32 results on '"Birse, Charles"'
Search Results
2. Workplace Outreach Program Improves Management of Chronic Kidney Disease
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Iakoubova, Olga A., Tong, Carmen H., Rowland, Charles M., Arellano, Andre R., Bare, Lance A., Fragala, Maren S., and Birse, Charles E.
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- 2022
- Full Text
- View/download PDF
3. Impact of a Digital Diabetes Prevention Program on Risk factors for Chronic Disease in a Workforce Cohort
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Birse, Charles E., Shiffman, Dov, Satish, Anita, Fragala, Maren S., Arellano, Andre R., Sweet, Cynthia M. Castro, and Lagier, Robert J.
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- 2020
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4. Abstract 13006: Digital Diabetes Prevention Program Reduces Medical Costs in the First 2 Years of Implementation in a Workplace Setting
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Birse, Charles E, Iakoubova, Olga A, Arellano, Andre R, Fragala, Maren S, Bare, Lance A, Castro Sweet, Cynthia M, and Lagier, Robert J
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- 2020
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5. Coupling Termination of Transcription to Messenger RNA Maturation in Yeast
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Birse, Charles E., Minvielle-Sebastia, Lionel, Lee, Barbara A., Keller, Walter, and Proudfoot, Nick J.
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- 1998
6. Assessing the impact of a comprehensive mental health program on frontline health service workers.
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Ward, Emily J., Fragala, Maren S., Birse, Charles E., Hawrilenko, Matt, Smolka, Casey, Ambwani, Geetu, Brown, Millard, Krystal, John H., Corlett, Philip R., and Chekroud, Adam
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MENTAL health ,MEDICAL care ,HEALTH programs ,NATIONAL health services ,MENTAL health screening ,INDUSTRIAL hygiene ,FRONTLINE personnel - Abstract
Mental health issues are a growing concern in the workplace, linked to negative outcomes including reduced productivity, increased absenteeism, and increased turnover. Employer-sponsored mental health benefits that are accessible and proactive may help address these concerns. The aim of this retrospective cohort study was to evaluate the impact of a digital mental health benefit (Spring Health) on frontline healthcare service workers' clinical and workplace outcomes. The benefit was sponsored by a national health services company from 2021–2022 and included mental health screening, care navigation, psychotherapy and/or medication management. We hypothesized program use would be associated with improvements in depression and anxiety symptoms, and increased productivity and retention. Participants were employees enrolled in the benefit program, had at least moderate anxiety or depression, at least 1 treatment appointment, and at least 2 outcome assessments. Clinical improvement measures were PHQ-9 scale (range, 0–27) for depression and GAD-7 scale (range, 0–21) for anxiety; workplace measures were employee retention and the Sheehan Disability Scale (SDS) for functional impairment. A total of 686 participants were included. Participants using the mental health benefit had a 5.60 point (95% CI, 4.40–6.79, d = 1.28) reduction in depression and a 5.48 point (95% CI, 3.88–7.08, d = 1.64) reduction in anxiety across 6 months. 69.9% (95% CI, 61.8%–78.1%) of participants reliably improved (≥5 point change) and 84.1% (95% CI, 78.2%–90.1%) achieved reliable improvement or recovery (<10 points). Participants reported 0.70 (95% CI, 0.26–1.14) fewer workdays per week impacted by mental health issues, corresponding to $3,491 (95% CI, $1305–$5677) salary savings at approximately federal median wage ($50,000). Furthermore, employees using the benefit were retained at 1.58 (95% CI, 1.4–1.76) times the rate of those who did not. Overall, this evaluation suggests that accessible, proactive, and comprehensive mental health benefits for frontline health services workers can lead to positive clinical and workplace outcomes. [ABSTRACT FROM AUTHOR]
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- 2023
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- View/download PDF
7. Facilitating Mental Health Treatment Through Proactive Screening and Concierge Services in the Workplace.
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Fragala, Maren S., Tong, Carmen H., Hunter, Jennifer L., Jelovic, Nicole A., Hayward, Joanna I., Carr, Susan, Kim, Paul M., Peters, Matthew E., and Birse, Charles E.
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- 2023
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- View/download PDF
8. Use of an Immunoaffinity-Mass Spectrometry-based Approach for the Quantification of Protein Biomarkers from Serum Samples of Lung Cancer Patients
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Nicol, Gordon R., Han, Mark, Kim, Jun, Birse, Charles E., Brand, Erin, Nguyen, Anh, Mesri, Mehdi, FitzHugh, William, Kaminker, Patrick, Moore, Paul A., Ruben, Steven M., and He, Tao
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- 2008
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9. SOSTDC1 differentially modulates Smad and beta-catenin activation and is down-regulated in breast cancer
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Clausen, Kathryn A., Blish, Kimberly R., Birse, Charles E., Triplette, Matthew A., Kute, Timothy E., Russell, Gregory B., D’Agostino, Jr., Ralph B., Miller, Lance D., Torti, Frank M., and Torti, Suzy V.
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- 2011
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10. Impact of a Digital Diabetes Prevention Program on Estimated 8-Year Risk of Diabetes in a Workforce Population.
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Birse, Charles E., McPhaul, Michael J., Arellano, Andre R., Fragala, Maren S., and Lagier, Robert J.
