131 results on '"Boutté, Yohann"'
Search Results
2. Plant and algal lipidomes: Analysis, composition, and their societal significance
- Author
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Jouhet, Juliette, Alves, Eliana, Boutté, Yohann, Darnet, Sylvain, Domergue, Frédéric, Durand, Thierry, Fischer, Pauline, Fouillen, Laetitia, Grube, Mara, Joubès, Jérôme, Kalnenieks, Uldis, Kargul, Joanna M., Khozin-Goldberg, Inna, Leblanc, Catherine, Letsiou, Sophia, Lupette, Josselin, Markov, Gabriel V., Medina, Isabel, Melo, Tânia, Mojzeš, Peter, Momchilova, Svetlana, Mongrand, Sébastien, Moreira, Ana S.P., Neves, Bruna B., Oger, Camille, Rey, Felisa, Santaeufemia, Sergio, Schaller, Hubert, Schleyer, Guy, Tietel, Zipora, Zammit, Gabrielle, Ziv, Carmit, and Domingues, Rosário
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- 2024
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3. Genome editing of a rice CDP-DAG synthase confers multipathogen resistance
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Sha, Gan, Sun, Peng, Kong, Xiaojing, Han, Xinyu, Sun, Qiping, Fouillen, Laetitia, Zhao, Juan, Li, Yun, Yang, Lei, Wang, Yin, Gong, Qiuwen, Zhou, Yaru, Zhou, Wenqing, Jain, Rashmi, Gao, Jie, Huang, Renliang, Chen, Xiaoyang, Zheng, Lu, Zhang, Wanying, Qin, Ziting, Zhou, Qi, Zeng, Qingdong, Xie, Kabin, Xu, Jiandi, Chiu, Tsan-Yu, Guo, Liang, Mortimer, Jenny C., Boutté, Yohann, Li, Qiang, Kang, Zhensheng, Ronald, Pamela C., and Li, Guotian
- Published
- 2023
- Full Text
- View/download PDF
4. The function of sphingolipids in membrane trafficking and cell signaling in plants, in comparison with yeast and animal cells
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Fougère, Louise, Mongrand, Sebastien, and Boutté, Yohann
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- 2024
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- View/download PDF
5. PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation
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Trinh, Duy-Chi, Lavenus, Julien, Goh, Tatsuaki, Boutté, Yohann, Drogue, Quentin, Vaissayre, Virginie, Tellier, Frédérique, Lucas, Mikaël, Voß, Ute, Gantet, Pascal, Faure, Jean-Denis, Dussert, Stéphane, Fukaki, Hidehiro, Bennett, Malcolm J., Laplaze, Laurent, and Guyomarc’h, Soazig
- Published
- 2019
6. Sphingolipids mediate polar sorting of PIN2 through phosphoinositide consumption at the trans-Golgi network
- Author
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Ito, Yoko, Esnay, Nicolas, Platre, Matthieu Pierre, Wattelet-Boyer, Valérie, Noack, Lise C., Fougère, Louise, Menzel, Wilhelm, Claverol, Stéphane, Fouillen, Laetitia, Moreau, Patrick, Jaillais, Yvon, and Boutté, Yohann
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- 2021
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7. Ethylene Regulates Differential Growth via BIG ARF-GEF-Dependent Post-Golgi Secretory Trafficking in Arabidopsis
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Jonsson, Kristoffer, Boutté, Yohann, Singh, Rajesh Kumar, Gendre, Delphine, and Bhalerao, Rishikesh P.
- Published
- 2017
8. A global LC–MS2‐based methodology to identify and quantify anionic phospholipids in plant samples.
- Author
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Genva, Manon, Fougère, Louise, Bahammou, Delphine, Mongrand, Sébastien, Boutté, Yohann, and Fouillen, Laetitia
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HIGH performance liquid chromatography ,OCHRATOXINS ,SEPARATION of gases ,GAS chromatography ,CELL differentiation ,PLANT cells & tissues ,THIN layer chromatography ,PHOSPHOLIPIDS - Abstract
SUMMARY: Anionic phospholipids (PS, PA, PI, PIPs) are low‐abundant phospholipids with impactful functions in cell signaling, membrane trafficking and cell differentiation processes. They can be quickly metabolized and can transiently accumulate at defined spots within the cell or an organ to respond to physiological or environmental stimuli. As even a small change in their composition profile will produce a significant effect on biological processes, it is crucial to develop a sensitive and optimized analytical method to accurately detect and quantify them. While thin‐layer chromatography (TLC) separation coupled with gas chromatography (GC) detection methods already exist, they do not allow for precise, sensitive, and accurate quantification of all anionic phospholipid species. Here we developed a method based on high‐performance liquid chromatography (HPLC) combined with two‐dimensional mass spectrometry (MS2) by MRM mode to detect and quantify all molecular species and classes of anionic phospholipids in one shot. This method is based on a derivatization step by methylation that greatly enhances the ionization, the separation of each peak, the peak resolution as well as the limit of detection and quantification for each individual molecular species, and more particularly for PA and PS. Our method universally works in various plant samples. Remarkably, we identified that PS is enriched with very long chain fatty acids in the roots but not in aerial organs of Arabidopsis thaliana. Our work thus paves the way for new studies on how the composition of anionic lipids is finely tuned during plant development and environmental responses. Significance Statement: While anionic phospholipids have key functions in plant cellular processes, their low concentration in biological samples and their low stability during the analysis complicate their quantification. Here, we present the first one‐shot analytical method for the profiling and quantification of all anionic phospholipid classes and species from plant tissues with unprecedented sensitivity. This method opens the way to future studies requiring a fine quantification of anionic phospholipids to understand their role in plant cell processes. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Sterol Methyl Oxidases Affect Embryo Development via Auxin-Associated Mechanisms
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Zhang, Xia, Sun, Shuangli, Nie, Xiang, Boutté, Yohann, Grison, Magali, Li, Panpan, Kuang, Susu, and Men, Shuzhen
- Published
- 2016
10. Subcellular localization and trafficking of phytolongins (non-SNARE longins) in the plant secretory pathway
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de Marcos Lousa, Carine, Soubeyrand, Eric, Bolognese, Paolo, Wattelet-Boyer, Valerie, Bouyssou, Guillaume, Marais, Claireline, Boutté, Yohann, Filippini, Francesco, and Moreau, Patrick
- Published
- 2016
11. Specific Membrane Lipid Composition Is Important for Plasmodesmata Function in Arabidopsis
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Grison, Magali S., Brocard, Lysiane, Fouillen, Laetitia, Nicolas, William, Wewer, Vera, Dörmann, Peter, Nacir, Houda, Benitez-Alfonso, Yoselin, Claverol, Stéphane, Germain, Véronique, Boutté, Yohann, Mongrand, Sébastien, and Bayer, Emmanuelle M.
