blair, Silvia, Maestre, Amanda, Dib, Juan C., Bravi, Claudio M., Bailliet, Graciela, Corach, Daniel, Hünemeier, Tábita, Bortolini, Maria Cátira, Salzano, Francisco M., Petzl-Erler, María Luiza, Acuña-Alonzo, Victor, Aguilar-Salinas, Carlos, Canizales-Quinteros, Samuel, Tusié-Luna, Teresa, Riba, Laura, Rodríguez-Cruz, Maricela, Lopez-Alarcón, Mardia, Coral-Vazquez, Ramón, Canto-Cetina, Thelma, Silva-Zolezzi, Irma, Fernandez-Lopez, Juan Carlos, Contreras, Alejandra V., Jimenez-Sanchez, Gerardo, Gómez-Vázquez, Maria José, Molina, Julio, Carracedo, Ángel, Salas, Antonio, Gallo, Carla, Poletti, Giovanni, Witonsky, David B., Alkorta-Aranburu, Gorka, Sukernik, Rem I., Osipova, Ludmila, Fedorova, Sardana A., Vasquez, René, Villena, Mercedes, Moreau, Claudia, Barrantes, Ramiro, Pauls, David, Excoffier, Laurent, Bedoya, Gabriel, Rothhammer, Francisco, Dugoujon, Jean-Michel, Larrouy, Georges, Klitz, William, Labuda, Damian, Kidd, Judith, Kidd, Kenneth, Di Rienzo, Anna, Freimer, Nelson B., Price, Alkes L., and Ruiz-Linares, Andrés
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- 2012
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16. Salt stress in the renal tubules is linked to TAL specific expression of uromodulin and an upregulation of heat shock genes
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Graham, Lesley A., Aman, Alisha, Campbell, Desmond D., Augley, Julian, Graham, Delyth, McBride, Martin W., Fraser, Niall J., Ferreri, Nicholas R., Dominiczak, Anna F., and Padmanabhan, Sandosh
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Previously, our comprehensive cardiovascular characterisation study validated Uromodulin as a blood pressure gene. Uromodulin is a glycoprotein exclusively synthesised at the thick ascending limb of the loop of Henle and is encoded by the Umod gene. Umod mice have significantly lower blood pressure than Umod mice, are resistant to salt-induced changes in blood pressure, and show a leftward shift in pressure-natriuresis curves reflecting changes of sodium reabsorption. Salt stress triggers transcription factors and genes that alter renal sodium reabsorption. To date there are no studies on renal transcriptome responses to salt stress. Here we aimed to delineate salt stress pathways in tubules isolated from Umod mice (a model of sodium retention) and Umod mice (a model of sodium depletion) ±300mOsmol sodium chloride (n=3 per group) performing RNA-Seq. In response to salt stress, the tubules of Umod mice displayed an up regulation of heat shock transcripts. The greatest changes occurred in the expression of: Hspa1a (Log2 fold change 4.35, p=2.48e-12) and Hspa1b (Log2 fold change 4.05, p=2.48e-12). This response was absent in tubules of Umod mice. Interestingly, 7 of the genes discordantly expressed in the Umod tubules were electrolyte transporters. Our results are the first to show that salt stress in renal tubules alters the transcriptome, increasing the expression of heat shock genes. This direction of effect in Umod tubules suggest the difference is due to the presence of Umod facilitating greater sodium entry into the tubule cell reflecting a specific response to salt stress.
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- 2018
17. Multifactorial disease risk calculator: risk prediction for multifactorial disease pedigrees
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Campbell, Desmond D., Li, Yiming, and Sham, Pak C.
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Construction of multifactorial disease models from epidemiological findings and their application to disease pedigrees for risk prediction is nontrivial for all but the simplest of cases. Multifactorial Disease Risk Calculator is a web tool facilitating this. It provides a user-friendly interface, extending a reported methodology based on a liability-threshold model. Multifactorial disease models incorporating all the following features in combination are handled: quantitative risk factors (including polygenic scores), categorical risk factors (including major genetic risk loci), stratified age of onset curves, and the partition of the population variance in disease liability into genetic, shared, and unique environment effects. It allows the application of such models to disease pedigrees. Pedigree-related outputs are (i) individual disease risk for pedigree members, (ii) n year risk for unaffected pedigree members, and (iii) the disease pedigree's joint liability distribution. Risk prediction for each pedigree member is based on using the constructed disease model to appropriately weigh evidence on disease risk available from personal attributes and family history. Evidence is used to construct the disease pedigree's joint liability distribution. From this, lifetime and n year risk can be predicted. Example disease models and pedigrees are provided at the website and are used in accompanying tutorials to illustrate the features available. The website is built on an R package which provides the functionality for pedigree validation, disease model construction, and risk prediction. Website: http://grass.cgs.hku.hk:3838/mdrc/current.
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- 2018
18. Suicidal ideation during treatment of depression with escitalopram and nortriptyline in Genome-Based Therapeutic Drugs for Depression (GENDEP): a clinical trial
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Giovannini Caterina, Zobel Astrid, Strohmaier Jana, Jorgensen Lisbeth, Szczepankiewicz Aleksandra, Placentino Anna, Souery Daniel, Maier Wolfgang, Hauser Joanna, Henigsberg Neven, Mors Ole, Rietschel Marcella, Marusic Andrej, Uher Rudolf, Perroud Nader, Elkin Amanda, Gunasinghe Cerisse, Gray Joanna, Campbell Desmond, Gupta Bhanu, Farmer Anne E, McGuffin Peter, and Aitchison Katherine J
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Medicine - Abstract
Abstract Background Suicidal thoughts and behaviours during antidepressant treatment, especially during the first weeks of treatment, have prompted warnings by regulatory bodies. The aim of the present study is to investigate the course and predictors of emergence and worsening of suicidal ideation during tricyclic antidepressant and serotonin reuptake inhibitor treatment. Methods In a multicentre part-randomised open-label study, 811 adult patients with moderate to severe unipolar depression were allocated to flexible dosage of escitalopram or nortriptyline for 12 weeks. The suicidality items of three standard measures were integrated in a suicidal ideation score. Increases in this score were classified as treatment emergent suicidal ideation (TESI) or treatment worsening suicidal ideation (TWOSI) according to the absence or presence of suicidal ideation at baseline. Results Suicidal ideation decreased during antidepressant treatment. Rates of TESI and TWOSI peaked in the fifth week. Severity of depression predicted TESI and TWOSI. In men, nortriptyline was associated with a 9.8-fold and 2.4-fold increase in TESI and TWOSI compared to escitalopram, respectively. Retirement and history of suicide attempts predicted TWOSI. Conclusion Increases in suicidal ideation were associated with depression severity and decreased during antidepressant treatment. In men, treatment with escitalopram is associated with lower risk of suicidal ideation compared to nortriptyline. Clinicians should remain alert to suicidal ideation beyond the initial weeks of antidepressant treatment. Trial registration EudraCT (No.2004-001723-38) and ISRCTN (No. 03693000).
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- 2009
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19. Mental health and health behaviours before and during the initial phase of the COVID-19 lockdown: longitudinal analyses of the UK Household Longitudinal Study.
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Niedzwiedz, Claire L., Green, Michael James, Benzeval, Michaela, Campbell, Desmond, Craig, Peter, Demou, Evangelia, Leyland, Alastair, Pearce, Anna, Thomson, Rachel, Whitley, Elise, and Katikireddi, Srinivasa Vittal
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ALCOHOLISM ,CONFIDENCE intervals ,PSYCHOLOGICAL distress ,HEALTH behavior ,INTERVIEWING ,LONELINESS ,LONGITUDINAL method ,MENTAL health ,QUESTIONNAIRES ,SMOKING ,SOCIOECONOMIC factors ,DISEASE prevalence ,CROSS-sectional method ,ELECTRONIC cigarettes ,DESCRIPTIVE statistics ,ATTITUDES toward illness ,STAY-at-home orders ,COVID-19 pandemic - Published
- 2021
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20. The causal effects of health conditions and risk factors on social and socioeconomic outcomes: Mendelian randomization in UK Biobank.