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BLOOD sugar analysis , *GLYCOSYLATED hemoglobin , *EVALUATION of human services programs , *CONFIDENCE intervals , *TYPE 2 diabetes , *RISK assessment , *EMPLOYEE assistance programs , *DESCRIPTIVE statistics , *INDUSTRIAL hygiene , *BODY mass index , *PREDIABETIC state , *DISEASE risk factors , *DISEASE complications - Abstract
A digital Diabetes Prevention Program (dDPP) was effective in reducing the risk of diabetes in a workforce population. All modifiable components of a validated diabetes risk score (diastolic BP, systolic BP, BMI, fasting glucose, HDL-cholesterol, triglycerides) improved after the first year of the dDPP compared to the year prior. Objective: We asked whether the estimated 8-year risk of diabetes could be reduced within the first 2 years of a digital Diabetes Prevention Program (dDPP) in a workforce population. Methods: Employees and spouses were eligible if they had prediabetes-range fasting glucose or hemoglobin A1c and body mass index ≥25 kg/m2. Diabetes risk was assessed using the Framingham diabetes risk score in the year before and the 2 years after dDPP initiation. Results: Among participants completing at least nine dDPP lessons (n = 286), diabetes risk decreased 5.3% the year after dDPP initiation, after a 5.4% increase the year before initiation (difference in differences, −10.6%; 95% confidence interval, −13.4% to −7.9%; P < 0.001), with risk maintained at reduced levels after the second year of the program. Conclusion: This dDPP reduced the estimated 8-year risk of diabetes over the first 2 years of the program. [ABSTRACT FROM AUTHOR]
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- 2022
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11. Global transcriptional effects of PEG-IFN-α and ribavirin on peripheral blood cells obtained from patients with chronic hepatitis C
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Balan, Vijayan, Aravind, L., Grill, Diane E., Therneau, Terry M., Sulkowski, Mark S., Nelson, David R., Praestgaard, Jens, Rosati, Marianne, Birse, Charles E., Moore, Paul A., and Mani Subramanian, G.
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- 2006
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12. Nascent transcription from the nmt1 and nmt2 genes of Schizosaccharomyces pombe overlaps neighbouring genes
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Hansen, Karen, Birse, Charles E., and Proudfoot, Nick J.
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- 1998
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13. Transcriptional termination signals for RNA polymerase II in fission yeast
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Birse, Charles E., Lee, Barbara A., Hansen, Karen, and Proudfoot, Nick J.
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- 1997
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14. Osteostat/Tumor Necrosis Factor Superfamily 18 Inhibits Osteoclastogenesis and Is Selectively Expressed by Vascular Endothelial Cells
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Nardelli, Bernardetta, Zaritskaya, Liubov, McAuliffe, William, Ni, Yansong, Lincoln, Clint, Cho, Yun Hee, Birse, Charles E., Halpern, Wendy, Ullrich, Stephen, and Moore, Paul A.
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- 2006
15. Development of a Long-Acting Insulin Analog Using Albumin Fusion Technology
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Duttaroy, Alokesh, Kanakaraj, Palanisamy, Osborn, Blaire L., Schneider, Helmut, Pickeral, Oxana K., Chen, Cecil, Zhang, Guiyi, Kaithamana, Shashi, Singh, Mallika, Schulingkamp, Robert, Crossan, Dan, Bock, Jason, Kaufman, Thomas E., Reavey, Peter, Carey-Barber, Melisa, Krishnan, Surekha R., Garcia, Andy, Murphy, Kelly, Siskind, Jana K., McLean, Malia A., Cheng, Susan, Ruben, Steve, Birse, Charles E., and Blondel, Olivier
- Published
- 2005
16. LCN6, a novel human epididymal lipocalin
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Soundararajan Rama, Yenugu Suresh, Anbalagan M, Sivashanmugam P, Liu Qiang, Hamil Katherine G, Grossman Gail, Rao AJ, Birse Charles E, Ruben Stephen M, Richardson Richard T, Zhang Yong-Lian, O'Rand Michael G, Petrusz Peter, French Frank S, and Hall Susan H
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Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Background The lipocalin (LCN) family of structurally conserved hydrophobic ligand binding proteins is represented in all major taxonomic groups from prokaryotes to primates. The importance of lipocalins in reproduction and the similarity to known epididymal lipocalins prompted us to characterize the novel human epididymal LCN6. Methods and Results LCN6 cDNA was identified by database analysis in a comprehensive human library sequencing program. Macaca mulatta (rhesus monkey) cDNA was obtained from an epididymis cDNA library and is 93% homologous to the human. The gene is located on chromosome 9q34 adjacent LCN8 and LCN5. LCN6 amino acid sequence is most closely related to LCN5, but the LCN6 beta-barrel structure is best modeled on mouse major urinary protein 1, a pheromone binding protein. Northern blot analysis of RNAs isolated from 25 human tissues revealed predominant expression of a 1.0 kb mRNA in the epididymis. No other transcript was detected except for weak expression of a larger hybridizing mRNA in urinary bladder. Northern hybridization analysis of LCN6 mRNA expression in sham-operated, castrated and testosterone replaced rhesus monkeys suggests mRNA levels are little affected 6 days after castration. Immunohistochemical staining revealed that LCN6 protein is abundant in the caput epithelium and lumen. Immunofluorescent staining of human spermatozoa shows LCN6 located on the head and tail of spermatozoa with the highest concentration of LCN6 on the post-acrosomal region of the head, where it appeared aggregated into large patches. Conclusions LCN6 is a novel lipocalin closely related to Lcn5 and Lcn8 and these three genes are likely products of gene duplication events that predate rodent-primate divergence. Predominant expression in the epididymis and location on sperm surface are consistent with a role for LCN6 in male fertility.