- Published
- 2015
12. The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana
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Marais, Claireline, Wattelet-Boyer, Valérie, Bouyssou, Guillaume, Hocquellet, Agnès, Dupuy, Jean-William, Batailler, Brigitte, Brocard, Lysiane, Boutté, Yohann, Maneta-Peyret, Lilly, and Moreau, Patrick
- Published
- 2015
13. Endoplasmic reticulum stress controls PIN-LIKES abundance and thereby growth adaptation.
- Author
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Waidmann, Sascha, Béziat, Chloé, Da Silva Santos, Jonathan Ferreira, Feraru, Elena, Feraru, Mugurel I., Lin Sun, Noura, Seinab, Boutté, Yohann, and Kleine-Vehn, Jürgen
- Subjects
ENDOPLASMIC reticulum ,MEMBRANE lipids ,PLANT adaptation ,ARABIDOPSIS thaliana ,PLANT growth - Abstract
Extreme environmental conditions eventually limit plant growth [J. R. Dinneny, Annu. Rev. Cell Dev. Biol. 35, 1-19 (2019), N. Gigli-Bisceglia, C. Testerink, Curr. Opin. Plant Biol. 64, 102120 (2021)]. Here, we reveal a mechanism that enables multiple external cues to get integrated into auxin-dependent growth programs in Arabidopsis thaliana. Our forward genetics approach on dark-grown hypocotyls uncovered that an imbalance in membrane lipids enhances the protein abundance of PIN-LIKES (PILS) [E. Barbez et al., Nature 485, 119 (2012)] auxin transport facilitators at the endoplasmic reticulum (ER), which thereby limits nuclear auxin signaling and growth rates. We show that this subcellular response relates to ER stress signaling, which directly impacts PILS protein turnover in a tissue-dependent manner. This mechanism allows PILS proteins to integrate environmental input with phytohormone auxin signaling, contributing to stress-induced growth adaptation in plants. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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14. ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation
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Boutté, Yohann, Jonsson, Kristoffer, McFarlane, Heather E., Johnson, Errin, Gendre, Delphine, Swarup, Ranjan, Friml, Jiří, Samuels, Lacey, Robert, Stéphanie, and Bhalerao, Rishikesh P.
- Published
- 2013
15. The Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in Arabidopsis
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Viotti, Corrado, Krüger, Falco, Krebs, Melanie, Neubert, Christoph, Fink, Fabian, Lupanga, Upendo, Scheuring, David, Boutté, Yohann, Frescatada-Rosa, Márcia, Wolfenstetter, Susanne, Sauer, Norbert, Hillmer, Stefan, Grebe, Markus, and Schumacher, Karin
- Published
- 2013
16. Journey to the cell surface—the central role of the trans-Golgi network in plants
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Gendre, Delphine, Jonsson, Kristoffer, Boutté, Yohann, and Bhalerao, Rishikesh P.
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- 2015
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17. Conserved Arabidopsis ECHIDNA protein mediates trans-Golgi-network trafficking and cell elongation
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Gendre, Delphine, Oh, Jaesung, Boutté, Yohann, Best, Jacob G., Samuels, Lacey, Nilsson, Robert, Uemura, Tomohiro, Marchant, Alan, Bennett, Malcolm J., Grebe, Markus, Bhalerao, Rishikesh P., and Chrispeels, Maarten J.
- Published
- 2011
18. Endocytosis restricts Arabidopsis KNOLLE syntaxin to the cell division plane during late cytokinesis
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Boutté, Yohann, Frescatada‐Rosa, Márcia, Men, Shuzhen, Chow, Cheung‐Ming, Ebine, Kazuo, Gustavsson, Anna, Johansson, Lenore, Ueda, Takashi, Moore, Ian, Jürgens, Gerd, and Grebe, Markus
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- 2010
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19. Lysophosphatidic acid acyltransferases: a link with intracellular protein trafficking in Arabidopsis root cells?
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Wattelet-Boyer, Valérie, Guédard, Marina Le, Dittrich-Domergue, Franziska, Maneta-Peyret, Lilly, Kriechbaumer, Verena, Boutté, Yohann, Bessoule, Jean-Jacques, and Moreau, Patrick
- Subjects
LYSOPHOSPHOLIPIDS ,ARABIDOPSIS proteins ,INTRACELLULAR membranes ,PHOSPHATIDIC acids ,LIPID analysis ,AQUAPORINS ,ACYLTRANSFERASES - Abstract
Phosphatidic acid (PA) and lysophosphatidic acid acyltransferases (LPAATs) might be critical for the secretory pathway. Four extra-plastidial LPAATs (LPAAT2, 3, 4, and 5) were identified in Arabidopsis thaliana. These AtLPAATs display a specific enzymatic activity converting lysophosphatidic acid to PA and are located in the endomembrane system. We investigate a putative role for AtLPAATs 3, 4, and 5 in the secretory pathway of root cells through genetical (knockout mutants), biochemical (activity inhibitor, lipid analyses), and imaging (live and immuno-confocal microscopy) approaches. Treating a lpaat4;lpaat5 double mutant with the LPAAT inhibitor CI976 produced a significant decrease in primary root growth. The trafficking of the auxin transporter PIN2 was disturbed in this lpaat4;lpaat5 double mutant treated with CI976, whereas trafficking of H
+ -ATPases was unaffected. The lpaat4;lpaat5 double mutant is sensitive to salt stress, and the trafficking of the aquaporin PIP2;7 to the plasma membrane in the lpaat4;lpaat5 double mutant treated with CI976 was reduced. We measured the amounts of neo-synthesized PA in roots, and found a decrease in PA only in the lpaat4;lpaat5 double mutant treated with CI976, suggesting that the protein trafficking impairment was due to a critical PA concentration threshold. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
20. Arabidopsis choline transporter-like 1 (CTL1) regulates secretory trafficking of auxin transporters to control seedling growth
- Author
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Boutté, Yohann
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B Vitamins ,Cell Physiology ,Physiology ,Cell Membranes ,Plant Science ,Cholines ,Biochemistry ,Proof of Concept Study ,Choline ,Membrane Lipids ,Medicine and Health Sciences ,Homeostasis ,Animals ,Humans ,Vesicles ,Plant Hormones ,Phospholipids ,Organic Compounds ,Plant Biochemistry ,Organic Chemistry ,Chemical Compounds ,Biology and Life Sciences ,Membrane Transport Proteins ,Biological Transport ,Vitamins ,Cell Biology ,Intracellular Membranes ,Lipids ,Primer ,Hormones ,Acetylcholine ,Cell Compartmentation ,Chemistry ,Membrane Trafficking ,Physical Sciences ,Auxins ,lipids (amino acids, peptides, and proteins) ,Cellular Structures and Organelles ,Physiological Processes ,trans-Golgi Network - Abstract
Lipids are essential components of biological membranes that present a wide diversity in eukaryotic cells. Recent impressive advances in lipid biochemistry and biophysics have enabled a refocus of our view of lipids as functional units for cellular activity. However, the gap between molecular and cellular processes remains to be bridged. Here, 2 papers meet the burden of proof that choline transporters participate in local lipid composition modifications at the trans-Golgi network, an intracellular compartment that serves as the main sorting station in the cell. Localization of choline transporters to this precise compartment could be a way for plant cells to quickly modify the membrane lipid composition and asymmetry during both the allocation of cargos and the recruitment of trafficking machineries into distinct subcellular pathways.