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Harrison, Sean, Davies, Alisha R, Dickson, Matt, Tyrrell, Jessica, Green, Michael J, Katikireddi, Srinivasa Vittal, Campbell, Desmond, Munafò, Marcus, Dixon, Padraig, Jones, Hayley E, Rice, Frances, Davies, Neil M, and Howe, Laura D
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SOCIOECONOMIC factors ,SYSTOLIC blood pressure ,WHEEZE ,CORONARY disease ,BODY mass index ,TYPE 2 diabetes ,WHITE men ,HEART disease related mortality ,RESEARCH ,TISSUE banks ,RESEARCH methodology ,MEDICAL cooperation ,EVALUATION research ,COMPARATIVE studies ,RESEARCH funding - Abstract
Background: We aimed to estimate the causal effect of health conditions and risk factors on social and socioeconomic outcomes in UK Biobank. Evidence on socioeconomic impacts is important to understand because it can help governments, policy makers and decision makers allocate resources efficiently and effectively.Methods: We used Mendelian randomization to estimate the causal effects of eight health conditions (asthma, breast cancer, coronary heart disease, depression, eczema, migraine, osteoarthritis, type 2 diabetes) and five health risk factors [alcohol intake, body mass index (BMI), cholesterol, systolic blood pressure, smoking] on 19 social and socioeconomic outcomes in 336 997 men and women of White British ancestry in UK Biobank, aged between 39 and 72 years. Outcomes included annual household income, employment, deprivation [measured by the Townsend deprivation index (TDI)], degree-level education, happiness, loneliness and 13 other social and socioeconomic outcomes.Results: Results suggested that BMI, smoking and alcohol intake affect many socioeconomic outcomes. For example, smoking was estimated to reduce household income [mean difference = -£22 838, 95% confidence interval (CI): -£31 354 to -£14 321] and the chance of owning accommodation [absolute percentage change (APC) = -20.8%, 95% CI: -28.2% to -13.4%], of being satisfied with health (APC = -35.4%, 95% CI: -51.2% to -19.5%) and of obtaining a university degree (APC = -65.9%, 95% CI: -81.4% to -50.4%), while also increasing deprivation (mean difference in TDI = 1.73, 95% CI: 1.02 to 2.44, approximately 216% of a decile of TDI). There was evidence that asthma decreased household income, the chance of obtaining a university degree and the chance of cohabiting, and migraine reduced the chance of having a weekly leisure or social activity, especially in men. For other associations, estimates were null.Conclusions: Higher BMI, alcohol intake and smoking were all estimated to adversely affect multiple social and socioeconomic outcomes. Effects were not detected between health conditions and socioeconomic outcomes using Mendelian randomization, with the exceptions of depression, asthma and migraines. This may reflect true null associations, selection bias given the relative health and age of participants in UK Biobank, and/or lack of power to detect effects. [ABSTRACT FROM AUTHOR]- Published
- 2020
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21. The Social Work Task in an Acute Psychiatric In-Patient Unit
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McAULEY, PATRICIA, CATHERWOOD, MARY-LOUISE, BOLTON, ROSEMARY, and CAMPBELL, DESMOND
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- 1983
22. Interplay between Schizophrenia Polygenic Risk Score and Childhood Adversity in First-Presentation Psychotic Disorder:A Pilot Study
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Trotta, Antonella, Iyegbe, Conrad Osamede, Di Forti, Marta, Sham, Pak, Campbell, Desmond, Cherny, Stacey, Mondelli, Valeria, Aitchison, KJ, Murray, Robin MacGregor, Vassos, Evangelos, and Fisher, Helen
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A history of childhood adversity is associated with psychotic disorder, with an increase in risk according to number or severity of exposures. However, it is not known why only some exposed individuals go on to develop psychosis. One possibility is pre-existing genetic vulnerability. Research on gene-environment interaction in psychosis has primarily focused on candidate genes, although the genetic effects are now known to be polygenic. This pilot study investigated whether the effect of childhood adversity on psychosis is moderated by the polygenic risk score for schizophrenia (PRS). Data were utilised from the Genes and Psychosis (GAP) study set in South London, UK. The GAP sample comprises 285 first-presentation psychosis cases and 256 unaffected controls with information on childhood adversity. We studied only white subjects (80 cases and 110 controls) with PRS data, as the PRS has limited predictive ability in patients of African ancestry. The occurrence of childhood adversity was assessed with the Childhood Experience of Care and Abuse Questionnaire (CECA.Q) and the PRS was based on genome-wide meta-analysis results for schizophrenia from the Psychiatric Genomics Consortium. Higher schizophrenia PRS and childhood adversities each predicted psychosis status. Nevertheless, no evidence was found for interaction as departure from additivity, indicating that the effect of polygenic risk scores on psychosis was not increased in the presence of a history of childhood adversity. These findings are compatible with a multifactorial threshold model in which both genetic liability and exposure to environmental risk contribute independently to the etiology of psychosis.
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- 2016
23. Interplay between Schizophrenia Polygenic Risk Score and Childhood Adversity in First-Presentation Psychotic Disorder: A Pilot Study
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Trotta, Antonella, Iyegbe, Conrad, Di Forti, Marta, Sham, Pak C., Campbell, Desmond D., Cherny, Stacey S., Mondelli, Valeria, Aitchison, Katherine J., Murray, Robin M., Vassos, Evangelos, and Fisher, Helen L.
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Adult ,Male ,Multifactorial Inheritance ,Etiology ,Psychometrics ,lcsh:Medicine ,Social Sciences ,Pilot Projects ,Criminology ,Pathology and Laboratory Medicine ,Research and Analysis Methods ,Pediatrics ,Risk Assessment ,Young Adult ,Sociology ,Risk Factors ,Mental Health and Psychiatry ,Medicine and Health Sciences ,Genetics ,Psychology ,Humans ,Genetic Predisposition to Disease ,Child Abuse ,lcsh:Science ,Genome ,lcsh:R ,Psychoses ,Biology and Life Sciences ,Human Genetics ,Pilot Studies ,Adult Survivors of Child Adverse Events ,Psychotic Disorders ,Research Design ,Schizophrenia ,lcsh:Q ,Female ,Gene-Environment Interaction ,Crime ,Research Article - Abstract
A history of childhood adversity is associated with psychotic disorder, with an increase in risk according to number or severity of exposures. However, it is not known why only some exposed individuals go on to develop psychosis. One possibility is pre-existing genetic vulnerability. Research on gene-environment interaction in psychosis has primarily focused on candidate genes, although the genetic effects are now known to be polygenic. This pilot study investigated whether the effect of childhood adversity on psychosis is moderated by the polygenic risk score for schizophrenia (PRS). Data were utilised from the Genes and Psychosis (GAP) study set in South London, UK. The GAP sample comprises 285 first-presentation psychosis cases and 256 unaffected controls with information on childhood adversity. We studied only white subjects (80 cases and 110 controls) with PRS data, as the PRS has limited predictive ability in patients of African ancestry. The occurrence of childhood adversity was assessed with the Childhood Experience of Care and Abuse Questionnaire (CECA.Q) and the PRS was based on genome-wide meta-analysis results for schizophrenia from the Psychiatric Genomics Consortium. Higher schizophrenia PRS and childhood adversities each predicted psychosis status. Nevertheless, no evidence was found for interaction as departure from additivity, indicating that the effect of polygenic risk scores on psychosis was not increased in the presence of a history of childhood adversity. These findings are compatible with a multifactorial threshold model in which both genetic liability and exposure to environmental risk contribute independently to the etiology of psychosis.
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- 2016
24. A single nucleotide variant in HNF-1β is associated with maturity-onset diabetes of the young in a large Chinese family
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Zhou, Peng, Wei, Ran, Guo, Zhenkui, Zhu, Haining, Campbell, Desmond, Li, Qi, Xu, Xiaoqun, Wang, Junfu, Luan, Meng, Chen, Xing, and Chen, Gang
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Maturity-onset diabetes of the young (MODY) ,lcsh:Public aspects of medicine ,lcsh:RA1-1270 ,Maturity-onset diabetes of the young type 5 (MODY5) ,Hepatic nuclear factor 1 beta (HNF1β) - Abstract
Background:\ud \ud Maturity-onset diabetes of the young (MODY) is a heterogeneous entity of monogenic disorders characterized by autosomal dominant inheritance. Eleven genes were related, including HNF4α, GCK, HNF1α, IPF1, and HNF-1β, and various mutations are being reported.\ud \ud Methods:\ud \ud To help the overall understanding of MODY-related pathologic mutations, we studied a large MODY family found in 2012, in Shandong, China, which contained 9 patients over 3 generations. DNA was extracted from the periphery blood samples of (i) 9 affected members, (ii) 17 unaffected members, and (iii) 1000 healthy controls. Three pooled samples were obtained by mixing equal quantity of DNA of each individual within the each group. Totally 400 microsatellite markers across the whole genome were genotyped by capillary electrophoresis. The known MODY-related gene near the identified marker was sequenced to look for putative risk variants.\ud \ud Results:\ud \ud Allelic frequency of marker D17S798 on chromosome 17q11.2 were significantly different (P
- Published
- 2016
25. Peer review of 'The signed Kolmogorov-Smirnov test: why it should not be used'
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Campbell, Desmond
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This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.
