16 results on '"Basharat, Sana"'
Search Results
2. Phytoremediation potential modulated by structural and functional traits in a saline desert halophyte Fagonia indica Burm. f
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Naz, Nargis, Fatima, Sana, Hameed, Mansoor, Ahmad, Muhammad Sajid Aqeel, Shah, Syed Mohsan Raza, Ahmad, Farooq, Anwar, Majid, Basharat, Sana, Asghar, Ansa, and Ashraf, Muhammad
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- 2023
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3. Dramatic changes in anatomical traits of a C4 grass Chrysopogon serrulatus Trin. (Poaceae) over a 1000 m elevational gradient
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Fatima, Sana, Hameed, Mansoor, Ahmad, Farooq, Ahmad, Muhammad Sajid Aqeel, Anwar, Majid, Munir, Mahwish, Ashraf, Muhammad, Shah, Syed Mohsan Raza, Basharat, Sana, Ahmad, Iftikhar, and Khalil, Sangam
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- 2023
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4. Defense strategies in Cenchrus biflorus, C. ciliaris, and C. orientalis to cope with aridity, salinity, and cold stress.
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Basharat, Sana, Ahmad, Farooq, Hameed, Mansoor, Naeem, Muhammad Shahbaz, Asghar, Ansa, Ahmad, Muhammad Sajid Aqeel, and Fatima, Sana
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SALINITY , *ECOLOGICAL regions , *BIOLOGICAL fitness , *BIOMASS production , *ABIOTIC stress - Abstract
Three Cenchrus species (C. biflorus, C. ciliaris, and C. orientalis) were collected from different ecological regions in the Punjab and Khyber Pakhtoonkhwa during July to September 2020 to evaluate tolerance to multiple abiotic stresses (aridity, salinity, and cold). Growth and biomass production was the maximum in C. biflorus, C. ciliaris, and C. orientalis under aridity stress. Aerenchyma formation and vascular tissue increased significantly in roots under aridity. In C. ciliaris, aerenchyma formation was recorded under cold stress. Root vascular tissue was higher under normal conditions (26.7%) and aridity (30.4%) stress in C. ciliaris. Stem parenchyma (29.1%) and vascular tissues (35.5%) showed an increase in C. biflorus under aridity, while mechanical tissue (33.6%) increased significantly under salinity stress. In C. biflorus and C. ciliaris, extensive sclerification was recorded in the stelar region under aridity stress. The stem radius of C. orientalis was greatest under salinity (27.0%) and cold (29.1%) stress, while parenchyma tissue was smaller (12.1%) under cold stress. Leaf thickness generally increased under abiotic stresses, and the maximum (43.0%) thickness was recorded in C. biflorus under aridity stress. Cenchrus biflorus, C. ciliaris, and C. orientalis showed strong association among morphological and leaf anatomical traits under aridity stress. Cenchrus orientalis showed high sclerification outside the vascular bundles of the leaf sheath. In saline conditions, vascular bundles were sclerified and enlarged. In and outside the vascular bundles of leaf blades, extensive sclerification was observed under cold stress conditions. Modifications in structural and functional traits were critical for the ecological success of Cenchrus species for survival in multiple environmental stresses. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Phytoremediation through microstructural and functional alterations in alkali weed (Cressa cretica L.) in the hyperarid saline desert.