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- 2003
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17. Chapter 11 - RNAi Validation of Pancreatic Cancer Antigens Identified by Cell Surface Proteomics
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Lee, Candy N., He, Tao, McCaffrey, Ian, Birse, Charles E., McKinnon, Katherine, Domon, Bruno, Ruben, Steven M., and Moore, Paul A.
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- 2014
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18. Clinical validation of a blood-based classifier for diagnostic evaluation of asymptomatic individuals with pulmonary nodules.
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Birse, Charles E., Tomic, Jennifer L., Pass, Harvey I., Rom, William N., and Lagier, Robert J.
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PULMONARY nodules , *PUBLIC health , *BLOOD testing , *CANCER diagnosis , *CHEST X rays - Abstract
Background: The number of pulmonary nodules detected in the US is expected to increase substantially following recent recommendations for nationwide CT-based lung cancer screening. Given the low specificity of CT screening, non-invasive adjuvant methods are needed to differentiate cancerous lesions from benign nodules to help avoid unnecessary invasive procedures in the asymptomatic population. We have constructed a serum-based multi-biomarker panel and assessed its clinical accuracy in a retrospective analysis of samples collected from participants with suspicious radiographic findings in the Prostate, Lung, Chest and Ovarian (PLCO) cancer screening trial. Methods: Starting with a set of 9 candidate biomarkers, we identified 8 that exhibited limited pre-analytical variability with increasing clotting time, a key pre-analytical variable associated with the collection of serum. These 8 biomarkers were evaluated in a training study consisting of 95 stage I NSCLC patients and 186 smoker controls where a 5-biomarker pulmonary nodule classifier (PNC) was selected. The clinical accuracy of the PNC was determined in a blinded study of asymptomatic individuals comprising 119 confirmed malignant nodule cases and 119 benign nodule controls selected from the PLCO screening trial. Results: A PNC comprising 5 biomarkers: CEA, CYFRA 21-1, OPN, SCC, and TFPI, was selected in the training study. In an independent validation study, the PNC resolved lung cancer cases from benign nodule controls with an AUC of 0.653 (p < 0.0001). CEA and CYFRA 21-1, two of the markers included in the PNC, also accurately distinguished malignant lesions from benign controls. Conclusions: A 5-biomarker blood test has been developed for the diagnostic evaluation of asymptomatic individuals with solitary pulmonary nodules. [ABSTRACT FROM AUTHOR]
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- 2017
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19. Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium.
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Birse, Charles E., Lagier, Robert J., FitzHugh, William, Pass, Harvey I., Rom, William N., Edell, Eric S., Bungum, Aaron O., Maldonado, Fabien, Jett, James R., Mesri, Mehdi, Sult, Erin, Joseloff, Elizabeth, Aiqun Li, Heidbrink, Jenny, Dhariwal, Gulshan, Danis, Chad, Tomic, Jennifer L., Bruce, Robert J., Moore, Paul A., and Tao He
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BIOMARKERS , *LUNG cancer , *COMPUTED tomography , *BLOOD viscosity - Abstract
Background: Support for early detection of lung cancer has emerged from the National Lung Screening Trial (NLST), in which low-dose computed tomography (LDCT) screening reduced lung cancer mortality by 20 % relative to chest x-ray. The US Preventive Services Task Force (USPSTF) recently recommended annual screening for the high-risk population, concluding that the benefits (life years gained) outweighed harms (false positive findings, abortive biopsy/surgery, radiation exposure). In making their recommendation, the USPSTF noted that the moderate net benefit of screening was dependent on the resolution of most false-positive results without invasive procedures. Circulating biomarkers may serve as a valuable adjunctive tool to imaging. Results: We developed a broad-based proteomics discovery program, integrating liquid chromatography/mass spectrometry (LC/MS) analyses of freshly resected lung tumor specimens (n = 13), lung cancer cell lines (n = 17), and conditioned media collected from tumor cell lines (n = 7). To enrich for biomarkers likely to be found at elevated levels in the peripheral circulation of lung cancer patients, proteins were prioritized based on predicted subcellular localization (secreted, cell-membrane associated) and differential expression in disease samples. 179 candidate biomarkers were identified. Several markers selected for further validation showed elevated levels in serum collected from subjects with stage I NSCLC (n = 94), relative to healthy smoker controls (n = 189). An 8-marker model was developed (TFPI, MDK, OPN, MMP2, TIMP1, CEA, CYFRA 21-1, SCC) which accurately distinguished subjects with lung cancer (n = 50) from high risk smokers (n = 50) in an independent validation study (AUC = 0.775). Conclusions: Integrating biomarker discovery from multiple sample types (fresh tissue, cell lines and conditioned medium) has resulted in a diverse repertoire of candidate biomarkers. This unique collection of biomarkers may have clinical utility in lung cancer detection and diagnoses. [ABSTRACT FROM AUTHOR]
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- 2015
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20. Contributors
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Abdollahi, Amir, Aguda, Baltazar D., Ali, Shadan, Alian, Osama M., Amundadottir, Laufey T., Azmi, Asfar S., Bao, Ginny F., Bathe, Oliver F., Birse, Charles E., Brentnall, Teresa A., Chen, Ru, Chiblak, Sara, Clarke, Edmund, Domon, Bruno, Funel, Niccola, Gao, Jiankun, Gong, Haijun, Grützmann, Robert, He, Tao, Hoskins, Jason, Hwang, Sun-Il, Jia, Jinping, Kassis, Amin I., Lee, Jin-Gyun, Lee, Candy N., Liotta, Lance A., Lipson, Kenneth E., McCaffrey, Ian, McKinney, Kimberly Q., McKinnon, Katherine, Miele, Lucio, Mohammad, Ramzi M., Moore, Paul A., Muqbil, Irfana, Pan, Sheng, Petricoin, Emanuel F., III., Philip, Philip A., Pierobon, Mariaelena, Pilarsky, Christian, Pospisil, Pavel, Real, Francisco X., Ruben, Steven M., Santa Pau, Enrique Carrillo-de, Sarkar, Fazlul H., Valencia, Alfonso, Wang, Zhiwei, Wu, Tong Tong, and Wulfkuhle, Julie
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- 2014
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21. LCN6, a novel human epididymal lipocalin.