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- 2015
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26. Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette Syndrome and Obsessive-Compulsive Disorder
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Yu, Dongmei, Mathews, Carol A., Scharf, Jeremiah M., Neale, Benjamin M., Davis, Lea K., Gamazon, Eric R., Derks, Eske M., Evans, Patrick, Edlund, Christopher K., Crane, Jacquelyn, Fagerness, Jesen A., Osiecki, Lisa, Gallagher, Patience, Gerber, Gloria, Haddad, Stephen, Illmann, Cornelia, McGrath, Lauren M., Mayerfeld, Catherine, Arepalli, Sampath, Barlassina, Cristina, Barr, Cathy L., Bellodi, Laura, Benarroch, Fortu, Berrió, Gabriel Bedoya, Bienvenu, O. Joseph, Black, Donald, Bloch, Michael H., Brentani, Helena, Bruun, Ruth D., Budman, Cathy L., Camarena, Beatriz, Campbell, Desmond D., Cappi, Carolina, Cardona Silgado, Julio C., Cavallini, Maria C., Chavira, Denise A., Chouinard, Sylvain, Cook, Edwin H., Cookson, M. R., Coric, Vladimir, Cullen, Bernadette, Cusi, Daniele, Delorme, Richard, Denys, Damiaan, Dion, Yves, Eapen, Valsama, Egberts, Karin, Falkai, Peter, Fernandez, Thomas, Fournier, Eduardo, Garrido, Helena, Geller, Daniel, Gilbert, Donald, Girard, Simon L., Grabe, Hans J., Grados, Marco A., Greenberg, Benjamin D., Gross-Tsur, Varda, Grünblatt, Edna, Hardy, John, Heiman, Gary A., Hemmings, Sian M.J., Herrera, Luis D., Hezel, Dianne M., Hoekstra, Pieter J., Jankovic, Joseph, Kennedy, James L., King, Robert A., Konkashbaev, Anuar I., Kremeyer, Barbara, Kurlan, Roger, Lanzagorta, Nuria, Leboyer, Marion, Leckman, James F., Lennertz, Leonhard, Liu, Chunyu, Lochner, Christine, Lowe, Thomas L., Lupoli, Sara, Macciardi, Fabio, Maier, Wolfgang, Manunta, Paolo, Marconi, Maurizio, McCracken, James T., Mesa Restrepo, Sandra C., Moessner, Rainald, Moorjani, Priya, Morgan, Jubel, Muller, Heike, Murphy, Dennis L., Naarden, Allan L., Ochoa, William Cornejo, Ophoff, Roel A., Pakstis, Andrew J., Pato, Michele T., Pato, Carlos N., Piacentini, John, Pittenger, Christopher, Pollak, Yehuda, Rauch, Scott L., Renner, Tobias, Reus, Victor I., Richter, Margaret A., Riddle, Mark A., Robertson, Mary M., Romero, Roxana, Rosário, Maria C., Rosenberg, David, Ruhrmann, Stephan, Sabatti, Chiara, Salvi, Erika, Sampaio, Aline S., Samuels, Jack, Sandor, Paul, Service, Susan K., Sheppard, Brooke, Singer, Harvey S., Smit, Jan H., Stein, Dan J., Strengman, Eric, Tischfield, Jay A., Turiel, Maurizio, Valencia Duarte, Ana V., Vallada, Homero, Veenstra-VanderWeele, Jeremy, Walitza, Susanne, Walkup, John, Wang, Ying, Weale, Mike, Weiss, Robert, Wendland, Jens R., Westenberg, Herman G.M., Yao, Yin, Hounie, Ana G., Miguel, Euripedes C., Nicolini, Humberto, Wagner, Michael, Ruiz-Linares, Andres, Cath, Danielle C., McMahon, William, Posthuma, Danielle, Oostra, Ben A., Nestadt, Gerald, Rouleau, Guy A., Purcell, Shaun, Jenike, Michael A., Heutink, Peter, Hanna, Gregory L., Conti, David V., Arnold, Paul D., Freimer, Nelson, Stewart, S. Evelyn, Knowles, James A., Cox, Nancy J., and Pauls, David L.
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Adult ,Male ,Psychiatric Status Rating Scales ,Obsessive-Compulsive Disorder ,Comorbidity ,behavioral disciplines and activities ,Polymorphism, Single Nucleotide ,Severity of Illness Index ,Article ,mental disorders ,Humans ,Female ,Genome-Wide Association Study ,Tourette Syndrome - Abstract
Obsessive-compulsive disorder (OCD) and Tourette's syndrome are highly heritable neurodevelopmental disorders that are thought to share genetic risk factors. However, the identification of definitive susceptibility genes for these etiologically complex disorders remains elusive. The authors report a combined genome-wide association study (GWAS) of Tourette's syndrome and OCD.The authors conducted a GWAS in 2,723 cases (1,310 with OCD, 834 with Tourette's syndrome, 579 with OCD plus Tourette's syndrome/chronic tics), 5,667 ancestry-matched controls, and 290 OCD parent-child trios. GWAS summary statistics were examined for enrichment of functional variants associated with gene expression levels in brain regions. Polygenic score analyses were conducted to investigate the genetic architecture within and across the two disorders.Although no individual single-nucleotide polymorphisms (SNPs) achieved genome-wide significance, the GWAS signals were enriched for SNPs strongly associated with variations in brain gene expression levels (expression quantitative loci, or eQTLs), suggesting the presence of true functional variants that contribute to risk of these disorders. Polygenic score analyses identified a significant polygenic component for OCD (p=2×10(-4)), predicting 3.2% of the phenotypic variance in an independent data set. In contrast, Tourette's syndrome had a smaller, nonsignificant polygenic component, predicting only 0.6% of the phenotypic variance (p=0.06). No significant polygenic signal was detected across the two disorders, although the sample is likely underpowered to detect a modest shared signal. Furthermore, the OCD polygenic signal was significantly attenuated when cases with both OCD and co-occurring Tourette's syndrome/chronic tics were included in the analysis (p=0.01).Previous work has shown that Tourette's syndrome and OCD have some degree of shared genetic variation. However, the data from this study suggest that there are also distinct components to the genetic architectures of these two disorders. Furthermore, OCD with co-occurring Tourette's syndrome/chronic tics may have different underlying genetic susceptibility compared with OCD alone.
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- 2014
27. Partitioning the heritability of Tourette Syndrome and obsessive compulsive disorder reveals differences in genetic architecture
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Keller, Matthew C., Davis, Lea K., Yu, Dongmei, Keenan, Clare L., Gamazon, Eric R., Konkashbaev, Anuar I., Derks, Eske M., Neale, Benjamin M., Yang, Jian, Lee, S. Hong, Evans, Patrick, Barr, Cathy L., Bellodi, Laura, Benarroch, Fortu, Berrio, Gabriel Bedoya, Bienvenu, Oscar J., Bloch, Michael H., Blom, Rianne M., Bruun, Ruth D., Budman, Cathy L., Camarena, Beatriz, Campbell, Desmond, Cappi, Carolina, Cardona Silgado, Julio C., Cath, Danielle C., Cavallini, Maria C., Chavira, Denise A., Chouinard, Sylvain, Conti, David V., Cook, Edwin H., Coric, Vladimir, Cullen, Bernadette A., Deforce, Dieter, Delorme, Richard, Dion, Yves, Edlund, Christopher K., Egberts, Karin, Falkai, Peter, Fernandez, Thomas V., Gallagher, Patience J., Garrido, Helena, Geller, Daniel, Girard, Simon L., Grabe, Hans J., Grados, Marco A., Greenberg, Benjamin D., Gross-Tsur, Varda, Haddad, Stephen, Heiman, Gary A., Hemmings, Sian M. J., Hounie, Ana G., Illmann, Cornelia, Jankovic, Joseph, Jenike, Michael A., Kennedy, James L., King, Robert A., Kremeyer, Barbara, Kurlan, Roger, Lanzagorta, Nuria, Leboyer, Marion, Leckman, James F., Lennertz, Leonhard, Liu, Chunyu, Lochner, Christine, Lowe, Thomas L., Macciardi, Fabio, McCracken, James T., McGrath, Lauren M., Mesa Restrepo, Sandra C., Moessner, Rainald, Morgan, Jubel, Muller, Heike, Murphy, Dennis L., Naarden, Allan L., Ochoa, William Cornejo, Ophoff, Roel A., Osiecki, Lisa, Pakstis, Andrew J., Pato, Michele T., Pato, Carlos N., Piacentini, John, Pittenger, Christopher, Pollak, Yehuda, Rauch, Scott L., Renner, Tobias J., Reus, Victor I., Richter, Margaret A., Riddle, Mark A., Robertson, Mary M., Romero, Roxana, Rosàrio, Maria C., Rosenberg, David, Rouleau, Guy A., Ruhrmann, Stephan, Ruiz-Linares, Andres, Sampaio, Aline S., Samuels, Jack, Sandor, Paul, Sheppard, Brooke, Singer, Harvey S., Smit, Jan H., Stein, Dan J., Strengman, E., Tischfield, Jay A., Valencia Duarte, Ana V., Vallada, Homero, Van Nieuwerburgh, Filip, Veenstra-VanderWeele, Jeremy, Walitza, Susanne, Wang, Ying, Wendland, Jens R., Westenberg, Herman G. M., Shugart, Yin Yao, Miguel, Euripedes C., McMahon, William, Wagner, Michael, Nicolini, Humberto, Posthuma, Danielle, Hanna, Gregory L., Heutink, Peter, Denys, Damiaan, Arnold, Paul D., Oostra, Ben A., Nestadt, Gerald, Freimer, Nelson B., Pauls, David L., Wray, Naomi R., Stewart, S. Evelyn, Mathews, Carol A., Knowles, James A., Cox, Nancy J., and Scharf, Jeremiah M.