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Naz, Nargis, Asghar, Ansa, Basharat, Sana, Fatima, Sana, Hameed, Mansoor, Ahmad, Muhammad Sajid Aqeel, Ahmad, Farooq, Shah, Syed Mohsan Raza, and Ashraf, Muhammad
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PHYTOREMEDIATION ,HALOPHYTES ,WATER conservation ,DESERTS ,ENDANGERED species ,WATER storage ,WEEDS - Abstract
Salt excretory halophytes are the major sources of phytoremediation of salt-affected soils. Cressa cretica is a widely distributed halophyte in hypersaline lands in the Cholistan Desert. Therefore, identification of key physio-anatomical traits related to phytoremediation in differently adapted C. cretica populations was focused on. Four naturally adapted ecotypes of non-succulent halophyte Cressa cretica L. form hyper-arid and saline desert Cholistan. The selected ecotypes were: Derawar Fort (DWF, ECe 20.8 dS m
−1 ) from least saline site, Traway Wala Toba (TWT, ECe 33.2 dS m−1 ) and Bailah Wala Dahar (BWD, ECe 45.4 dS m−1 ) ecotypes were from moderately saline sites, and Pati Sir (PAS, ECe 52.4 dS m−1 ) was collected from the highly saline site. The natural population of this species was collected and carefully brought to the laboratory for different structural and functional traits. As a result of high salinity, Na+ , Cl– , K+ , and Ca2+ content significantly increased at root and shoot level. At root level, some distinctive modifications such as increased sclerification in vascular bundles, enlarged vascular bundles, metaxylem vessels, phloem region, and storage parenchyma (cortex) are pivotal for water storage under extreme arid and osmotic condition. At the stem level, enhanced sclerification in outer cortex and vascular bundles, stem cellular area, cortical proportion, metaxylem and phloem area, and at the leaf level, very prominent structural adaptations were thicker and smaller leaves with increased density of salt glands and trichomes at surface, few and large stomata, reduced cortical and mesophyll parenchyma, and narrow xylem vessels and phloem area represent their non-succulent nature. The ecotype collected from hypersaline environments was better adapted regarding growth traits, ion uptake and excretion, succulence, and phytoremediation traits. More importantly, structural and functional traits such as root length and biomass, accumulation of toxic ions along with K+ in root and shoot, accumulation of Ca2+ in shoot and Mg2+ in root, excretion of toxic ions were the highest in this ecotype. In conclusion, all these alterations strongly favor water conservation, which certainly contributes to ecotypes survival under salt-induced physiological drought. Naturally adapted salt tolerant plants provide exceptional material for exploring adaptive mechanisms they use to confront high salt concentrations. Cressa cretica is a hypersaline hyperarid desert colonizer, which was previously underexplored. In the present study, we focused on the new insight on relationship among anatomical modifications, salt accumulation and excretion and phytoremediation potential of this rare species. [ABSTRACT FROM AUTHOR]- Published
- 2024
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6. Genome-Wide Investigation of Class III Peroxidase Genes in Brassica napus Reveals Their Responsiveness to Abiotic Stresses.
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Shah, Obaid Ullah, Khan, Latif Ullah, Basharat, Sana, Zhou, Lingling, Ikram, Muhammad, Peng, Jiantao, Khan, Wasi Ullah, Liu, Pingwu, and Waseem, Muhammad
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RAPESEED ,ABIOTIC stress ,PEROXIDASE ,GENES ,GENE families - Abstract
Brassica napus (B. napus) is susceptible to multiple abiotic stresses that can affect plant growth and development, ultimately reducing crop yields. In the past, many genes that provide tolerance to abiotic stresses have been identified and characterized. Peroxidase (POD) proteins, members of the oxidoreductase enzyme family, play a critical role in protecting plants against abiotic stresses. This study demonstrated a comprehensive investigation of the POD gene family in B. napus. As a result, a total of 109 POD genes were identified across the 19 chromosomes and classified into five distinct subgroups. Further, 44 duplicate events were identified; of these, two gene pairs were tandem and 42 were segmental. Synteny analysis revealed that segmental duplication was more prominent than tandem duplication among POD genes. Expression pattern analysis based on the RNA-seq data of B. napus indicated that BnPOD genes were expressed differently in various tissues; most of them were expressed in roots rather than in other tissues. To validate these findings, we performed RT-qPCR analysis on ten genes; these genes showed various expression levels under abiotic stresses. Our findings not only furnish valuable insights into the evolutionary dynamics of the BnPOD gene family but also serve as a foundation for subsequent investigations into the functional roles of POD genes in B. napus. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Structural and Functional Strategies in Cenchrus Species to Combat Environmental Extremities Imposed by Multiple Abiotic Stresses.