- Published
- 2018
21. Plant lipids: Key players of plasma membrane organization and function
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Cassim, Adiilah, Gouguet, Paul, Gronnier, Julien, Laurent, Nelson, Germain, Véronique, Grison, Magali, Boutté, Yohann, Gerbeau-Pissot, Patricia, Simon-Plas, Françoise, Mongrand, Sebastien, Cahoon, Edgar, Ng, Carl K-Y, Mortimer, Jenny, Beaudoin, Frederic, Mongrand, Sébastien, Laboratoire de Bioénergie Membranaire (LBM), Laboratoire de Bioénergie Membranaire, Agroécologie [Dijon], Université de Bourgogne (UB)-Institut National de la Recherche Agronomique (INRA)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, University of Nebraska [Lincoln], University of Nebraska System, University of Dublin, University of California [Berkeley], University of California, and Rothamsted Research
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[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] - Abstract
International audience; The Plasma Membrane (PM) is a key structure protecting the cell, regulating nutrient exchanges and acting as a control tower allowing the cell to perceive signals. Plasma comes from the greek πλάσμα meaning "which molds", meaning that the PM takes the shape of the cell by delimitating it. The PM harbors the appropriate signaling cascades allowing adaptive responses ensuring proper cell functions in a continuously fluctuating environment, crucial for cell survival. To address this challenge, the PM needs to be both stable and robust yet incredibly fluid and adaptable. This amazing combination of long-term stability and short-term dynamics in order to adapt to signals relies on its fascinating molecular organization. PMs are extremely complex systems, harboring many different molecular species of lipids in which heterogeneity is more likely to occur than homogeneity. In plants as in animals, the recent development of proteomics, lipidomics and methods to visualize lipids and proteins in vivo has greatly increased our knowledge of the PM. Corresponding Author Sébastien Mongrand
- Published
- 2018
22. Differentiation of Trafficking Pathways at Golgi Entry Core Compartments and Post-Golgi Subdomains.
- Author
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Ito, Yoko and Boutté, Yohann
- Abstract
Eukaryotic cells have developed specialized membrane structures called organelles, which compartmentalize cellular functions and chemical reactions. Recent improvements in microscopy and membrane compartment isolation techniques are now sophisticating our view. Emerging evidences support that there are distinct sub-populations or subdomains, which are spatially and/or temporally segregated within one type of organelle, contributing to specify differential sorting of various cargos to distinct destinations of the cell. In plant cells, the Golgi apparatus represents a main trafficking hub in which entry occurs through a Golgi Entry Core Compartment (GECCO), that remains to be further characterized, and sorting of cargos is mediated through multiple transport pathways with different sets of regulator proteins at the post-Golgi compartment trans-Golgi network (TGN). Both GECCO and TGN are differentiated sub-populations as compared to the rest of Golgi, and moreover, further subdomain formation within TGN is suggested to play a key role for cargo sorting. In this review, we will summarize recent findings obtained on organelle subdomains, and their relationship with cargo entry at and exit from the Golgi apparatus. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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23. Sphingolipids in plants: a guidebook on their function in membrane architecture, cellular processes, and environmental or developmental responses.
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Mamode Cassim, Adiilah, Grison, Magali, Ito, Yoko, Simon‐Plas, Francoise, Mongrand, Sébastien, and Boutté, Yohann
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SPHINGOLIPIDS ,CELL membranes ,SMALL molecules ,CELL polarity ,GUIDEBOOKS ,MEMBRANE lipids - Abstract
Sphingolipids are fundamental lipids involved in various cellular, developmental and stress‐response processes. As such, they orchestrate not only vital molecular mechanisms of living cells but also act in diseases, thus qualifying as potential pharmaceutical targets. Sphingolipids are universal to eukaryotes and are also present in some prokaryotes. Some sphingolipid structures are conserved between animals, plants and fungi, whereas others are found only in plants and fungi. In plants, the structural diversity of sphingolipids, as well as their downstream effectors and molecular and cellular mechanisms of action, are of tremendous interest to both basic and applied researchers, as about half of all small molecules in clinical use originate from plants. Here, we review recent advances towards a better understanding of the biosynthesis of sphingolipids, the diversity in their structures as well as their functional roles in membrane architecture, cellular processes such as membrane trafficking and cell polarity, and cell responses to environmental or developmental signals. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
24. Metabolic Cellular Communications: Feedback Mechanisms between Membrane Lipid Homeostasis and Plant Development.
- Author
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Boutté, Yohann and Jaillais, Yvon
- Subjects
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PLANT development , *PLANT lipids , *LIPID metabolism , *INTRACELLULAR membranes , *PLANT growth , *PLANT-soil relationships , *MEMBRANE lipids - Abstract
Membrane lipids are often viewed as passive building blocks of the endomembrane system. However, mounting evidence suggests that sphingolipids, sterols, and phospholipids are specifically targeted by developmental pathways, notably hormones, in a cell- or tissue-specific manner to regulate plant growth and development. Targeted modifications of lipid homeostasis may act as a way to execute a defined developmental program, for example, by regulating other signaling pathways or participating in cell differentiation. Furthermore, these regulations often feed back on the very signaling pathway that initiates the lipid metabolic changes. Here, we review several recent examples highlighting the intricate feedbacks between membrane lipid homeostasis and plant development. In particular, these examples illustrate how all aspects of membrane lipid metabolic pathways are targeted by these feedback regulations. We propose that the time has come to consider membrane lipids and lipid metabolism as an integral part of the developmental program needed to build a plant. Boutté and Jaillais present a Review discussing the importance of membrane lipids in regulating plant growth and development. They consider the intricate feedbacks between membrane lipid homeostasis and plant development and propose that membrane lipid metabolism is an integral component of the developmental program needed to build a plant. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
25. The SMO1 Family of Sterol 4α-Methyl Oxidases Is Essential for Auxin- and Cytokinin-Regulated Embryogenesis.
- Author
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Jieqiong Song, Shuangli Sun, Huiwen Ren, Grison, Magali, Boutté, Yohann, Weili Bai, and Shuzhen Men
- Published
- 2019
- Full Text
- View/download PDF
26. Rho-of-plant-activated root hair formation requires Arabidopsis YIP4a/b gene function.
- Author
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Gendre, Delphine, Baral, Anirban, Xie Dang, Esnay, Nicolas, Boutté, Yohann, Stanislas, Thomas, Vain, Thomas, Claverol, Stéphane, Gustavsson, Anna, Deshu Lin, Grebe, Markus, and Bhalerao, Rishikesh P.
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GUANOSINE triphosphate ,ROOT hairs (Botany) ,ARABIDOPSIS thaliana - Abstract
Root hairs are protrusions from root epidermal cells with critical roles in plant soil interactions. While much is known about patterning, polarity and tip growth of root hairs, contributions of membrane trafficking to hair initiation remain poorly understood. Here we demonstrate that the trans-Golgi network-localized YPTINTERACTING PROTEINS 4a/b contribute to activation and plasma membrane accumulation of Rho-of-plant (ROP) small GTPases during hair initiation, identifying YIP4a/b as central trafficking components in ROP-dependent root hair formation. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
27. AP2/ERF transcription factors orchestrate very long chain fatty acid biosynthesis during Arabidopsis lateral root development.