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Gilles ,Missing Heritability ,Autism ,Life Sciences ,Brain ,Neuropsychiatric Disorders ,Expression ,Social and Behavioral Sciences ,Tic Disorders ,Common Snps ,mental disorders ,Medicine and Health Sciences ,Complex Diseases ,Family - Abstract
The direct estimation of heritability from genome-wide common variant data as implemented in the program Genome-wide Complex Trait Analysis (GCTA) has provided a means to quantify heritability attributable to all interrogated variants. We have quantified the variance in liability to disease explained by all SNPs for two phenotypically-related neurobehavioral disorders, obsessive-compulsive disorder (OCD) and Tourette Syndrome (TS), using GCTA. Our analysis yielded a heritability point estimate of 0.58 (se = 0.09, p = 5.64e-12) for TS, and 0.37 (se = 0.07, p = 1.5e-07) for OCD. In addition, we conducted multiple genomic partitioning analyses to identify genomic elements that concentrate this heritability. We examined genomic architectures of TS and OCD by chromosome, MAF bin, and functional annotations. In addition, we assessed heritability for early onset and adult onset OCD. Among other notable results, we found that SNPs with a minor allele frequency of less than 5% accounted for 21% of the TS heritability and 0% of the OCD heritability. Additionally, we identified a significant contribution to TS and OCD heritability by variants significantly associated with gene expression in two regions of the brain (parietal cortex and cerebellum) for which we had available expression quantitative trait loci (eQTLs). Finally we analyzed the genetic correlation between TS and OCD, revealing a genetic correlation of 0.41 (se = 0.15, p = 0.002). These results are very close to previous heritability estimates for TS and OCD based on twin and family studies, suggesting that very little, if any, heritability is truly missing (i.e., unassayed) from TS and OCD GWAS studies of common variation. The results also indicate that there is some genetic overlap between these two phenotypically-related neuropsychiatric disorders, but suggest that the two disorders have distinct genetic architectures.
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- 2013
28. Application of Haralick texture features in brain [18F]-florbetapir positron emission tomography without reference region normalization.
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Campbell, Desmond L., Hakmook Kang, and Shokouhi, Sepideh
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ALZHEIMER'S disease ,POSITRON emission tomography ,T-test (Statistics) - Abstract
Objectives: Semi-quantitative image analysis methods in Alzheimer's Disease (AD) require normalization of positron emission tomography (PET) images. However, recent studies have found variabilities associated with reference region selection of amyloid PET images. Haralick features (HFs) generated from the Gray Level Co-occurrence Matrix (GLCM) quantify spatial characteristics of amyloid PET radiotracer uptake without the need for intensity normalization. The objective of this study is to calculate several HFs in different diagnostic groups and determine the group differences. Methods: All image and metadata were acquired through the Alzheimer's Disease Neuroimaging Initiative database. Subjects were grouped in three ways: by clinical diagnosis, by APOE e4 allele, and by Alzheimer's Disease Assessment Scale-cognitive subscale (ADAS-Cog) score. Several GLCM matrices were calculated for different direction and distances (1-4 mm) from multiple regions on PET images. The HFs, contrast, correlation, dissimilarity, energy, entropy, and homogeneity, were calculated from these GLCMs. Wilcoxon tests and Student t-tests were performed on Haralick features and standardized uptake value ratio (SUVR) values, respectively, to determine group differences. In addition to statistical testing, receiver operating characteristic (ROC) curves were generated to determine the discrimination performance of the selected regional HFs and the SUVR values. Results: Preliminary results from statistical testing indicate that HFs were capable of distinguishing groups at baseline and follow-up (false discovery rate corrected p<0.05) in particular regions at much higher occurrences than SUVR (81 of 252). Conversely, we observed nearly no significant differences between all groups within ROIs at baseline or follow-up utilizing SUVR. From the ROC analysis, we found that the Energy and Entropy offered the best performance to distinguish Normal versus mild cognitive impairment and ADAS-Cog negative versus ADAS-Cog positive groups. Conclusion: These results suggest that this technique could improve subject stratification in AD drug trials and help to evaluate the disease progression and treatment effects longitudinally without the disadvantages associated with intensity normalization. [ABSTRACT FROM AUTHOR]
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- 2017
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29. Sacral agenesis: a pilot whole exome sequencing and copy number study.
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Porsch, Robert M., Merello, Elisa, De Marco, Patrizia, Guo Cheng, Rodriguez, Laura, Manting So, Sham, Pak C., Tam, Paul K., Capra, Valeria, Cherny, Stacey S., Garcia-Barcelo, Maria-Mercè, and Campbell, Desmond D.
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CAUDAL regression syndrome ,CONGENITAL disorders ,SPINE ,SPINAL cord ,TYPE 1 diabetes ,DIABETES risk factors - Abstract
Background: Caudal regression syndrome (CRS) or sacral agenesis is a rare congenital disorder characterized by a constellation of congenital caudal anomalies affecting the caudal spine and spinal cord, the hindgut, the urogenital system, and the lower limbs. CRS is a complex condition, attributed to an abnormal development of the caudal mesoderm, likely caused by the effect of interacting genetic and environmental factors. A well-known risk factor is maternal type 1 diabetes. Method: Whole exome sequencing and copy number variation (CNV) analyses were conducted on 4 Caucasian trios to identify de novo and inherited rare mutations. Results: In this pilot study, exome sequencing and copy number variation (CNV) analyses implicate a number of candidate genes, including SPTBN5, MORN1, ZNF330, CLTCL1 and PDZD2. De novo mutations were found in SPTBN5, MORN1 and ZNF330 and inherited predicted damaging mutations in PDZD2 (homozygous) and CLTCL1 (compound heterozygous). Importantly, predicted damaging mutations in PTEN (heterozygous), in its direct regulator GLTSCR2 (compound heterozygous) and in VANGL1 (heterozygous) were identified. These genes had previously been linked with the CRS phenotype. Two CNV deletions, one de novo (chr3q13.13) and one homozygous (chr8p23.2), were detected in one of our CRS patients. These deletions overlapped with CNVs previously reported in patients with similar phenotype. Conclusion: Despite the genetic diversity and the complexity of the phenotype, this pilot study identified genetic features common across CRS patients. [ABSTRACT FROM AUTHOR]
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- 2016
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30. Genetic study of congenital bile-duct dilatation identifies de novo and inherited variants in functionally related genes.
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Wong, John K. L., Campbell, Desmond, Ngo, Ngoc Diem, Fanny Yeung, Guo Cheng, Tang, Clara S. M., Chung, Patrick H. Y., Ngoc Son Tran, Man-ting So, Cherny, Stacey S., Sham, Pak C., Tam, Paul K., and Garcia-Barcelo, Maria-Mercè
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HUMAN genetic variation , *DILATATION & curettage , *EXOMES , *LIVER cancer ,BILE duct surgery - Abstract
Background: Congenital dilatation of the bile-duct (CDD) is a rare, mostly sporadic, disorder that results in bile retention with severe associated complications. CDD affects mainly Asians. To our knowledge, no genetic study has ever been conducted. Methods: We aim to identify genetic risk factors by a "trio-based" exome-sequencing approach, whereby 31 CDD probands and their unaffected parents were exome-sequenced. Seven-hundred controls from the local population were used to detect gene-sets significantly enriched with rare variants in CDD patients. Results: Twenty-one predicted damaging de novo variants (DNVs; 4 protein truncating and 17 missense) were identified in several evolutionarily constrained genes (p < 0.01). Six genes carrying DNVs were associated with human developmental disorders involving epithelial, connective or bone morphologies (PXDN, RTEL1, ANKRD11, MAP2K1, CYLD, ACAN) and four linked with cholangio-and hepatocellular carcinomas (PIK3CA, TLN1 CYLD, MAP2K1). Importantly, CDD patients have an excess of DNVs in cancer-related genes (p < 0.025). Thirteen genes were recurrently mutated at different sites, forming compound heterozygotes or functionally related complexes within patients. Conclusions: Our data supports a strong genetic basis for CDD and show that CDD is not only genetically heterogeneous but also non-monogenic, requiring mutations in more than one genes for the disease to develop. The data is consistent with the rarity and sporadic presentation of CDD. [ABSTRACT FROM AUTHOR]
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- 2016
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31. Longitudinal Positron Emission Tomography in Preventive Alzheimer's Disease Drug Trials, Critical Barriers from Imaging Science Perspective.