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Basharat, Sana, Ahmad, Farooq, Hameed, Mansoor, Ahmad, Muhammad Sajid Aqeel, Asghar, Ansa, Fatima, Sana, Ahmad, Khawaja Shafique, Shah, Syed Mohsan Raza, Hashem, Abeer, Avila-Quezada, Graciela Dolores, Abd_Allah, Elsayed Fathi, and Abbas, Zaheer
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ABIOTIC stress ,ECOLOGICAL regions ,BIOLOGICAL fitness ,LEAF development ,BIOMASS production ,DROUGHT management - Abstract
Multiple abiotic stresses such as drought, salinity, heat, and cold stress prevailing in natural habitats affect plant growth and development. Different species modify their structural and functional traits to combat these abiotic stresses while growing in stressful environments. Cenchrus species, i.e., Cenchrus pennisetiformis, C. setiger, and C. prieurii are widely distributed grasses found growing all over the world. Samples from natural populations were collected from different ecological regions in the Punjab and Khyber Pakhtoonkhwa that were exposed to aridity, salinity, and cold, while one site was designated as normal control. In the present study, structural and functional modifications of three Cenchrus species under abiotic stresses were evaluated. It was expected that each Cenchrus species may evolve different strategies to cope with multiple abiotic stresses. All Cenchrus species responded differently whether growing in normal environment or stressful conditions. The most remarkable feature for survival in C. pennisetiformis under cold stress was increased inflorescence and increased stem and root lignification. C. prieurii showed better tolerance to saline and cold environments. C. setiger showed better development of leaf sheath anatomical traits. The structural and functional modifications in Cenchrus species such as development of mechanical tissues provided structural support, while dermal and parenchymatous tissues increased water storage capacity and minimized water loss. An increase in the concentration of organic osmolytes and ionic content aids turgor pressure maintenance and ionic content crucial for plant growth and development. It was concluded that structural and functional alterations in all Cenchrus species were very specific and critical for survival under different environmental stresses. The ecological fitness of these species relied on maintenance of growth and biomass production, and the development of mechanical, vascular, dermal and parenchyma tissues under stressful environmental conditions. Moreover, accumulation of beneficial ions (K
+ and Ca2+ ) and organic osmolytes were critical in turgor maintenance, hence survival of Cenchrus spp. [ABSTRACT FROM AUTHOR]- Published
- 2024
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8. A comprehensive analysis of transcriptomic data for comparison of cold tolerance in two Brassica napus genotypes.
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Waseem, Muhammad, Peng, Jiantao, Basharat, Sana, Peng, Qiqi, Li, Yun, Yang, Guangsheng, Cheng, Shanhan, and Liu, Pingwu
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RAPESEED ,REGULATOR genes ,GENOTYPES ,DATA analysis ,GENETIC transcription regulation ,CHITIN ,NO-tillage - Abstract
Brassica napus is an important oil crop and cold stress severely limits its productivity. To date, several studies have reported the regulatory genes and pathways involved in cold‐stress responses in B. napus. However, transcriptome‐scale identification of the regulatory genes is still lacking. In this study, we performed comparative transcriptome analysis of cold‐tolerant C18 (CT – C18) and cold‐sensitive C6 (CS – C6) Brassica napus genotypes under cold stress for 7 days, with the primary purpose of identifying cold‐responsive transcription in B. napus. A total of 6061 TFs belonging to 58 families were annotated in the B. napus genome, of which 3870 were expressed under cold stress in both genotypes. Among these, 451 TFs were differentially expressed (DE), with 21 TF genes expressed in both genotypes. Most TF members of the MYB (26), bHLH (23), and NAC (17) families were significantly expressed in the CT – C18 genotype compared with the CS – C6 B. napus genotype. GO classification showed a significant role in transcription regulation, DNA‐binding transcription factor activity, response to chitin, and the ethylene‐activated signaling pathway. KEGG pathway annotation revealed these TFs are involved in regulating more pathways, resulting in more tolerance. In conclusion, the results provide insights into the molecular regulation mechanisms of B. napus in response to freezing treatment, expanding our understanding of the complex molecular mechanisms in plants' response to freezing stress. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Development of simple sequence repeat markers for sugarcane from data mining of expressed sequence tags.