- Author
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Hamil, Katherine G., Qiang Liu, Sivashanmugam, P., Anbalagan, M., Yenugu, Suresh, Soundararajan, Rama, Grossman, Gail, Rao, A. J., Birse, Charles E., Ruben, Stephen M., Richardson, Richard T., Yong-Lian Zhang, O'Rand, Michael G., Petrusz, Peter, French, Frank S., and Hall, Susan H.
- Subjects
LIGAND binding (Biochemistry) ,AMINO acids ,EMBRYOLOGY ,ENDOCRINOLOGY of human reproduction ,REPRODUCTIVE health ,ENDOCRINOLOGY ,BIOLOGY - Abstract
Background: The lipocalin (LCN) family of structurally conserved hydrophobic ligand binding proteins is represented in all major taxonomic groups from prokaryotes to primates. The importance of lipocalins in reproduction and the similarity to known epididymal lipocalins prompted us to characterize the novel human epididymal LCN6. Methods and Results: LCN6 cDNA was identified by database analysis in a comprehensive human library sequencing program. Macaca mulatta (rhesus monkey) cDNA was obtained from an epididymis cDNA library and is 93% homologous to the human. The gene is located on chromosome 9q34 adjacent LCN8 and LCN5. LCN6 amino acid sequence is most closely related to LCN5, but the LCN6 beta-barrel structure is best modeled on mouse major urinary protein 1, a pheromone binding protein. Northern blot analysis of RNAs isolated from 25 human tissues revealed predominant expression of a 1.0 kb mRNA in the epididymis. No other transcript was detected except for weak expression of a larger hybridizing mRNA in urinary bladder. Northern hybridization analysis of LCN6 mRNA expression in sham-operated, castrated and testosterone replaced rhesus monkeys suggests mRNA levels are little affected 6 days after castration. Immunohistochemical staining revealed that LCN6 protein is abundant in the caput epithelium and lumen. Immunofluorescent staining of human spermatozoa shows LCN6 located on the head and tail of spermatozoa with the highest concentration of LCN6 on the post-acrosomal region of the head, where it appeared aggregated into large patches. Conclusions: LCN6 is a novel lipocalin closely related to Lcn5 and Lcn8 and these three genes are likely products of gene duplication events that predate rodent-primate divergence. Predominant expression in the epididymis and location on sperm surface are consistent with a role for LCN6 in male fertility. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
22. 59-LB: Risk of Type 2 Diabetes Is Reduced in the Second Year of a Digital Diabetes Prevention Program in a Workplace Setting.
- Author
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BIRSE, CHARLES E., FRAGALA, MAREN S., ARELLANO, ANDRE R., BARE, LANCE A., SWEET, CYNTHIA CASTRO, and LAGIER, ROBERT J.
- Abstract
Background: A digital Diabetes Prevention Program (dDPP) has been shown to reduce the 8-year risk of diabetes in the first year of implementation in a workforce setting. We asked whether the dDPP reduced the risk of diabetes in a second year. Methods: Individuals were included in the study if they (i) participated in an employer-sponsored wellness program with year-end biometric screening for 4 consecutive years (2016 to 2019), (ii) had prediabetes-range fasting glucose (100 to 125 mg/dL) or Hb1Ac (5.7% to 6.4%), (iii) a BMI ≥25 kg/m2 at the end of 2017, and (iv) completed ≥9 lessons in a dDPP initiated at the beginning of 2018. In the first year of the dDPP, individuals participated in weekly online lessons. In the second year, no new content was introduced, but individuals had access to lessons delivered in year 1. Results: The baseline characteristics from the 2017 year-end screen are provided (Table). On average, participants (n=401) completed 25.1 lessons (SD: 12.3). In the second year of intervention, levels of BMI, fasting glucose, triglycerides and HDL-C, all components of the 8-year diabetes risk score, improved relative to changes observed in the year before intervention. The 8-year risk of developing diabetes was also reduced (Table). Conclusions: The risk of developing type 2 diabetes was reduced in the second year of a dDPP. Disclosure: C.E. Birse: Employee; Self; Quest Diagnostics. M.S. Fragala: Employee; Self; Quest Diagnostics. A.R. Arellano: None. L.A. Bare: Employee; Self; Quest Diagnostics. C. Castro Sweet: Employee; Self; Omada Health. R.J. Lagier: Employee; Self; Quest Diagnostics. Employee; Spouse/Partner; Thermo Fisher Scientific. [ABSTRACT FROM AUTHOR]
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- 2020
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- View/download PDF
23. 77-LB: Digital Behavioral Counseling in a Workforce Setting Reduces 8-Year Risk of Developing Type 2 Diabetes.