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Shokouhi, Sepideh, Campbell, Desmond, Brill, Aaron B., and Gwirtsman, Harry E.
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ALZHEIMER'S disease , *POSITRON emission tomography , *PHARMACEUTICAL research , *DEMENTIA , *NUCLEAR medicine , *AMYLOID beta-protein - Abstract
Recent Alzheimer's trials have recruited cognitively normal people at risk for Alzheimer's dementia. Due to the lack of clinical symptoms in normal population, conventional clinical outcome measures are not suitable for these early trials. While several groups are developing new composite cognitive tests that could serve as potential outcome measures by detecting subtle cognitive changes in normal people, there is a need for longitudinal brain imaging techniques that can correlate with temporal changes in these new tests and provide additional objective measures of neuropathological changes in brain. Positron emission tomography (PET) is a nuclear medicine imaging procedure based on the measurement of annihilation photons after positron emission from radiolabeled molecules that allow tracking of biological processes in body, including the brain. PET is a well-established in vivo imaging modality in Alzheimer's disease diagnosis and research due to its capability of detecting abnormalities in three major hallmarks of this disease. These include (1) amyloid beta plaques; (2) neurofibrillary tau tangles and (3) decrease in neuronal activity due to loss of nerve cell connection and death. While semiquantitative PET imaging techniques are commonly used to set discrete cut-points to stratify abnormal levels of amyloid accumulation and neurodegeneration, they are suboptimal for detecting subtle longitudinal changes. In this study, we have identified and discussed four critical barriers in conventional longitudinal PET imaging that may be particularly relevant for early Alzheimer's disease studies. These include within and across subject heterogeneity of AD-affected brain regions, PET intensity normalization, neuronal compensations in early disease stages and cerebrovascular amyloid deposition. [ABSTRACT FROM AUTHOR]
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- 2016
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32. Cost effective assay choice for rare disease study designs.
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Campbell, Desmond D., Porsch, Robert M., Cherny, Stacey S., Capra, Valeria, Merello, Elisa, De Marco, Patrizia, Sham, Pak C., and Garcia-Barceló, Maria-Mercè
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DISEASE research , *ETIOLOGY of diseases , *HERITABILITY , *MEDICAL genetics - Abstract
High throughput assays tend to be expensive per subject. Often studies are limited not so much by the number of subjects available as by assay costs, making assay choice a critical issue. We have developed a framework for assay choice that maximises the number of true disease causing mechanisms 'seen', given limited resources. Although straightforward, some of the ramifications of our methodology run counter to received wisdom on study design. We illustrate our methodology with examples, and have built a website allowing calculation of quantities of interest to those designing rare disease studies. [ABSTRACT FROM AUTHOR]
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- 2015
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33. Evaluation of a compact, general-purpose Germanium Gamma Camera.
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Campbell, Desmond L., Hull, Ethan L., and Peterson, Todd E.
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- 2013
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34. Simulations investigating the impact of depth-of-interaction in Nuclear Breast Imaging with a dedicated germanium gamma camera.
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Campbell, Desmond L. and Peterson, Todd E.
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- 2012
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35. Performance characterization of a high-purity germanium detector for small-animal SPECT.
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Johnson, Lindsay C., Campbell, Desmond L., Ovchinnikov, Oleg S., and Peterson, Todd E.
- Abstract
We present an initial evaluation of a mechanically-cooled, high-purity germanium double-sided strip detector as a potential gamma camera for small-animal SPECT. It is 90 mm in diameter and 10 mm thick with two sets of 16 orthogonal strips that have a 4.75 mm width with a 5 mm pitch. A sub-strip interpolation method is used to bin the data at a pixel size of 0.53mm × 0.53mm, while it is also possible to estimate the depth of interaction based on CFD time differences between the anode and cathode. The system has an energy resolution of 0.92% at 140 keV and an intrinsic efficiency of 55.40% at 122 keV. Simulations suggest that increases in the efficiency should be possible by altering signal processing to include Compton events in which charge is collected on more than one strip. Integral uniformity in the central field of view for strips was found to be less than 1% in a flood-corrected flood while pixel-level uniformity was 2.98%. Due to the excellent energy resolution, the presence of a scattering medium did not greatly alter the FWHM or FWTM of a pinhole projection when compared to an acquisition without a scattering medium. This high-purity germanium system offers many desirable properties for small-animal SPECT. [ABSTRACT FROM PUBLISHER]
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- 2011
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36. Evaluating collimator designs for nuclear breast imaging with High-Purity Germanium detectors.
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Campbell, Desmond L. and Peterson, Todd E.
- Abstract
Nuclear breast imaging with specifically designed semiconductor gamma cameras can improve breast cancer detection. One benefit of semiconductor-based imaging systems is their superior Energy Resolution (ER). In previous simulation work, we observed that the superior ER of High-Purity Germanium (HPGe) could offer potential improvements in sensitivity and scatter rejection compared to Cadmium Zinc Telluride (CZT). In this work we conducted simulations with various collimation schemes to evaluate the possible imaging performance of an HPGe system with 1% ER at 140 keV. The objective was to investigate the influence of the collimation scheme on sensitivity and spatial resolution, and how these would translate to imaging performance. Using the Monte Carlo N-Particle (MCNP5) simulation package, we modeled a 10 mm thick HPGe detector with hexagonal-hole and registered square-hole collimators for the imaging of a breast/torso phantom with three spherical tumors. Simulated energy spectra were generated, and images were created with a ±1.25% energy window around the 140 keV photopeak. Scatter and torso fractions were calculated along with tumor contrast and relative sensitivity. Our results agree with previous literature suggesting that utilizing registered collimators yields large increases in sensitivity with similar resolutions and image quality to standard hexagonal-hole collimators. [ABSTRACT FROM PUBLISHER]
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- 2011
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37. CNV Analysis in Tourette Syndrome Implicates Large Genomic Rearrangements in COL8A1 and NRXN1.
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Nag, Abhishek, Bochukova, Elena G., Kremeyer, Barbara, Campbell, Desmond D., Muller, Heike, Valencia-Duarte, Ana V., Cardona, Julio, Rivas, Isabel C., Mesa, Sandra C., Cuartas, Mauricio, Garcia, Jharley, Bedoya, Gabriel, Cornejo, William, Herrera, Luis D., Romero, Roxana, Fournier, Eduardo, Reus, Victor I., Lowe, Thomas L., Farooqi, I. Sadaf, and Mathews, Carol A.
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TOURETTE syndrome ,NEUROBEHAVIORAL disorders ,GENE rearrangement ,NEURODEVELOPMENTAL treatment ,GENE amplification ,GENETIC mutation ,ETIOLOGY of diseases ,SINGLE nucleotide polymorphisms - Abstract
Tourette syndrome (TS) is a neuropsychiatric disorder with a strong genetic component. However, the genetic architecture of TS remains uncertain. Copy number variation (CNV) has been shown to contribute to the genetic make-up of several neurodevelopmental conditions, including schizophrenia and autism. Here we describe CNV calls using SNP chip genotype data from an initial sample of 210 TS cases and 285 controls ascertained in two Latin American populations. After extensive quality control, we found that cases (N = 179) have a significant excess (P = 0.006) of large CNV (>500 kb) calls compared to controls (N = 234). Amongst 24 large CNVs seen only in the cases, we observed four duplications of the COL8A1 gene region. We also found two cases with ∼400kb deletions involving NRXN1, a gene previously implicated in neurodevelopmental disorders, including TS. Follow-up using multiplex ligation-dependent probe amplification (and including 53 more TS cases) validated the CNV calls and identified additional patients with rearrangements in COL8A1 and NRXN1, but none in controls. Examination of available parents indicates that two out of three NRXN1 deletions detected in the TS cases are de-novo mutations. Our results are consistent with the proposal that rare CNVs play a role in TS aetiology and suggest a possible role for rearrangements in the COL8A1 and NRXN1 gene regions. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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38. Amerind Ancestry, Socioeconomic Status and the Genetics of Type 2 Diabetes in a Colombian Population.