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Huahao Jiang, Waseem, Muhammad, Yong Wang, Basharat, Sana, Xia Zhang, Yun Li, and Pingwu Liu
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MICROSATELLITE repeats ,SUGARCANE ,DATA mining ,CROPS ,GENETIC distance ,CONSUMPTION (Economics) - Abstract
Sugarcane (Saccharum spp. hybrids) is a worldwide acclaimed important agricultural crop used primarily for sugar production and biofuel. Sugarcane’s genetic complexity, aneuploidy, and extreme heterozygosity make it a challenging crop in developing improved varieties. The molecular breeding programs promise to develop nutritionally improved varieties for both direct consumption and commercial application. Therefore, to address these challenges, the development of simple sequence repeats (SSRs) has been proven to be a powerful molecular tool in sugarcane. This study involved the collection of 285216 expressed sequence tags (ESTs) from sugarcane, resulting in 23666 unigenes, including 4547 contigs. Our analysis identified 4120 unigenes containing a total of 4960 SSRs, with the most abundant repeat types being monomeric (44.33%), dimeric (13.10%), and trimeric (39.68%). We further chose 173 primers to analyze the banding pattern in 10 sugarcane accessions by PAGE analysis. Additionally, functional annotation analysis showed that 71.07%, 53.6%, and 10.3% unigenes were annotated by Uniport, GO, and KEGG, respectively. GO annotations and KEGG pathways were distributed across three functional categories: molecular (46.46%), cellular (33.94%), and biological pathways (19.6%). The cluster analysis indicated the formation of four distinct clusters among selected sugarcane accessions, with maximum genetic distance observed among the varieties. We believe that these EST-SSR markers will serve as valuable references for future genetic characterization, species identification, and breeding efforts in sugarcane. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Morpho-anatomical determinants of yield potential in Olea europaea L. cultivars belonging to diversified origin grown in semi-arid environments.
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Ahmad, Iftikhar, Sohail, Mohammad, Hameed, Mansoor, Fatima, Sana, Ahmad, Muhammad Sajid Aqeel, Ahmad, Farooq, Mehmood, Ansar, Basharat, Sana, Asghar, Ansa, Shah, Syed Mohsan Raza, and Ahmad, Khawaja Shafique
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OLIVE ,CULTIVARS ,PLANT germplasm ,FRUIT yield ,PLANT performance ,PHLOEM - Abstract
Plant performance is mainly estimated based on plant architecture, leaf features and internal microstructural changes. Olive (Olea europaea L.) is a drought tolerant, oil yielding, and medium sized woody tree that shows specific structural and functional modifications under changing environment. This study was aimed to know the microstructural alteration involving in growth and yield responses of different Olive cultivars. Eleven cultivars were collected all over the world and were planted at Olive germplasm unit, Barani Agricultural Research Institute, Chakwal (Punjab) Pakistan, during September to November 2017. Plant material was collected to correlate morpho-anatomical traits with yield contributing characteristics. Overall, the studied morphological characters, yield and yield parameters, and root, stem and leaf anatomical features varied highly significantly in all olive cultivars. The most promising cultivar regarding yield was Erlik, in which plant height seed weight and root anatomical characteristics, i.e., epidermal thickness and phloem thickness, stem features like collenchymatous thickness, phloem thickness and metaxylem vessel diameter, and leaf traits like midrib thickness, palisade cell thickness a phloem thickness were the maximum. The second best Hamdi showed the maximum plant height, fruit length, weight and diameter and seed length and weight. It also showed maximum stem phloem thickness, midrib and lamina thicknesses, palisade cell thickness. Fruit yield in the studied olive cultivars can be more closely linked to high proportion of storage parenchyma, broader xylem vessels and phloem proportion, dermal tissue, and high proportion of collenchyma. [ABSTRACT FROM AUTHOR]
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- 2023
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11. Allelochemicals extract of star fruit (Averrhoa carambola L.) modulates wheat growth through alterations in anatomical architecture.