- Author
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Guyomarc'h, Soazig, Boutté, Yohann, and Laplaze, Laurent
- Published
- 2021
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- View/download PDF
28. Lipids at the crossroad: Shaping biological membranes heterogeneity defines trafficking pathways.
- Author
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Boutté, Yohann
- Subjects
- *
LIPID analysis , *BIOLOGICAL membranes , *INTRACELLULAR membranes , *ORGANIC chemistry , *EUKARYOTIC cells , *BIOPHYSICS - Abstract
Lipids are essential components of biological membranes that present a wide diversity in eukaryotic cells. Recent impressive advances in lipid biochemistry and biophysics have enabled a refocus of our view of lipids as functional units for cellular activity. However, the gap between molecular and cellular processes remains to be bridged. Here, 2 papers meet the burden of proof that choline transporters participate in local lipid composition modifications at the trans-Golgi network, an intracellular compartment that serves as the main sorting station in the cell. Localization of choline transporters to this precise compartment could be a way for plant cells to quickly modify the membrane lipid composition and asymmetry during both the allocation of cargos and the recruitment of trafficking machineries into distinct subcellular pathways. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
29. Sterol Methyl Oxidases Affect Embryo Development via Auxin-Associated Mechanisms.
- Author
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Xia Zhang, Shuangli Sun, Xiang Nie, Boutté, Yohann, Grison, Magali, Panpan Li, Susu Kuang, and Shuzhen Men
- Subjects
STEROLS ,PLANT embryology ,AUXIN ,BIOSYNTHESIS ,CELL growth ,PHENOTYPES ,ENDOCYTOSIS ,GAS chromatography/Mass spectrometry (GC-MS) ,PLANTS - Abstract
Sterols are essential molecules for multiple biological processes, including embryogenesis, cell elongation, and endocytosis. The plant sterol biosynthetic pathway is unique in the involvement of two distinct sterol 4a-methyl oxidase (SMO) families, SMO1 and SMO2, which contain three and two isoforms, respectively, and are involved in sequential removal of the two methyl groups at C-4. In this study, we characterized the biological functions of members of the SMO2 gene family. SMO2-1 was strongly expressed in most tissues during Arabidopsis (Arabidopsis thaliana) development, whereas SMO2-2 showed a more specific expression pattern. Although single smo2 mutants displayed no obvious phenotype, the smo2-1 smo2-2 double mutant was embryonic lethal, and the smo2-1 smo2-2/+ mutant was dwarf, whereas the smo2-1/+ smo2-2 mutant exhibited a moderate phenotype. The phenotypes of the smo2 mutants resembled those of auxin-defective mutants. Indeed, the expression of DR5
rev :GFP, an auxin-responsive reporter, was reduced and abnormal in smo2-1 smo2-2 embryos. Furthermore, the expression and subcellular localization of the PIN1 auxin efflux facilitator also were altered. Consistent with these observations, either the exogenous application of auxin or endogenous auxin overproduction (YUCCA9 overexpression) partially rescued the smo2-1 smo2-2 embryonic lethality. Surprisingly, the dwarf phenotype of smo2-1 smo2-2/+ was completely rescued by YUCCA9 overexpression. Gas chromatography-mass spectrometry analysis revealed a substantial accumulation of 4a-methylsterols, substrates of SMO2, in smo2 heterozygous double mutants. Together, our data suggest that SMO2s are important for correct sterol composition and function partially through effects on auxin accumulation, auxin response, and PIN1 expression to regulate Arabidopsis embryogenesis and postembryonic development. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
30. The hydrophobic segment of Arabidopsis thaliana cluster I diacylglycerol kinases is sufficient to target the proteins to cell membranes
- Author
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Vaultier, Marie-Noëlle, Cantrel, Catherine, Guerbette, Françoise, Boutté, Yohann, Vergnolle, Chantal, Çiçek, Dominique, Bolte, Susanne, Zachowski, Alain, and Ruelland, Eric
- Published
- 2008
- Full Text
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31. Immunocytochemical Fluorescent In Situ Visualization of Proteins In Arabidopsis.
- Author
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Boutté, Yohann and Grebe, Markus
- Published
- 2014
- Full Text
- View/download PDF
32. Sterol Dynamics During Endocytic Trafficking in Arabidopsis.
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Stanislas, Thomas, Grebe, Markus, and Boutté, Yohann
- Published
- 2014
- Full Text
- View/download PDF
33. Modulation of endomembranes morphodynamics in the secretory/retrograde pathways depends on lipid diversity.
- Author
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Boutté, Yohann and Moreau, Patrick
- Subjects
- *
INTRACELLULAR membranes , *MEMBRANE lipids , *CELL physiology , *LIPID metabolism , *SECRETORY granules - Abstract
Membrane lipids are crucial bricks for cell and organelle compartmentalization and their physical properties and interactions with other membrane partners (lipids or proteins) reveal lipids as key actors of the regulation of membrane morphodynamics in many cellular functions and especially in the secretory/retrograde pathways. Studies on membrane models have indicated diverse mechanisms by which membranes bend. Moreover, in vivo studies also indicate that membrane curvature can play crucial roles in the regulation of endomembrane morphodynamics, organelle morphology and transport vesicle formation. A role for enzymes of lipid metabolism and lipid–protein interactions will be discussed as crucial mechanisms in the regulation of membrane morphodynamics in the secretory/retrograde pathways. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
34. High lipid order of Arabidopsis cell-plate membranes mediated by sterol and DYNAMIN-RELATED PROTEIN1A function.
- Author
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Frescatada‐Rosa, Márcia, Stanislas, Thomas, Backues, Steven K., Reichardt, Ilka, Men, Shuzhen, Boutté, Yohann, Jürgens, Gerd, Moritz, Thomas, Bednarek, Sebastian Y., and Grebe, Markus
- Subjects
ARABIDOPSIS ,STEROLS ,PLANT genetics ,DYNAMIN (Genetics) ,PLANT cells & tissues ,CYTOKINESIS ,PLANTS - Abstract
Membranes of eukaryotic cells contain high lipid-order sterol-rich domains that are thought to mediate temporal and spatial organization of cellular processes. Sterols are crucial for execution of cytokinesis, the last stage of cell division, in diverse eukaryotes. The cell plate of higher-plant cells is the membrane structure that separates daughter cells during somatic cytokinesis. Cell-plate formation in Arabidopsis relies on sterol- and DYNAMIN-RELATED PROTEIN1A (DRP1A)-dependent endocytosis. However, functional relationships between lipid membrane order or lipid packing and endocytic machinery components during eukaryotic cytokinesis have not been elucidated. Using ratiometric live imaging of lipid order-sensitive fluorescent probes, we show that the cell plate of Arabidopsis thaliana represents a dynamic, high lipid-order membrane domain. The cell-plate lipid order was found to be sensitive to pharmacological and genetic alterations of sterol composition. Sterols co-localize with DRP1A at the cell plate, and DRP1A accumulates in detergent-resistant membrane fractions. Modifications of sterol concentration or composition reduce cell-plate membrane order and affect DRP1A localization. Strikingly, DRP1A function itself is essential for high lipid order at the cell plate. Our findings provide evidence that the cell plate represents a high lipid-order domain, and pave the way to explore potential feedback between lipid order and function of dynamin-related proteins during cytokinesis. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