- Author
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BIRSE, CHARLES E., FRAGALA, MAREN S., SATISH, ANITA, MCNAMARA, KELSEY C., CASTRO SWEET, CYNTHIA M., and LAGIER, ROBERT J.
- Abstract
Background: Digital behavioral counseling has previously been shown to reduce levels of risk factors for diabetes including fasting glucose and HbA1c. We asked whether the 8-year risk of developing diabetes could be reduced within the first year of a digital counseling program. Methods: Individuals were included in the study if they (i) participated in an employer-sponsored wellness program with year-end biometric screening for 3 consecutive years (2016, 2017, and 2018), (ii) had prediabetes-range fasting glucose (100 to 125 mg/dL) or Hb1Ac (5.7% to 6.4%), (iii) a BMI ≥25 kg/m2 at the end of 2017, and (iv) completed at least 9 lessons in a digital behavioral counseling program initiated at the beginning of 2018. Paired t-Tests were used to assess changes in yearly trajectories of diabetes risk factors before and after intervention (Table). Results: The baseline characteristics of the cohort at the 2017 year-end screen are provided (Table). On average, participants (n=460) were engaged in the counseling program for 9.1 months (SD: 1.2) and completed 25.1 lessons (SD: 12.3). After participation, levels of all biometric variables included in the 8-year risk model* shifted in a favorable direction; the 8-year risk of developing diabetes was reduced (Table). Conclusions: Digital behavioral counseling was effective in reducing risk factors and the 8-year risk of diabetes during the first year of the program. Disclosure: C.E. Birse: Employee; Self; Quest Diagnostics. Stock/Shareholder; Self; Quest Diagnostics. M.S. Fragala: Employee; Self; Quest Diagnostics. A. Satish: None. K.C. McNamara: Employee; Self; Omada Health, Inc. C.M. Castro Sweet: Employee; Self; Omada Health, Inc. R.J. Lagier: Employee; Self; Quest Diagnostics. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
24. Continuous flow leukapheresis induces expression of stress genes in lymphocytes: impact on microarray analyses
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Moir, Susan, Donoghue, Eileen T., Pickeral, Oxana K., Malaspina, Angela, Planta, Marie A., Chun, Tae-Wook, Krishnan, Surekha R., Kottilil, Shyamasundaran, Birse, Charles E., Leitman, Susan F., and Fauci, Anthony S.
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- 2003
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25. An Adipose-Specific Secretome Revealed Through Mass Spectrometry-Based Proteomic Analysis.
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Birse, Charles E., Li, Aiqun, Aggarwal, Sudeepta, Lee, Candy, Han, Mark S., Parmelee, David C., He, Tao, Zhan, Ping N., Benitez, Allison, Stricker, Dawn, Van Orden, Karen, Moore, Paul A., and Ruben, Steve M.
- Subjects
- *
FAT cells , *CYTOKINES , *ADIPOSE tissues , *MASS spectrometry , *PROTEOMICS , *OBESITY - Abstract
Obesity is a major risk factor for a number of disorders ranging from type II diabetes to cardiovascular disease, however, the molecular basis for these associations has not been be fully clarified. A number of adipokines, cytokines expressed exclusively or at an elevated level in adipose tissue, have been identified that play key roles in regulating energy homeostasis by affecting insulin sensitivity, glucose and lipid metabolism and satiety. Dysregulated expression of adipokines may link obesity with its related metabolic disorders. We have developed a proteomics platform that enables the direct identification and functional characterization of adipokines from cells derived from human subcutaneous and visceral adipose depots. Adipocytes isolated from different fat depots (subcutaneous and visceral) from subjects with a spectrum of BMI (19-42) and diabetic progression, were subjected to Mass Spectrometric (MS) analyses. Preadipocytes isolated from adipose tissue were differentiated for 2 weeks, before being incubated in conditioned medium. Secreted and shed proteins released into the medium were labeled with ICAT and digested with trypsin. The cysteine-containing peptides were subjected to Liquid Chromatography (LC) / MS analysis. Peptide maps representing different adipocyte populations were compared and candidates that were differentially expressed were selected. Sequence-composition was resolved through tandem MS and database search. The functionality of a number of these adipokines was evaluated in a series of RNAi-based assays, established in human adipocytes, to determine the possible involvement of these secreted proteins in key metabolic transitions including: lipolysis and glucose uptake. Our systematic proteomic analysis has resulted in the identification of > 20 adipokines. A number of previously characterized secreted proteins, including visfatin and complement C1r were identified. In addition, a number of novel candidates that included: a protease inhibitor, a hydrolase and a molecule involved in cell-adhesion, were also resolved. Interestingly, subsequent comparison of the MS maps within the adipocyte samples revealed significant differences in expression of secreted / shed proteins isolated from: (i) subcutaneous and visceral depots, (ii) lean and obese subjects and (iii) normal and diabetic patients. [ABSTRACT FROM AUTHOR]