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Campbell, Desmond D., Parra, Maria V., Duque, Constanza, Gallego, Natalia, Franco, Liliana, Tandon, Arti, Hünemeier, Tábita, Bortolini, Cátira, Villegas, Alberto, Bedoya, Gabriel, McCarthy, Mark I., Price, Alkes, Reich, David, and Ruiz-Linares, Andrés
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TYPE 2 diabetes , *INDIGENOUS peoples of the Americas , *SOCIOECONOMIC factors , *LOW-calorie diet , *EXERCISE , *GENEALOGY - Abstract
The "thrifty genotype" hypothesis proposes that the high prevalence of type 2 diabetes (T2D) in Native Americans and admixed Latin Americans has a genetic basis and reflects an evolutionary adaptation to a past low calorie/high exercise lifestyle. However, identification of the gene variants underpinning this hypothesis remains elusive. Here we assessed the role of Native American ancestry, socioeconomic status (SES) and 21 candidate gene loci in susceptibility to T2D in a sample of 876 T2D cases and 399 controls from Antioquia (Colombia). Although mean Native American ancestry is significantly higher in T2D cases than in controls (32% v 29%), this difference is confounded by the correlation of ancestry with SES, which is a stronger predictor of disease status. Nominally significant association (P<0.05) was observed for markers in: TCF7L2, RBMS1, CDKAL1, ZNF239, KCNQ1 and TCF1 and a significant bias (P<0.05) towards OR>1 was observed for markers selected from previous T2D genome-wide association studies, consistent with a role for Old World variants in susceptibility to T2D in Latin Americans. No association was found to the only known Native American-specific gene variant previously associated with T2D in a Mexican sample (rs9282541 in ABCA1). An admixture mapping scan with 1,536 ancestry informative markers (AIMs) did not identify genome regions with significant deviation of ancestry in Antioquia. Exclusion analysis indicates that this scan rules out ,95% of the genome as harboring loci with ancestry risk ratios <1.22 (at P < 0.05). [ABSTRACT FROM AUTHOR]
- Published
- 2012
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39. CYP2C19 genotype predicts steady state escitalopram concentration in GENDEP.
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Huezo-Diaz, Patricia, Perroud, Nader, Spencer, Edgar P, Smith, Rebecca, Sim, Sarah, Virding, Susanne, Uher, Rudolf, Gunasinghe, Cerisse, Gray, Jo, Campbell, Desmond, Hauser, Joanna, Maier, Wolfgang, Marusic, Andrej, Rietschel, Marcella, Perez, Jorge, Giovannini, Caterina, Mors, Ole, Mendlewicz, Julien, McGuffin, Peter, and Farmer, Anne E
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PSYCHOPHARMACOLOGICAL research ,ANTIDEPRESSANTS ,CYTOCHROME P-450 ,PHARMACOGENOMICS ,MENTAL illness - Abstract
In vitro work shows CYP2C19 and CYP2D6 contribute to the metabolism of escitalopram to its primary metabolite, N-desmethylescitalopram. We report the effect of CYP2C19 and CYP2D6 genotypes on steady state morning concentrations of escitalopram and N-desmethylescitalopram and the ratio of this metabolite to the parent drug in 196 adult patients with depression in GENDEP, a clinical pharmacogenomic trial. Subjects who had one CYP2D6 allele associated with intermediate metabolizer phenotype and one associated with poor metabolizer (i.e. IM/PM genotypic category) had a higher mean logarithm escitalopram concentration than CYP2D6 extensive metabolizers (EMs) (p = 0.004). Older age was also associated with higher concentrations of escitalopram. Covarying for CYP2D6 and age, we found those homozygous for the CYP2C19*17 allele associated with ultrarapid metabolizer (UM) phenotype had a significantly lower mean escitalopram concentration (2-fold, p = 0.0001) and a higher mean metabolic ratio (p = 0.0003) than EMs, while those homozygous for alleles conferring the PM phenotype had a higher mean escitalopram concentration than EMs (1.55-fold, p = 0.008). There was a significant overall association between CYP2C19 genotypic category and escitalopram concentration (p = 0.0003; p = 0.0012 Bonferroni corrected). In conclusion, we have demonstrated an association between CYP2C19 genotype, including the CYP2C19*17 allele, and steady state escitalopram concentration. [ABSTRACT FROM PUBLISHER]
- Published
- 2012
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40. Software for generating liability distributions for pedigrees conditional on their observed disease states and covariates.
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Campbell, Desmond D., Sham, Pak C., Knight, Jo, Wickham, Harvey, and Landau, Sabine
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- 2010
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41. Orbital Motion of Electrically Charged Spheres in Microgravity.
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Shubho Banerjee, Andring, Kevin, Campbell, Desmond, Janeski, John, Keedy, Daniel, Quinn, Sean, and Hoffmeister, Brent
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EXPERIMENTS ,AERONAUTICS education ,REDUCED gravity environments ,ELECTROSTATICS - Abstract
The article discusses the orbital motion of spheres in microgravity, after being electrically charged. It presents an experiment to demonstrate the orbit with the use of electrostatic forces. It is cited that the study used The Weightless Wonder, a specialized aircraft created by the National Aeronautics & Space Administration(NASA).
- Published
- 2008
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42. Partitioning the Heritability of Tourette Syndrome and Obsessive Compulsive Disorder Reveals Differences in Genetic Architecture
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Davis, Lea K., Yu, Dongmei, Keenan, Clare L., Gamazon, Eric R., Konkashbaev, Anuar I., Derks, Eske M., Neale, Benjamin M., Yang, Jian, Lee, S. Hong, Evans, Patrick, Barr, Cathy L., Bellodi, Laura, Benarroch, Fortu, Berrio, Gabriel Bedoya, Bienvenu, Oscar J., Bloch, Michael H., Blom, Rianne M., Bruun, Ruth D., Budman, Cathy L., Camarena, Beatriz, Campbell, Desmond, Cappi, Carolina, Cardona Silgado, Julio C., Cath, Danielle C., Cavallini, Maria C., Chavira, Denise A., Chouinard, Sylvain, Conti, David V., Cook, Edwin H., Coric, Vladimir, Cullen, Bernadette A., Deforce, Dieter, Delorme, Richard, Dion, Yves, Edlund, Christopher K., Egberts, Karin, Falkai, Peter, Fernandez, Thomas V., Gallagher, Patience J., Garrido, Helena, Geller, Daniel, Girard, Simon L., Grabe, Hans J., Grados, Marco A., Greenberg, Benjamin D., Gross-Tsur, Varda, Haddad, Stephen, Heiman, Gary A., Hemmings, Sian M. J., Hounie, Ana G., Illmann, Cornelia, Jankovic, Joseph, Jenike, Michael A., Kennedy, James L., King, Robert A., Kremeyer, Barbara, Kurlan, Roger, Lanzagorta, Nuria, Leboyer, Marion, Leckman, James F., Lennertz, Leonhard, Liu, Chunyu, Lochner, Christine, Lowe, Thomas L., Macciardi, Fabio, McCracken, James T., McGrath, Lauren M., Mesa Restrepo, Sandra C., Moessner, Rainald, Morgan, Jubel, Muller, Heike, Murphy, Dennis L., Naarden, Allan L., Ochoa, William Cornejo, Ophoff, Roel A., Osiecki, Lisa, Pakstis, Andrew J., Pato, Michele T., Pato, Carlos N., Piacentini, John, Pittenger, Christopher, Pollak, Yehuda, Rauch, Scott L., Renner, Tobias J., Reus, Victor I., Richter, Margaret A., Riddle, Mark A., Robertson, Mary M., Romero, Roxana, Rosàrio, Maria C., Rosenberg, David, Rouleau, Guy A., Ruhrmann, Stephan, Ruiz-Linares, Andres, Sampaio, Aline S., Samuels, Jack, Sandor, Paul, Sheppard, Brooke, Singer, Harvey S., Smit, Jan H., Stein, Dan J., Strengman, E., Tischfield, Jay A., Valencia Duarte, Ana V., Vallada, Homero, Van Nieuwerburgh, Filip, Veenstra-VanderWeele, Jeremy, Walitza, Susanne, Wang, Ying, Wendland, Jens R., Westenberg, Herman G. M., Shugart, Yin Yao, Miguel, Euripedes C., McMahon, William, Wagner, Michael, Nicolini, Humberto, Posthuma, Danielle, Hanna, Gregory L., Heutink, Peter, Denys, Damiaan, Arnold, Paul D., Oostra, Ben A., Nestadt, Gerald, Freimer, Nelson B., Pauls, David L., Wray, Naomi R., Stewart, S. Evelyn, Mathews, Carol A., Knowles, James A., Cox, Nancy J., and Scharf, Jeremiah M.