35. Plasma membrane partitioning: from macro-domains to new views on plasmodesmata.
- Author
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Boutté, Yohann and Moreau, Patrick
- Subjects
CELL membranes ,PLASMODESMATA ,CELL communication ,PLANT cells & tissues ,CELL junctions ,BOTANY - Abstract
Compartmentalization of cellular functions relies on partitioning of domains of diverse sizes within the plasma membrane (PM). Macro-domains measure several micrometers and contain specific proteins concentrated to specific sides (apical, basal, and lateral) of the PM conferring a polarity to the cell. Cell polarity is one of the driving forces in tissue and growth patterning. To maintain macro-domains within the PM, eukaryotic cells exert diverse mechanisms to counteract the free lateral diffusion of proteins. Protein activation/inactivation, endocytosis, PM recycling of transmembrane proteins and the role of diffusion barriers in macro-domains partitioning at PM will be discussed. Moreover, as plasmodesmata (PDs) are domains inserted within the PM which also mediate tissue and growth patterning, it is essential to understand how segregation of specific set of proteins is maintained at PDs while PDs domains are smaller in size compared to macro-domains. Here, we will present mechanisms allowing restriction of proteins at PM macro-domains, but for which molecular components have been found in PDs proteome. We will explore the hypothesis that partitioning of macro-domains and PDs may be ruled by similar mechanisms. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
36. Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in Arabidopsis.
- Author
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Viotti, Corrado, Krüger, Falco, Krebs, Melanie, Neubert, Christoph, Fink, Fabian, Lupanga, Upendo, Scheuring, David, Boutté, Yohann, Frescatada-Rosa, Márcia, Wolfenstetter, Susanne, Sauer, Norbert, Hillmer, Stefan, Grebe, Markus, and Schumacher, Karin
- Subjects
ENDOPLASMIC reticulum ,ARABIDOPSIS ,CELL physiology ,ARABIDOPSIS thaliana ,CELL growth - Abstract
Vacuoles are multifunctional organelles essential for the sessile lifestyle of plants. Despite their central functions in cell growth, storage, and detoxification, knowledge about mechanisms underlying their biogenesis and associated protein trafficking pathways remains limited. Here, we show that in meristematic cells of the Arabidopsis thaliana root, biogenesis of vacuoles as well as the trafficking of sterols and of two major tonoplast proteins, the vacuolar H
+ -pyrophosphatase and the vacuolar H+ -adenosinetriphosphatase, occurs independently of endoplasmic reticulum (ER)–Golgi and post-Golgi trafficking. Instead, both pumps are found in provacuoles that structurally resemble autophagosomes but are not formed by the core autophagy machinery. Taken together, our results suggest that vacuole biogenesis and trafficking of tonoplast proteins and lipids can occur directly from the ER independent of Golgi function. [ABSTRACT FROM AUTHOR]- Published
- 2013
- Full Text
- View/download PDF
37. Cellular processes relying on sterol function in plants
- Author
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Boutté, Yohann and Grebe, Markus
- Subjects
- *
PLANT plasma membranes , *STEROLS , *BIOSYNTHESIS , *PHARMACOLOGY , *ARABIDOPSIS , *PLANT proteins , *PROTEIN binding - Abstract
Sterols are lipophilic membrane components essential for diverse cellular functions. The plant sterol biosynthesis pathway has largely been defined by biochemical approaches. Sterol function has been investigated by the pharmacological and genetic manipulation of sterol biosynthesis. However, mechanisms by which sterols influence cellular processes and targets of sterol function remain largely unknown. During the last two years, new Arabidopsis sterol biosynthesis mutants have been characterized. Their analysis has revealed the contributions of known and alternative routes of sterol biosynthesis to various cellular processes. Subcellular localization and trafficking of a sterol-binding protein have been investigated and first steps towards in vivo characterization of sterol-enriched membrane domains have been taken. Finally, mechanistic insight into the role of plant sterols during endocytosis and the establishment of cell polarity has been obtained. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
38. Sterol-dependent endocytosis mediates post-cytokinetic acquisition of PIN2 auxin efflux carrier polarity.
- Author
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Shuzhen Men, Boutté, Yohann, Ikeda, Yoshihisa, Xugang Li, Palme, Klaus, Stierhof, York-Dieter, Hartmann, Marie-Andrée, Moritz, Thomas, and Grebe, Markus
- Subjects
- *
STEROLS , *PLANT hormones , *AUXIN , *ENDOCYTOSIS , *GEOTROPISM , *PLANT growth - Abstract
The polarization of yeast and animal cells relies on membrane sterols for polar targeting of proteins to the plasma membrane, their polar endocytic recycling and restricted lateral diffusion. However, little is known about sterol function in plant-cell polarity. Directional root growth along the gravity vector requires polar transport of the plant hormone auxin. In Arabidopsis, asymmetric plasma membrane localization of the PIN–FORMED2 (PIN2) auxin transporter directs root gravitropism. Although the composition of membrane sterols influences gravitropism and localization of two other PIN proteins, it remains unknown how sterols contribute mechanistically to PIN polarity. Here, we show that correct membrane sterol composition is essential for the acquisition of PIN2 polarity. Polar PIN2 localization is defective in the sterol-biosynthesis mutant cyclopropylsterol isomerase1-1 (cpi1-1) which displays altered sterol composition, PIN2 endocytosis, and root gravitropism. At the end of cytokinesis, PIN2 localizes initially to both newly formed membranes but subsequently disappears from one. By contrast, PIN2 frequently remains at both daughter membranes in endocytosis-defective cpi1-1 cells. Hence, sterol composition affects post-cytokinetic acquisition of PIN2 polarity by endocytosis, suggesting a mechanism for sterol action on establishment of asymmetric protein localization. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
39. Mechanisms of auxin-dependent cell and tissue polarity
- Author
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Boutté, Yohann, Ikeda, Yoshihisa, and Grebe, Markus
- Subjects
- *
GUANOSINE triphosphate , *CELL membranes , *BIOMOLECULES , *MEMBRANE proteins , *DEVELOPMENTAL biology , *CELL polarity , *PLANTS - Abstract
The establishment of cellular asymmetries and their coordination within the tissue layer are fundamental to the development of multicellular organisms. In plants, the induction and coordination of cell polarity have classically been attributed to involve the hormone auxin and its flow. However, the underlying mechanisms have only recently been addressed at the molecular level. We review progress on the characterisation of the auxin influx and efflux carrier properties of specific plasma membrane proteins, mechanisms underlying their delivery to and internalisation from the plasma membrane, their endocytic transport and degradation. We discuss mechanisms of auxin gradient, transport and response action during the coordination of polarity, along with the downstream involvement of Rho-of-plant small GTPases during the execution of cell polarity. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
40. Involvement of the cytoskeleton in the secretory pathway and plasma membrane organisation of higher plant cells
- Author
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Boutté, Yohann, Vernhettes, Samantha, and Satiat-Jeunemaitre, Béatrice