- Published
- 2007
26. Genome-wide gene expression of the rare, malignant Reed-Sternberg cell of Hodgkin lymphoma.
- Author
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Cossman, Jeffrey, Vockley, Joseph, Carter, Kenneth, Ruben, Steven, Staudt, Louis, Barash, Steven, Birse, Charles, Rosen, Craig, Dolginow, Doug, and Lennon, Greg
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GENE expression ,CANCER cells ,HODGKIN'S disease ,GENETICS - Abstract
Presents an abstract for the article on the genome-wide gene expression of the malignant Reed-Sternberg cell of Hodgkin lymphoma.
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- 1999
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27. Population health screenings for the prevention of chronic disease progression.
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Fragala MS, Shiffman D, and Birse CE
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- Aged, Colorectal Neoplasms epidemiology, Diabetes Mellitus epidemiology, Disease Progression, Early Diagnosis, Female, Humans, Incidence, Kidney Failure, Chronic epidemiology, Male, Middle Aged, Occupational Health, Prediabetic State epidemiology, Risk Factors, United States epidemiology, Colorectal Neoplasms diagnosis, Diabetes Mellitus diagnosis, Kidney Failure, Chronic diagnosis, Mass Screening, Prediabetic State diagnosis
- Abstract
Objectives: Early detection of disease enables prompt treatment that can prevent disease progression and costly health outcomes. We report incidence of previously unrecognized disease and investigate the expected effect of early detection and care on health outcomes., Study Design: Population health study based on laboratory evidence., Methods: Laboratory evidence of prediabetes, diabetes, chronic kidney disease, and colorectal cancer was evaluated in an employee and spouse population (65% women; mean [SD] age = 46 [12] years). Expected disease progression was assessed., Results: Annual screening found laboratory evidence for 1185 previously unrecognized cases of prediabetes, 287 cases of diabetes, 73 cases of chronic kidney disease, and 669 positive colorectal screens per 10,000 people., Conclusions: Early identification and appropriate medical care may delay 34 cases of end-stage kidney disease and prevent diabetes-related complications, 210 cases of diabetes, and 3 cases of late-stage colorectal cancer over 5 years per 1000 cases identified.
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- 2019
28. A human bone morphogenetic protein antagonist is down-regulated in renal cancer.
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Blish KR, Wang W, Willingham MC, Du W, Birse CE, Krishnan SR, Brown JC, Hawkins GA, Garvin AJ, D'Agostino RB Jr, Torti FM, and Torti SV
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- Adaptor Proteins, Signal Transducing, Animals, Bone Morphogenetic Protein 7, Carcinoma, Renal Cell genetics, Carcinoma, Renal Cell pathology, Cell Line, Tumor, Cell Proliferation, Gene Expression Regulation, Neoplastic, Humans, Immunohistochemistry, Intracellular Signaling Peptides and Proteins, Kidney metabolism, Kidney Neoplasms pathology, Mice, Phosphorylation, RNA, Messenger genetics, RNA, Messenger metabolism, Signal Transduction, Smad Proteins metabolism, Wnt Proteins metabolism, Wnt3 Protein, Wnt3A Protein, Bone Morphogenetic Proteins antagonists & inhibitors, Down-Regulation genetics, Kidney Neoplasms genetics, Proteins genetics, Transforming Growth Factor beta antagonists & inhibitors
- Abstract
We analyzed expression of candidate genes encoding cell surface or secreted proteins in normal kidney and kidney cancer. This screen identified a bone morphogenetic protein (BMP) antagonist, SOSTDC1 (sclerostin domain-containing-1) as down-regulated in kidney tumors. To confirm screening results, we probed cDNA dot blots with SOSTDC1. The SOSTDC1 message was decreased in 20/20 kidney tumors compared with normal kidney tissue. Immunohistochemistry confirmed significant decrease of SOSTDC1 protein in clear cell renal carcinomas relative to normal proximal renal tubule cells (p < 0.001). Expression of SOSTDC1 was not decreased in papillary and chromophobe kidney tumors. SOSTDC1 was abundantly expressed in podocytes, distal tubules, and transitional epithelia of the normal kidney. Transfection experiments demonstrated that SOSTDC1 is secreted and binds to neighboring cells and/or the extracellular matrix. SOSTDC1 suppresses both BMP-7-induced phosphorylation of R-Smads-1, -5, and -8 and Wnt-3a signaling. Restoration of SOSTDC1 in renal clear carcinoma cells profoundly suppresses proliferation. Collectively, these results demonstrate that SOSTDC1 is expressed in the human kidney and decreased in renal clear cell carcinoma. Because SOSTDC1 suppresses proliferation of renal carcinoma cells, restoration of SOSTDC1 signaling may represent a novel target in treatment of renal clear cell carcinoma.
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- 2008
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29. Decreased survival of B cells of HIV-viremic patients mediated by altered expression of receptors of the TNF superfamily.