- Abstract
The direct estimation of heritability from genome-wide common variant data as implemented in the program Genome-wide Complex Trait Analysis (GCTA) has provided a means to quantify heritability attributable to all interrogated variants. We have quantified the variance in liability to disease explained by all SNPs for two phenotypically-related neurobehavioral disorders, obsessive-compulsive disorder (OCD) and Tourette Syndrome (TS), using GCTA. Our analysis yielded a heritability point estimate of 0.58 (se = 0.09, p = 5.64e-12) for TS, and 0.37 (se = 0.07, p = 1.5e-07) for OCD. In addition, we conducted multiple genomic partitioning analyses to identify genomic elements that concentrate this heritability. We examined genomic architectures of TS and OCD by chromosome, MAF bin, and functional annotations. In addition, we assessed heritability for early onset and adult onset OCD. Among other notable results, we found that SNPs with a minor allele frequency of less than 5% accounted for 21% of the TS heritability and 0% of the OCD heritability. Additionally, we identified a significant contribution to TS and OCD heritability by variants significantly associated with gene expression in two regions of the brain (parietal cortex and cerebellum) for which we had available expression quantitative trait loci (eQTLs). Finally we analyzed the genetic correlation between TS and OCD, revealing a genetic correlation of 0.41 (se = 0.15, p = 0.002). These results are very close to previous heritability estimates for TS and OCD based on twin and family studies, suggesting that very little, if any, heritability is truly missing (i.e., unassayed) from TS and OCD GWAS studies of common variation. The results also indicate that there is some genetic overlap between these two phenotypically-related neuropsychiatric disorders, but suggest that the two disorders have distinct genetic architectures.
- Published
- 2013
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43. Reconstructing Native American Population History
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Reich, David Emil, Patterson, Nick, Campbell, Desmond, Tandon, Arti, Mazieres, Stéphane, Ray, Nicolas, Parra, Maria V., Rojas, Winston, Duque, Constanza, Mesa, Natalia, García, Luis F., Triana, Omar, Blair, Silvia, Maestre, Amanda, Dib, Juan C., Bravi, Claudio M., Bailliet, Graciela, Corach, Daniel, Hünemeier, Tábita, Bortolini, Maria-Cátira, Salzano, Francisco M., Petzl-Erler, María Luiza, Acuña-Alonzo, Victor, Aguilar-Salinas, Carlos, Canizales-Quinteros, Samuel, Tusié-Luna, Teresa, Riba, Laura, Rodríguez-Cruz, Maricela, Lopez-Alarcón, Mardia, Coral-Vazquez, Ramón, Canto-Cetina, Thelma, Silva-Zolezzi, Irma, Fernandez-Lopez, Juan Carlos, Contreras, Alejandra V., Jimenez-Sanchez, Gerardo, Gómez-Vázquez, María José, Molina, Julio, Carracedo, Ángel, Salas, Antonio, Gallo, Carla, Poletti, Giovanni, Witonsky, David B., Alkorta-Aranburu, Gorka, Sukernik, Rem I., Osipova, Ludmila, Fedorova, Sardana, Vasquez, René, Villena, Mercedes, Moreau, Claudia, Barrantes, Ramiro, Pauls, David L., Excoffier, Laurent, Bedoya, Gabriel, Rothhammer, Francisco, Dugoujon, Jean Michel, Larrouy, Georges, Klitz, William, Labuda, Damian, Kidd, Judith, Kidd, Kenneth, Rienzo, Anna Di, Freimer, Nelson B., Price, Alkes, and Ruiz-Linares, Andrés
- Abstract
The peopling of the Americas has been the subject of extensive genetic, archaeological and linguistic research; however, central questions remain unresolved1–5. One contentious issue is whether the settlement occurred via a single6–8 or multiple streams of migration from Siberia9–15. The pattern of dispersals within the Americas is also poorly understood. To address these questions at higher resolution than was previously possible, we assembled data from 52 Native American and 17 Siberian groups genotyped at 364,470 single nucleotide polymorphisms. We show that Native Americans descend from at least three streams of Asian gene flow. Most descend entirely from a single ancestral population that we call “First American”. However, speakers of Eskimo-Aleut languages from the Arctic inherit almost half their ancestry from a second stream of Asian gene flow, and the Na-Dene-speaking Chipewyan from Canada inherit roughly one-tenth of their ancestry from a third stream. We show that the initial peopling followed a southward expansion facilitated by the coast, with sequential population splits and little gene flow after divergence, especially in South America. A major exception is in Chibchan-speakers on both sides of the Panama Isthmus, who have ancestry from both North and South America.
- Published
- 2013
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44. Genome-wide association study of Tourette Syndrome
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Scharf, Jeremiah M., Yu, Dongmei, Mathews, Carol A., Neale, Benjamin M., Stewart, S. Evelyn, Fagerness, Jesen A, Evans, Patrick, Gamazon, Eric, Edlund, Christopher K., Service, Susan, Tikhomirov, Anna, Osiecki, Lisa, Illmann, Cornelia, Pluzhnikov, Anna, Konkashbaev, Anuar, Davis, Lea K, Han, Buhm, Crane, Jacquelyn, Moorjani, Priya, Crenshaw, Andrew T., Parkin, Melissa A., Reus, Victor I., Lowe, Thomas L., Rangel-Lugo, Martha, Chouinard, Sylvain, Dion, Yves, Girard, Simon, Cath, Danielle C, Smit, Jan H, King, Robert A., Fernandez, Thomas, Leckman, James F., Kidd, Kenneth K., Kidd, Judith R., Pakstis, Andrew J., State, Matthew, Herrera, Luis Diego, Romero, Roxana, Fournier, Eduardo, Sandor, Paul, Barr, Cathy L, Phan, Nam, Gross-Tsur, Varda, Benarroch, Fortu, Pollak, Yehuda, Budman, Cathy L., Bruun, Ruth D., Erenberg, Gerald, Naarden, Allan L, Lee, Paul C, Weiss, Nicholas, Kremeyer, Barbara, Berrío, Gabriel Bedoya, Campbell, Desmond, Silgado, Julio C. Cardona, Ochoa, William Cornejo, Restrepo, Sandra C. Mesa, Muller, Heike, Duarte, Ana V. Valencia, Lyon, Gholson J, Leppert, Mark, Morgan, Jubel, Weiss, Robert, Grados, Marco A., Anderson, Kelley, Davarya, Sarah, Singer, Harvey, Walkup, John, Jankovic, Joseph, Tischfield, Jay A., Heiman, Gary A., Gilbert, Donald L., Hoekstra, Pieter J., Robertson, Mary M., Kurlan, Roger, Liu, Chunyu, Gibbs, J. Raphael, Singleton, Andrew, Hardy, John, Strengman, Eric, Ophoff, Roel, Wagner, Michael, Moessner, Rainald, Mirel, Daniel B., Posthuma, Danielle, Sabatti, Chiara, Eskin, Eleazar, Conti, David V., Knowles, James A., Ruiz-Linares, Andres, Rouleau, Guy A., Purcell, Shaun, Heutink, Peter, Oostra, Ben A., McMahon, William, Freimer, Nelson, Cox, Nancy J., and Pauls, David L.
- Subjects
Tourette Syndrome ,tics ,genetics ,GWAS ,neurodevelopmental disorder - Abstract
Tourette Syndrome (TS) is a developmental disorder that has one of the highest familial recurrence rates among neuropsychiatric diseases with complex inheritance. However, the identification of definitive TS susceptibility genes remains elusive. Here, we report the first genome-wide association study (GWAS) of TS in 1285 cases and 4964 ancestry-matched controls of European ancestry, including two European-derived population isolates, Ashkenazi Jews from North America and Israel, and French Canadians from Quebec, Canada. In a primary meta-analysis of GWAS data from these European ancestry samples, no markers achieved a genome-wide threshold of significance (p<5 × 10−8); the top signal was found in rs7868992 on chromosome 9q32 within COL27A1 (p=1.85 × 10−6). A secondary analysis including an additional 211 cases and 285 controls from two closely-related Latin-American population isolates from the Central Valley of Costa Rica and Antioquia, Colombia also identified rs7868992 as the top signal (p=3.6 × 10−7 for the combined sample of 1496 cases and 5249 controls following imputation with 1000 Genomes data). This study lays the groundwork for the eventual identification of common TS susceptibility variants in larger cohorts and helps to provide a more complete understanding of the full genetic architecture of this disorder.
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- 2012
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45. Error in sample size formula.