- Published
- 2007
- Full Text
- View/download PDF
41. Inhibition of Very Long Chain Fatty Acids Synthesis Mediates PI3P Homeostasis at Endosomal Compartments.
- Author
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Ito, Yoko, Esnay, Nicolas, Fougère, Louise, Platre, Matthieu Pierre, Cordelières, Fabrice, Jaillais, Yvon, and Boutté, Yohann
- Subjects
FATTY acids ,HOMEOSTASIS ,CELL imaging ,ENDOSOMES ,PHOSPHATIDYLINOSITOL 3-kinases - Abstract
A main characteristic of sphingolipids is the presence of a very long chain fatty acid (VLCFA) whose function in cellular processes is not yet fully understood. VLCFAs of sphingolipids are involved in the intracellular traffic to the vacuole and the maturation of early endosomes into late endosomes is one of the major pathways for vacuolar traffic. Additionally, the anionic phospholipid phosphatidylinositol-3-phosphate (PtdIns (3)P or PI3P) is involved in protein sorting and recruitment of small GTPase effectors at late endosomes/multivesicular bodies (MVBs) during vacuolar trafficking. In contrast to animal cells, PI3P mainly localizes to late endosomes in plant cells and to a minor extent to a discrete sub-domain of the plant's early endosome (EE)/trans-Golgi network (TGN) where the endosomal maturation occurs. However, the mechanisms that control the relative levels of PI3P between TGN and MVBs are unknown. Using metazachlor, an inhibitor of VLCFA synthesis, we found that VLCFAs are involved in the TGN/MVB distribution of PI3P. This effect is independent from either synthesis of PI3P by PI3-kinase or degradation of PI(3,5)P
2 into PI3P by the SUPPRESSOR OF ACTIN1 (SAC1) phosphatase. Using high-resolution live cell imaging microscopy, we detected transient associations between TGNs and MVBs but VLCFAs are not involved in those interactions. Nonetheless, our results suggest that PI3P might be transferable from TGN to MVBs and that VLCFAs act in this process. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
42. Enrichment of hydroxylated C24- and C26-acyl-chain sphingolipids mediates PIN2 apical sorting at trans-Golgi network subdomains.
- Author
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Wattelet-Boyer, Valérie, Brocard, Lysiane, Jonsson, Kristoffer, Esnay, Nicolas, Joubès, Jérôme, Domergue, Frédéric, Mongrand, Sébastien, Raikhel, Natasha, Bhalerao, Rishikesh P., Moreau, Patrick, and Boutté, Yohann
- Published
- 2016
- Full Text
- View/download PDF
43. The plasma membrane recycling pathway and cell polarity in plants: studies on PIN proteins.
- Author
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Boutté, Yohann, Crosnier, Marie-Thérèse, Carraro, Nicola, Traas, Jan, and Satiat-Jeunemaitre, Béatrice
- Subjects
- *
PROTEINS , *BIOMOLECULES , *CYTOPLASM , *ARABIDOPSIS , *CELL membranes , *IMMUNOCYTOCHEMISTRY , *IMMUNOFLUORESCENCE , *IMAGING systems - Abstract
The PIN-FORMED (PIN) proteins are plasma-membrane-associated facilitators of auxin transport. They are often targeted to one side of the cell only through subcellular mechanisms that remain largely unknown. Here, we have studied the potential roles of the cytoskeleton and endomembrane system in the localisation of PIN proteins. Immunocytochemistry and image analysis on root cells from Arabidopsis thaliana and maize showed that 10-30% of the intracellular PIN proteins mapped to the Golgi network, but never to prevacuolar compartments. The remaining 70-90% were associated with yet to be identified structures. The maintenance of PIN proteins at the plasma membrane depends on a BFA-sensitive machinery, but not on microtubules and actin filaments. The polar localisation of PIN proteins at the plasmamembrane was not reflected by any asymmetric distribution of cytoplasmic organelles. In addition, PIN proteins were inserted in a symmetrical manner at both sides of the cell plate during cytokinesis. Together, the data indicate that the localisation of PIN proteins is a postmitotic event, which depends on local characteristics of the plasma membrane and its direct environment. In this context, we present evidence that microtubule arrays might define essential positional information for PIN localisation. This information seems to require the presence of an intact cell wall. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
44. Plant lipids: Key players of plasma membrane organization and function.
- Author
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Mamode Cassim, Adiilah, Gouguet, Paul, Gronnier, Julien, Laurent, Nelson, Germain, Véronique, Grison, Magali, Boutté, Yohann, Gerbeau-Pissot, Patricia, Simon-Plas, Françoise, and Mongrand, Sébastien
- Subjects
- *
PLASMODESMATA - Abstract
Abstract The plasma membrane (PM) is the biological membrane that separates the interior of all cells from the outside. The PM is constituted of a huge diversity of proteins and lipids. In this review, we will update the diversity of molecular species of lipids found in plant PM. We will further discuss how lipids govern global properties of the plant PM, explaining that plant lipids are unevenly distributed and are able to organize PM in domains. From that observation, it emerges a complex picture showing a spatial and multiscale segregation of PM components. Finally, we will discuss how lipids are key players in the function of PM in plants, with a particular focus on plant-microbe interaction, transport and hormone signaling, abiotic stress responses, plasmodesmata function. The last chapter is dedicated to the methods that the plant membrane biology community needs to develop to get a comprehensive understanding of membrane organization in plants. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
45. La protéomique de sous-domaines du trans-Golgi Network révèle un lien entre les sphingolipides et les phosphoinositides chez la plante
- Author
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Esnay, Nicolas, Laboratoire de biogenèse membranaire (LBM), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Yohann Boutté, Boutté, Yohann, Guyomarc'h, Soazig, McCusker, Derek, Jaillais, Yvon, D’Angelo, Giovanni, and STAR, ABES
- Subjects
Proteomics ,Protéomique ,Vésicules ,Interaction ,Sphingolipides ,Phosphoinositides ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BV] Life Sciences [q-bio]/Vegetal Biology ,lipids (amino acids, peptides, and proteins) ,Trans-Golgi Network ,Vesicles ,Crosstalk - Abstract