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Shah, Syed Mohsan Raza, Fatima, Sana, Hameed, Mansoor, Basharat, Sana, Ahmad, Muhammad Sajid Aqeel, Ahmad, Farooq, Asghar, Ansa, Anwar, Majid, Yasmin, Fozia, Ashraf, Muhammad, and Shafqat, Jazab
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ALLELOCHEMICALS ,FRUIT extracts ,CROP yields ,LEAF growth ,WEED control ,CAPABILITY maturity model ,ALLELOPATHY - Abstract
Context: Allelopathy is recognised as a potential technology to control weeds, and could also be a suitable approach for enhancement of crop yield. Aims: The study was conducted to investigate the allelopathic role of Averrhoa carambola leaf extract on growth, anatomical and physiological features of three wheat lines, namely 3094, 7076 and A2011. Methods: Three dilutions i.e. 0% (control), 15% and 30% of the leaf aqueous extract were applied at 15 day intervals (total five applications) on wheat lines until maturity. Key results: All wheat lines showed differential behaviour to allelochemicals of A. carambola leaf extract. Increased root area was accompanied by a high proportion of storage parenchyma tissues and enlarged vascular bundles in line 3094. Disintegration of root cortical parenchyma and complete transformation of chlorenchyma into sclerenchyma in stem was recorded in all wheat lines, particularly at the highest concentration of leaf extract. Line 7076 showed very different behaviour, as it possessed a proportionally enlarged root cortex, enlarged stem vascular bundles and increased leaf thickness, primarily at the highest concentration of leaf extract. Line A2011 was relatively more sensitive, indicating a significant reduction (P < 0.05) in root and stem area and deformed leaves. Conclusions: A low concentration (15%) of leaf extract promoted growth and development, whereas a higher concentration caused significant reduction in growth and anatomical attributes. Implications: A lower dose of Averrhoa leaf extract promoted growth and development in all wheat lines, and hence can be used as a growth promoter. A higher concentration is important for eradicating unwanted plants. Wheat lines were treated with allelochemicals extracted from A. carambola. A low treatment concentration led to increased root area, accompanied by a high proportion of storage parenchyma tissues, and enlarged vascular bundles. Using a high extract concentration, root cortical parenchyma collapsed while stem chlorenchyma was transformed to sclerenchyma. Line 7076 responded differently, as it possessed an enlarged root cortical proportion, enlarged stem vascular bundles and increased leaf thickness. A low concentration (15%) of leaf extract promoted growth, whereas a higher concentration (30%) caused significant reduction in morpho-anatomical traits. [ABSTRACT FROM AUTHOR]
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- 2023
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12. Dramatic changes in anatomical traits of a C4 grass Chrysopogon serrulatus Trin. (Poaceae) over a 1000 m elevational gradient.
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Fatima, Sana, Hameed, Mansoor, Ahmad, Farooq, Ahmad, Muhammad Sajid Aqeel, Anwar, Majid, Munir, Mahwish, Ashraf, Muhammad, Shah, Syed Mohsan Raza, Basharat, Sana, Ahmad, Iftikhar, and Khalil, Sangam
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PLANT morphology ,SPECIES distribution ,ALTITUDES ,GRASSES ,FOOTHILLS - Abstract
Chrysopogon serrulatus (false beard-grass) is a dominant component of vegetation in the foothills of the Himalayas. To study whole plant morphology, individuals of C. serrulatus were collected from three plots at each of six locations spanning from 400 to 1,400 m. The population colonizing the highest elevation showed noticeable morphological modifications in different plant organs. Roots showed increased xeromorphy, specifically increased metaxylem number and area. In the stem, especially outside of the vascular tissue, there was intensive sclerification indicative of increased xeromorphy as a survival strategy. At the highest elevation, leaves were wider; aerenchyma formation and increased sclerification were noted in the leaf sheath; and a greater proportion of storage parenchyma was observed in the leaf blade, all indicators of succulence. In contrast, leaves at lower elevations had xeric morphological features such as increased epidermal thickness, sclerification and more developed metaxylem area. In conclusion, shifting of morphological features in below- and above-ground plant parts of C. serrulatus were linked to shifts in environmental factors along this elevation gradient, thus enabling the successful distribution of this species along this elevation gradient. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Correction: Riaz et al. Dactyloctenium aegyptium (L.) Willd. (Poaceae) Differentially Responds to Pre- and Post-Emergence Herbicides through Micro-Structural Alterations. Agriculture 2022, 12 , 1831.
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Riaz, Sidra, Basharat, Sana, Ahmad, Farooq, Hameed, Mansoor, Fatima, Sana, Ahmad, Muhammad Sajid Aqeel, Shah, Syed Mohsan Raza, Asghar, Ansa, El-Sheikh, Mohamed A., and Kaushik, Prashant
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RESEARCH personnel ,HERBICIDES ,GRASSES ,AGRICULTURE ,WISHES - Abstract
This correction notice addresses an error in the affiliation of one of the authors, Prashant Kaushik, in a paper titled "Dactyloctenium aegyptium (L.) Willd. (Poaceae) Differentially Responds to Pre- and Post-Emergence Herbicides through Micro-Structural Alterations." The correct affiliation for Prashant Kaushik is "Independent Researcher, 46022 Valencia, Spain." The authors assure that this correction does not affect the scientific conclusions of the paper. The correction has been approved by the Academic Editor and the original publication has been updated. [Extracted from the article]
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- 2024
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14. Effect of Polyglucosamine on Weight Loss and Metabolic Parameters in Overweight and Obesity: A Systematic Review and Meta-Analysis.