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Moir S, Malaspina A, Pickeral OK, Donoghue ET, Vasquez J, Miller NJ, Krishnan SR, Planta MA, Turney JF, Justement JS, Kottilil S, Dybul M, Mican JM, Kovacs C, Chun TW, Birse CE, and Fauci AS
- Subjects
- B-Cell Activation Factor Receptor, B-Cell Maturation Antigen, B-Lymphocytes immunology, Cell Differentiation immunology, Cell Membrane metabolism, Flow Cytometry, Gene Expression Profiling, HIV Infections blood, Humans, Interferons metabolism, Membrane Proteins metabolism, Oligonucleotide Array Sequence Analysis, Phenotype, Receptors, Complement 3d metabolism, fas Receptor biosynthesis, Apoptosis immunology, B-Lymphocytes metabolism, B-Lymphocytes virology, HIV Infections immunology, Receptors, Tumor Necrosis Factor metabolism, Up-Regulation
- Abstract
Human immunodeficiency virus (HIV) infection leads to numerous perturbations of B cells through mechanisms that remain elusive. We performed DNA microarray, phenotypic, and functional analyses in an effort to elucidate mechanisms of B cell perturbation associated with ongoing HIV replication. 42 genes were up-regulated in B cells of HIV-viremic patients when compared with HIV-aviremic and HIV-negative patients, the majority of which were interferon (IFN)-stimulated or associated with terminal differentiation. Flow cytometry confirmed these increases and indicated that CD21(low) B cells, enhanced in HIV-viremic patients, were largely responsible for the changes. Increased expression of the tumor necrosis factor (TNF) superfamily (TNFSF) receptor CD95 correlated with increased susceptibility to CD95-mediated apoptosis of CD21(low) B cells, which, in turn, correlated with HIV plasma viremia. Increased expression of BCMA, a weak TNFSF receptor for B lymphocyte stimulator (BLyS), on CD21(low) B cells was associated with a concomitant reduction in the expression of the more potent BLyS receptor, BAFF-R, that resulted in reduced BLyS binding and BLyS-mediated survival. These findings demonstrate that altered expression of genes associated with IFN stimulation and terminal differentiation in B cells of HIV-viremic patients lead to an increased propensity to cell death, which may have substantial deleterious effects on B cell responsiveness to antigenic stimulation.
- Published
- 2004
30. Antibacterial properties of the sperm-binding proteins and peptides of human epididymis 2 (HE2) family; salt sensitivity, structural dependence and their interaction with outer and cytoplasmic membranes of Escherichia coli.
- Author
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Yenugu S, Hamil KG, Birse CE, Ruben SM, French FS, and Hall SH
- Subjects
- Alkylation, Amino Acid Sequence, Antigens, Surface genetics, Carrier Proteins genetics, Colony Count, Microbial, Cysteine Proteinase Inhibitors pharmacology, Dose-Response Relationship, Drug, Escherichia coli metabolism, Glycopeptides genetics, Humans, Lipocalin 1, Male, Molecular Sequence Data, Oxidation-Reduction, Peptide Fragments chemistry, Protein Isoforms, Semen chemistry, Sequence Homology, Amino Acid, Sodium Chloride, Spermatozoa metabolism, beta-Defensins genetics, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents pharmacology, Antigens, Surface chemistry, Antigens, Surface pharmacology, Carrier Proteins chemistry, Carrier Proteins pharmacology, Cell Membrane Permeability drug effects, Epididymis chemistry, Glycopeptides chemistry, Glycopeptides pharmacology, Peptide Fragments pharmacology, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins pharmacology, Seminal Plasma Proteins, beta-Defensins chemistry, beta-Defensins pharmacology
- Abstract
During passage through the epididymis, sperm interact with secreted epididymal proteins that promote maturation, including the acquisition of motility and fertilization competence. Viewed previously as distinct from sperm maturation, host defence capabilities are now recognized functions of the human epididymis 2 (HE2) family of sperm-binding proteins. We analysed the potent dose and time-dependent bactericidal activity of recombinant HE2alpha, HE2beta1 and HE2beta2 and found that the full-length proteins (10 microg/ml or approximately 1 microM) caused more than a 50% decrease in Escherichia coli colony forming units within 15 min. By contrast, human beta-defensin-1, at a similar concentration, required more than 90 min to exhibit similar antibacterial activity. The epididymis-specific lipocalin, LCN6, failed to kill bacteria. Higher concentrations (25-100 microg/ml) of HE2 proteins and a longer duration of treatment resulted in near total inhibition of bacterial growth. The C-terminal peptides of HE2alpha, HEbeta1 and HEbeta2 proteins exhibited antibacterial activity similar to their full-length counterparts, indicating that the antibacterial activity of HE2 proteins resides in these C-terminal regions. Antibacterial activities of HE2 proteins and peptides were slightly inhibited by NaCl concentrations of up to 150 mM, while human beta-defensin-1 activity was nearly eliminated. Reduction and alkylation of disulphide bonds in HE2 proteins and their C-terminal peptides abolished their antibacterial activity. Consistent with the ability to kill bacteria, full-length HE2 proteins and C-terminal peptides caused rapid dose-dependent permeabilization of outer and cytoplasmic E. coli membranes. A much longer exposure time was required for human beta-defensin-1-mediated permeabilization of membranes, suggesting a possible difference in mode of action compared with the HE2 antibacterial peptides.