Cell polarity is a defining feature of all organisms. Until very recently, it was thought that delivery of proteins to polar domains of root epidermal cells plasma membrane was non-polar, but this view has been re-examined, the delivery is polar but the dynamics, the paths taken, and the mechanisms are unknown. My host team previously characterised an enrichment of Very-Long-Chain-Fatty-Acids (VLCFAs)-containing sphingolipids at the site of secretory vesicles (SVs) sub-domain of the trans-Golgi Network (TGN). Moreover, the length of sphingolipids acyl-chain was found to play a critical role in secretory sorting of the auxin carrier PIN2 from SVsassociated TGN to apical polar domain of the plasma membrane (PM). During my PhD, I addressed the following question: how sphingolipids act at SVs/TGN? Using proteomics of SVs, genetics and pharmacological tools in combination with visualisation of lipid probes we could identify that sphingolipids act on phosphoinositides (PIPs) homeostasis establishing a new functional link between these two lipids in plant cells. Using a set of multi-affinity fluorescent PIPs probes I could show that sphingolipids target phosphatidylinositol-3-phosphate (PI3P) and phosphatidylinositol-4-phosphate (PI4P). Moreover, my proteomic analyses show that several PIPs-related proteins are downregulated in immuno-purified TGN-associated SVs when the sphingolipid composition is altered pharmacologically. My results force the reassessment of our view of lipid membranes dynamics and highlight the idea that dynamic remodelling of the composition of one lipid class, the phosphoinositides, can be modulated by another lipid class, the sphingolipids., La polarité cellulaire est une caractéristique commune à tous les organismes. Jusqu’à récemment, il était assumé que la sécrétion de protéines vers des domaines polaires de la cellule végétale se faisait de façon non polarisée, mais ce point de vue a été re-étudié, la sécrétion est polarisée mais la dynamique, les voies de traficempruntées et les mécanismes sont toujours inconnus. Précédemment, mon laboratoire d’accueil a caractérisé un enrichissement en sphingolipides contenant des acides gras à très longues chaines (VLCFAs) au niveau d’un sous-domaine du trans-Golgi Network (TGN) appelé Vésicules de Sécrétions (SVs). Plus précisément, il a été montré que la longueur des acides gras des sphingolipides jouait un rôle critique dans la sécrétion du transporteur d’auxine PIN2 des SVs vers des domaines polaires de la membrane plasmique. Pendant ma thèse, je me suis intéressé à la question suivante : comment les sphingolipides agissent-t-ils au TGN? En identifiant le protéome des SVs, ainsi qu'en utilisant des outils génétiques et pharmacologiques en combinaison avec la visualisation de marqueurs lipidiques, j'ai pu identifier que les sphingolipides agissent sur l’homéostasie des phosphoinositides en mettant en avant un lien fonctionnel entre ces deux classes de lipides au sein de la cellule végétale. En utilisant un set de marqueurs des phosphoinositides (PIPs), j’ai pu montrer que les sphingolipides ciblent principalement le phosphatidyl-inositol-3-phosphate, PI(3)P et le phosphatidylinositol- 4-phosphate, PI(4)P. De plus, mon analyse protéomique a montré que la localisation d'un ensemble de protéines liées aux PIPs était diminuée dans les SVs/TGN immunopurifiées quand la composition des sphingolipides est altérée. Mes résultats nous forcent à revoir notre vision de la dynamique des lipides au niveau des membranes, et suggère l’idée que la dynamique de remodelage de la composition d’une classe de lipide, les phosphoinositides, peut être modulée par une autre classe de lipide, les sphingolipides.
- Published
- 2018
46. Enrichment of hydroxylated C24-and C26-acyl-chain sphingolipids mediates PIN2 apical sorting at trans-Golgi network subdomains
- Author
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Lysiane Brocard, Patrick Moreau, Nicolas Esnay, Valérie Wattelet-Boyer, Frédéric Domergue, Sébastien Mongrand, Natasha V. Raikhel, Jérôme Joubès, Kristoffer Jonsson, Rishikesh P. Bhalerao, Yohann Boutté, UMR 5200 Membrane Biogenesis Laboratory, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux (UB), Institut National de la Recherche Agronomique (INRA), Bordeaux Imaging Center (BIC), Université de Bordeaux (UB)-Institut François Magendie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Umea Plant Science Center (UPSC), Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU)-Swedish University of Agricultural Sciences (SLU), Biologie végétale intégrative (BVI), Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut National de la Recherche Agronomique (INRA)-Université Bordeaux Segalen - Bordeaux 2, Center for Plant Cell Biology - Department of Botany and Plant Sciences, University of California [Riverside] (UCR), University of California-University of California, College of Science [Swansea], Swansea University, Biologie du fruit et pathologie (BFP), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1, initiative d'excellence de l'Universite de Bordeaux (IdEx Bordeaux), French National Research Center (CNRS), French National Research Agency (ANR) [NT09_517917, 2010 BLAN 1319 03], Knut and Alice Wallenberg foundation, French National Research Agency [ANR-10-INBS-04, ANR-11-INBS-0010], Umeå Plant Science Centre - Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), College of Science, Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Boutté, Yohann, ProdInra, Archive Ouverte, Laboratoire de biogenèse membranaire (LBM), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1 (UB)-Centre National de la Recherche Scientifique (CNRS), University of California [Riverside] (UC Riverside), University of California (UC)-University of California (UC), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1 (UB), and Université Sciences et Technologies - Bordeaux 1-Institut National de la Recherche Agronomique (INRA)-Université Bordeaux Segalen - Bordeaux 2
- Subjects
0301 basic medicine ,Science ,[SDV]Life Sciences [q-bio] ,General Physics and Astronomy ,macromolecular substances ,Biology ,environment and public health ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,symbols.namesake ,Auxin ,Arabidopsis ,Compartment (development) ,chemistry.chemical_classification ,Multidisciplinary ,fungi ,food and beverages ,General Chemistry ,Apical membrane ,Golgi apparatus ,biology.organism_classification ,Secretory Vesicle ,Sphingolipid ,Cell biology ,[SDV] Life Sciences [q-bio] ,carbohydrates (lipids) ,030104 developmental biology ,chemistry ,Acyl chain ,symbols ,lipids (amino acids, peptides, and proteins) - Abstract
The post-Golgi compartment trans-Golgi Network (TGN) is a central hub divided into multiple subdomains hosting distinct trafficking pathways, including polar delivery to apical membrane. Lipids such as sphingolipids and sterols have been implicated in polar trafficking from the TGN but the underlying mechanisms linking lipid composition to functional polar sorting at TGN subdomains remain unknown. Here we demonstrate that sphingolipids with α-hydroxylated acyl-chains of at least 24 carbon atoms are enriched in secretory vesicle subdomains of the TGN and are critical for de novo polar secretory sorting of the auxin carrier PIN2 to apical membrane of Arabidopsis root epithelial cells. We show that sphingolipid acyl-chain length influences the morphology and interconnections of TGN-associated secretory vesicles. Our results uncover that the sphingolipids acyl-chain length links lipid composition of TGN subdomains with polar secretory trafficking of PIN2 to apical membrane of polarized epithelial cells., Sphingolipids in the trans-Golgi network have been implicated in polar trafficking. Here Wattelet-Boyer et al. show that hydroxylated C24- and C26-acyl-chain sphingolipids are enriched in trans-Golgi network subdomains that are critical for polar sorting of the PIN2 auxin carrier in plant cells.