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Dedalus Campbell, Desmond
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- *
LETTERS to the editor , *ERROR analysis in mathematics , *SAMPLE size (Statistics) , *ESTIMATION theory , *STATISTICAL power analysis , *ANALYSIS of variance - Published
- 2014
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46. Corrigendum: Reconstructing Native American population history.
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Reich, David, Patterson, Nick, Campbell, Desmond, Tandon, Arti, Mazieres, Stéphane, Ray, Nicolas, Parra, Maria V., Rojas, Winston, Duque, Constanza, Mesa, Natalia, García, Luis F., Triana, Omar, Blair, Silvia, Maestre, Amanda, Dib, Juan C., Bravi, Claudio M., Bailliet, Graciela, Corach, Daniel, Hünemeier, Tábita, and Bortolini, Maria Cátira
- Subjects
MANUSCRIPTS ,IMMUNOGLOBULIN allotypes - Abstract
A correction to the article "Reconstructing Native American population history" that was published in the 2012 issue is presented.
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- 2012
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47. CNV Analysis in Tourette Syndrome Implicates Large Genomic Rearrangements in COL8A1 and NRXN1.
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Nag, Abhishek, Bochukova, Elena G., Kremeyer, Barbara, Campbell, Desmond D., Muller, Heike, Valencia-Duarte, Ana V., Cardona, Julio, Rivas, Isabel C., Mesa, Sandra C., Cuartas, Mauricio, Garcia, Jharley, Bedoya, Gabriel, Cornejo, William, Herrera, Luis D., Romero, Roxana, Fournier, Eduardo, Reus, Victor I., Lowe, Thomas L., Farooqi, I. Sadaf, and Mathews, Carol A.
- Subjects
- *
TOURETTE syndrome , *NEUROBEHAVIORAL disorders , *GENE rearrangement , *NEURODEVELOPMENTAL treatment , *GENE amplification , *GENETIC mutation , *ETIOLOGY of diseases , *SINGLE nucleotide polymorphisms - Abstract
Tourette syndrome (TS) is a neuropsychiatric disorder with a strong genetic component. However, the genetic architecture of TS remains uncertain. Copy number variation (CNV) has been shown to contribute to the genetic make-up of several neurodevelopmental conditions, including schizophrenia and autism. Here we describe CNV calls using SNP chip genotype data from an initial sample of 210 TS cases and 285 controls ascertained in two Latin American populations. After extensive quality control, we found that cases (N = 179) have a significant excess (P = 0.006) of large CNV (>500 kb) calls compared to controls (N = 234). Amongst 24 large CNVs seen only in the cases, we observed four duplications of the COL8A1 gene region. We also found two cases with ∼400kb deletions involving NRXN1, a gene previously implicated in neurodevelopmental disorders, including TS. Follow-up using multiplex ligation-dependent probe amplification (and including 53 more TS cases) validated the CNV calls and identified additional patients with rearrangements in COL8A1 and NRXN1, but none in controls. Examination of available parents indicates that two out of three NRXN1 deletions detected in the TS cases are de-novo mutations. Our results are consistent with the proposal that rare CNVs play a role in TS aetiology and suggest a possible role for rearrangements in the COL8A1 and NRXN1 gene regions. [ABSTRACT FROM AUTHOR]
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- 2013
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48. Linkage to Chromosome 1p36 for Attention-Deficit/Hyperactivity Disorder Traits in School and Home Settings
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Zhou, Kaixin, Asherson, Philip, Sham, Pak, Franke, Barbara, Anney, Richard J.L., Buitelaar, Jan, Ebstein, Richard, Gill, Michael, Brookes, Keeley, Buschgens, Cathelijne, Campbell, Desmond, Chen, Wai, Christiansen, Hanna, Fliers, Ellen, Gabriëls, Isabel, Johansson, Lena, Marco, Rafaela, Mulas, Fernando, Müller, Ueli, and Mulligan, Aisling
- Subjects
- *
ATTENTION-deficit hyperactivity disorder , *LINKAGE (Genetics) , *CHROMOSOMES , *PHENOTYPES , *NUCLEOTIDES , *GENETIC polymorphisms , *DYSLEXIA - Abstract
Background: Limited success has been achieved through previous attention-deficit/hyperactivity disorder (ADHD) linkage scans, which were all designed to map genes underlying the dichotomous phenotype. The International Multi-centre ADHD Genetics (IMAGE) project performed a whole genome linkage scan specifically designed to map ADHD quantitative trait loci (QTL). Methods: A set of 1094 single selected Caucasian ADHD nuclear families was genotyped on a highly accurate and informative single nucleotide polymorphism (SNP) panel. Two quantitative traits measuring the children''s symptoms in home and school settings were collected and standardized according to a population sample of 8000 children to reflect the developmental nature and gender prevalence difference of ADHD. Univariate linkage test was performed on both traits and their mean score. Results: A significant common linkage locus was found at chromosome 1p36 with a locus-specific heritability of 5.1% and a genomewide empirical p < .04. Setting-specific suggestive linkage signals were also found: logarithm of odds (LOD) = 2.2 at 9p23 for home trait and LOD = 2.6 at 11q21 for school trait. Conclusions: These results indicate that given large samples with proper phenotypic measures, searching for ADHD genes with a QTL strategy is an important alternative to using the clinical diagnosis. The fact that our linkage region 1p36 overlaps with the dyslexia QTL DYX8 further suggests it is potentially a pleiotropic locus for ADHD and dyslexia. [Copyright &y& Elsevier]
- Published
- 2008
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49. A workshop to enrich physiological understanding through hands-on learning about mitochondria-endoplasmic reticulum contact sites.
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Vue Z, Vang C, Wanjalla CN, Marshall AG, Neikirk K, Stephens D, Perales S, Garza-Lopez E, Beasley HK, Kirabo A, Doe YJ, Campbell D, Fears L, Alghanem A, Scudese E, Owens B, Morton DJ, Williams CR, Conley Z, and Antentor H Jr
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- Humans, Adolescent, Problem-Based Learning methods, Students, Female, Male, Comprehension, Learning physiology, Mitochondria Associated Membranes, Mitochondria physiology, Mitochondria metabolism, Endoplasmic Reticulum physiology, Physiology education
- Abstract
Physiology is an important field for students to gain a better understanding of biological mechanisms. Yet, many students often find it difficult to learn from lectures, resulting in poor retention. Here, we utilize a learning workshop model to teach students at different levels ranging from middle school to undergraduate. We specifically designed a workshop to teach students about mitochondria - endoplasmic reticulum contact (MERC) sites. The workshop was implemented for middle school students in a laboratory setting that incorporated a pretest to gauge prior knowledge, instructional time, hands-on activities, interactive learning from experts, and a posttest. We observed that the students remained engaged during the session of interactive methods, teamed with their peers to complete tasks, and delighted in the experience. Implications for the design of future physiological workshops are further offered. NEW & NOTEWORTHY This manuscript offers a design for a workshop that utilizes blended learning to engage middle school, high school, and undergraduate students while teaching them about mitochondria-endoplasmic reticulum contact sites.
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- 2024
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50. A workshop on mitochondria for students to improve understanding of science and hypothesis forming.
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Marshall AG, Neikirk K, Stephens D, Garza-Lopez E, Vue Z, Beasley HK, Janumyan Doe Y, Campbell D, Fears L, Alghanem A, Spencer EC, Scudese E, Owens B, Vang C, Morton DJ, Conley Z, and Hinton A Jr
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- Humans, Technology education, Cognition, Mitochondria, Students, Engineering education
- Abstract
There remains a clear deficiency in recruiting middle school students in science, technology, engineering, mathematics, and medicine fields, especially for those students entering physiology from underrepresented backgrounds. A large part of this may be arising from a disconnect between how science is typically practiced at a collegiate and K-12 level. Here, we have envisioned mitochondria and their diverse subcellular structures as an involver for middle school students. We present the framework for a workshop that familiarizes students with mitochondria, employing three-dimensional visual-spatial learning and real-time critical thinking and hypothesis forming. This workshop had the goal of familiarizing middle school students with the unique challenges the field currently faces and better understanding the actuality of being a scientist through critical analysis including hypothesis forming. Findings show that middle school students responded positively to the program and felt as though they had a better understanding of mitochondria. Future implications for hands-on programs to involve underrepresented students in science are discussed, as well as potential considerations to adapt it for high school and undergraduate students. NEW & NOTEWORTHY Here we employ a workshop that utilizes blended and tactile learning to teach middle schoolers about mitochondrial structure. By creating an approachable and fun workshop that can be utilized for middle school students, we seek to encourage them to join a career in physiology.
- Published
- 2023
- Full Text
- View/download PDF
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