- Published
- 2003
- Full Text
- View/download PDF
31. An integrated functional genomics screening program reveals a role for BMP-9 in glucose homeostasis.
- Author
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Chen C, Grzegorzewski KJ, Barash S, Zhao Q, Schneider H, Wang Q, Singh M, Pukac L, Bell AC, Duan R, Coleman T, Duttaroy A, Cheng S, Hirsch J, Zhang L, Lazard Y, Fischer C, Barber MC, Ma ZD, Zhang YQ, Reavey P, Zhong L, Teng B, Sanyal I, Ruben SM, Blondel O, and Birse CE
- Subjects
- Animals, Bone Morphogenetic Proteins chemistry, Bone Morphogenetic Proteins therapeutic use, Cells, Cultured, Diabetes Mellitus drug therapy, Drug Design, Glucose metabolism, Growth Differentiation Factor 2, Growth Differentiation Factors, Humans, Kidney chemistry, Kidney embryology, Kidney metabolism, Male, Mice, Mice, Inbred C57BL, Proteins chemistry, Proteins genetics, Proteins metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Reference Values, Sequence Alignment methods, Sequence Analysis, Protein methods, Systems Integration, Bone Morphogenetic Proteins genetics, Bone Morphogenetic Proteins metabolism, Diabetes Mellitus genetics, Diabetes Mellitus metabolism, Gene Expression Profiling methods
- Abstract
A coordinated functional genomics program was implemented to identify secreted polypeptides with therapeutic applications in the treatment of diabetes. Secreted factors were predicted from a diverse expressed-sequence tags (EST) database, representing >1,000 cDNA libraries, using a combination of bioinformatic algorithms. Subsequently, approximately 8,000 human proteins were screened in high-throughput cell-based assays designed to monitor key physiological transitions known to be centrally involved in the physiology of type 2 diabetes. Bone morphogenetic protein-9 (BMP-9) gave a positive response in two independent assays: reducing phosphoenolpyruvate carboxykinase (PEPCK) expression in hepatocytes and activating Akt kinase in differentiated myotubes. Purified recombinant BMP-9 potently inhibited hepatic glucose production and activated expression of key enzymes of lipid metabolism. In freely fed diabetic mice, a single subcutaneous injection of BMP-9 reduced glycemia to near-normal levels, with maximal reduction observed 30 hours after treatment. BMP-9 represents the first hepatic factor shown to regulate blood glucose concentration. Using a combination of bioinformatic and high-throughput functional analyses, we have identified a factor that may be exploited for the treatment of diabetes.
- Published
- 2003
- Full Text
- View/download PDF
32. An IFN-beta-albumin fusion protein that displays improved pharmacokinetic and pharmacodynamic properties in nonhuman primates.
- Author
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Sung C, Nardelli B, LaFleur DW, Blatter E, Corcoran M, Olsen HS, Birse CE, Pickeral OK, Zhang J, Shah D, Moody G, Gentz S, Beebe L, and Moore PA
- Subjects
- Animals, Antiviral Agents pharmacokinetics, Antiviral Agents pharmacology, Base Sequence, Cell Division drug effects, Cell Line, Female, Gene Expression drug effects, Gene Expression Profiling, Humans, In Vitro Techniques, Macaca mulatta, Oligonucleotide Array Sequence Analysis, RNA, Messenger genetics, RNA, Messenger metabolism, Recombinant Fusion Proteins pharmacokinetics, Recombinant Fusion Proteins pharmacology, Recombinant Proteins, Signal Transduction drug effects, Interferon Type I pharmacokinetics, Interferon Type I pharmacology, Serum Albumin pharmacokinetics, Serum Albumin pharmacology
- Abstract
The long half-life and stability of human serum albumin (HSA) make it an attractive candidate for fusion to short-lived therapeutic proteins. Albuferon (Human Genome Sciences [HGS], Inc., Rockville, MD) beta is a novel recombinant protein derived from a gene fusion of interferon-beta (IFN-beta ) and HSA. In vitro, Albuferon beta displays antiviral and antiproliferative activities and triggers the IFN-stimulated response element (ISRE) signal transduction pathway. Array analysis of 5694 independent genes in Daudi-treated cells revealed that Albuferon beta and IFN-beta induce the expression of an identical set of 30 genes, including 9 previously not identified. In rhesus monkeys administered a dose of 50 microg/kg intravenously (i.v.) or subcutaneously (s.c.) or 300 microg/kg s.c., Albuferon beta demonstrated favorable pharmacokinetic properties. Subcutaneous bioavailability was 87%, plasma clearance at 4.7-5.7 ml/h/kg was approximately 140-fold lower than that of IFN-beta, and the terminal half-life was 36-40 h compared with 8 h for IFN-beta. Importantly, Albuferon beta induced sustained increases in serum neopterin levels and 2',5' mRNA expression. At a molar dose equivalent to one-half the dose of IFN-beta, Albuferon beta elicited comparable neopterin responses and significantly higher 2',5'-OAS mRNA levels in rhesus monkeys. The enhanced in vivo pharmacologic properties of IFN-beta when fused to serum albumin suggest a clinical opportunity for improved IFN-beta therapy.
- Published
- 2003
- Full Text
- View/download PDF
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