- Published
- 2016
47. TYPHON proteins are RAB-dependent mediators of the trans-Golgi network secretory pathway.
- Author
-
Baral A, Gendre D, Aryal B, Fougère L, Di Fino LM, Ohori C, Sztojka B, Uemura T, Ueda T, Marhavý P, Boutté Y, and Bhalerao RP
- Abstract
The trans-Golgi network (TGN), a key compartment in endomembrane trafficking, participates in both secretion to and endocytosis from the plasma membrane. Consequently, the TGN plays a key role in plant growth and development. Understanding how proteins are sorted for secretion or endocytic recycling at the TGN is critical for elucidating mechanisms of plant development. We previously showed that the protein ECHIDNA is essential for phytohormonal control of hypocotyl bending because it mediates secretion of cell wall components and the auxin influx carrier AUXIN RESISTANT 1 (AUX1) from the TGN. Despite the critical role of ECHIDNA in TGN-mediated trafficking, its mode of action remains unknown in Arabidopsis (Arabidopsis thaliana). We therefore performed a suppressor screen on the ech mutant. Here, we report the identification of TGN-localized TYPHON 1 (TPN1) and TPN2 proteins. A single amino acid change in either TPN protein causes dominant suppression of the ech mutant's defects in growth and AUX1 secretion, while also restoring wild-type-like ethylene-responsive hypocotyl bending. Importantly, genetic and cell biological evidence shows that TPN1 acts through RAS-ASSOCIATED BINDING H1b (RABH1b), a TGN localized RAB-GTPase. These results provide insights into ECHIDNA-mediated secretory trafficking of cell wall and auxin carriers at the TGN, as well as its role in controlling plant growth., (© The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists.)
- Published
- 2024
- Full Text
- View/download PDF
48. A global LC-MS 2 -based methodology to identify and quantify anionic phospholipids in plant samples.
- Author
-
Genva M, Fougère L, Bahammou D, Mongrand S, Boutté Y, and Fouillen L
- Subjects
- Chromatography, Liquid methods, Liquid Chromatography-Mass Spectrometry, Tandem Mass Spectrometry methods, Chromatography, High Pressure Liquid methods, Phospholipids metabolism, Arabidopsis metabolism
- Abstract
Anionic phospholipids (PS, PA, PI, PIPs) are low-abundant phospholipids with impactful functions in cell signaling, membrane trafficking and cell differentiation processes. They can be quickly metabolized and can transiently accumulate at defined spots within the cell or an organ to respond to physiological or environmental stimuli. As even a small change in their composition profile will produce a significant effect on biological processes, it is crucial to develop a sensitive and optimized analytical method to accurately detect and quantify them. While thin-layer chromatography (TLC) separation coupled with gas chromatography (GC) detection methods already exist, they do not allow for precise, sensitive, and accurate quantification of all anionic phospholipid species. Here we developed a method based on high-performance liquid chromatography (HPLC) combined with two-dimensional mass spectrometry (MS
2 ) by MRM mode to detect and quantify all molecular species and classes of anionic phospholipids in one shot. This method is based on a derivatization step by methylation that greatly enhances the ionization, the separation of each peak, the peak resolution as well as the limit of detection and quantification for each individual molecular species, and more particularly for PA and PS. Our method universally works in various plant samples. Remarkably, we identified that PS is enriched with very long chain fatty acids in the roots but not in aerial organs of Arabidopsis thaliana. Our work thus paves the way for new studies on how the composition of anionic lipids is finely tuned during plant development and environmental responses., (© 2023 The Authors. The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd.)- Published
- 2024
- Full Text
- View/download PDF
49. Immunopurification of Intact Endosomal Compartments for Lipid Analyses in Arabidopsis.
- Author
-
Ito Y, Grison M, Esnay N, Fouillen L, and Boutté Y
- Subjects
- Arabidopsis chemistry, Arabidopsis metabolism, Fatty Acids analysis, Mass Spectrometry, Protein Transport, Sterols analysis, trans-Golgi Network chemistry, Arabidopsis cytology, Endosomes chemistry, Membrane Lipids analysis
- Abstract
Endosomes play a major role in various cellular processes including cell-cell signaling, development and cellular responses to environment. Endosomes are dynamically organized into a complex set of endomembrane compartments themselves subcompartmentalized in distinct pools or subpopulations. It is increasingly evident that endosome dynamics and maturation is driven by local modification of lipid composition. The diversity of membrane lipids is impressive and their homeostasis often involves crosstalk between distinct lipid classes. Hence, biochemical characterization of endosomal membrane lipidome would clarify the maturation steps of endocytic routes. Immunopurification of intact endomembrane compartments has been employed in recent years to isolate early and late endosomal compartments and can even be used to separate subpopulations of early endosomes. In this section, we will describe the immunoprecipitation protocol to isolate endosomes with the aim to analyze the lipid content. We will detail a procedure to identify the total fatty acid and sterol content of isolated endosomes as a first line of lipid identification. Advantages and limitations of the method will be discussed as well as potential pitfalls and critical steps.
- Published
- 2020
- Full Text
- View/download PDF
50. The SMO1 Family of Sterol 4α-Methyl Oxidases Is Essential for Auxin- and Cytokinin-Regulated Embryogenesis.
- Author
-
Song J, Sun S, Ren H, Grison M, Boutté Y, Bai W, and Men S
- Subjects
- Arabidopsis enzymology, Arabidopsis genetics, Arabidopsis Proteins metabolism, Body Patterning, Endoplasmic Reticulum metabolism, Homeodomain Proteins metabolism, Plant Roots embryology, Arabidopsis embryology, Arabidopsis Proteins genetics, Cytokinins biosynthesis, Embryonic Development, Indoleacetic Acids metabolism, Mixed Function Oxygenases genetics
- Abstract
In the plant sterol biosynthetic pathway, sterol 4α-methyl oxidase1 (SMO1) and SMO2 enzymes are involved in the removal of the first and second methyl groups at the C-4 position, respectively. SMO2s have been found to be essential for embryonic and postembryonic development, but the roles of SMO1s remain unclear. Here, we found that the three Arabidopsis ( Arabidopsis thaliana ) SMO1 genes displayed different expression patterns. Single smo1 mutants and smo1-1 smo1-3 double mutants showed no obvious phenotype, but the smo1-1 smo1-2 double mutant was embryo lethal. The smo1-1 smo1-2 embryos exhibited severe defects, including no cotyledon or shoot apical meristem formation, abnormal division of suspensor cells, and twin embryos. These defects were associated with enhanced and ectopic expression of auxin biosynthesis and response reporters. Consistently, the expression pattern and polar localization of PIN FORMED1, PIN FORMED7, and AUXIN RESISTANT1 auxin transporters were dramatically altered in smo1-1 smo1-2 embryos. Moreover, cytokinin biosynthesis and response were reduced in smo1-1 smo1-2 embryos. Tissue culture experiments further demonstrated that homeostasis between auxin and cytokinin was altered in smo1-1 smo1-2 heterozygous mutants. This disturbed balance of auxin and cytokinin in smo1-1 smo1-2 embryos was accompanied by unrestricted expression of the quiescent center marker WUSCHEL-RELATED HOMEOBOX5 Accordingly, exogenous application of either auxin biosynthesis inhibitor or cytokinin partially rescued the embryo lethality of smo1-1 smo1-2 Sterol analyses revealed that 4,4-dimethylsterols dramatically accumulated in smo1-1 smo1-2 heterozygous mutants. Together, these data demonstrate that SMO1s function through maintaining correct sterol composition to balance auxin and cytokinin activities during embryogenesis., (© 2019 American Society of Plant Biologists. All Rights Reserved.)
- Published
- 2019
- Full Text
- View/download PDF
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