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Perna, Simone, Basharat, Sana N. M., Ali, Khawla F., Eid, Abdulla, Gasparri, Clara, Infantino, Vittoria, Faliva, Milena A., Naso, Maurizio, Cazzola, Roberta, Cestaro, Benvenuto, and Rondanelli, Mariangela
- Abstract
The use of dietary supplements for weight loss has gained significant momentum. Polyglucosamine, a chitosan derivative, is a dietary supplement increasingly used for weight loss. In this meta-analysis, we systematically summarized and quantified the key findings of four randomized, placebo-controlled clinical trials examining the effects of polyglucosamine supplementation and caloric restriction, and physical activity on body weight, body mass index (BMI), and waist circumference in subjects with overweight and obesity. The control group was set with a physical activity from 6–7 MET-h/week activity and up to 21 MET-h/week activity with caloric restriction. Compliance in the latter trials was reported via a follow-up questionnaire with the individual participants. The analysis included 399 subjects followed for a period ranging from 12 weeks to one year. Subjects' age ranged from 21–75 years, BMI from 26–45 kg/m
2 , and all were white European or Caucasian in ethnicity. The meta-analyzed mean differences for random effects showed that polyglucosamine supplementation improves weight loss by −1.78 kg [−2.78, −0.79], BMI by −1.52 kg/m2 [−3.58, 0.54], and improves waist circumference reduction by −1.45 cm [−2.77, −0.12]. In conclusion, the use of polyglucosamine supplementation in conjunction with lifestyle behavioral therapies can be effective for weight reduction. Further studies are needed to examine the long-term effects of polyglucosamine supplementation on weight loss and other metabolic parameters [ABSTRACT FROM AUTHOR]- Published
- 2020
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15. Structural responses of differentially adapted Cenchrus setigerus Vahl ecotypes to water deficit.
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Sarwar, Yasmin, Asghar, Ansa, Hameed, Mansoor, Fatima, Sana, Ahmad, Farooq, Ahmad, Muhammad Sajid Aqeel, Ashraf, Muhammad, Shah, Syed Mohsan Raza, Basharat, Sana, Iqbal, Ummar, Irshad, Muhammad, and Ahmad, Iftikhar
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BIOMASS production , *TREE farms , *PLANT growth , *WATER conservation , *STOMATA , *FOLIAGE plants - Abstract
Two ecotypes of Cenchrus setigerus Vahl (birdwood grass) were collected from dry mountains surrounding hyper-saline Kalar Kahar Lake and Gatwala artificial forest plantation. The ramets of the two ecotypes were established in pots for 15 days and then subjected to 100% FC (control) or 75% and 50% FC (field capacity) levels. Growth attributes such as plant height, tillers per plant, leaves per plant, shoot fresh and dry weights were severely affected while root length was the only attribute that increased in both ecotypes under moisture stress. Root anatomical attributes like cortical and pith parenchyma, and vascular region thickness increased in both ecotypes under water stress. Root radius increased in the Faisalabad ecotype at 75% FC, while increased in Salt Range ecotype only at 50% FC. Stem cellular region, sclerenchymatous cell area, vascular bundle area and metaxylem area increased significantly under moderate and severe water deficit only in the Faisalabad ecotype. The Salt Range ecotype exhibited intensive sclerification and large vascular tissue at 50% FC. Leaf anatomical attributes like epidermal cell area, bundle sheath thickness, sclerenchyma thickness and its cell area, and, vascular bundles area significantly increased in the Salt Range ecotype with increasing water deficit. The Faisalabad ecotype showed significant increase in vascular bundle area, metaxylem area and adaxial stomatal area. These findings indicated that both C. setigerus ecotypes mainly relied on water conservation and survival rather than maintaining growth and biomass production. The anatomical modifications at root, stem and leaf levels ensured survival of C. setigerus ecotypes in extreme arid conditions. • Growth attributes were severely affected while root length increased under stress • Root radius increased in the Faisalabad ecotype at 75% FC, while at 50% FC in Salt Range ecotype • Stem area, sclerification and vascular bundle area increased only in Faisalabad ecotype • The Salt Range ecotype exhibited intensive sclerification in leaves and large vascular tissue at 50% FC • The Faisalabad ecotype showed an increase in vascular bundle area, metaxylem area and adaxial stomatal area [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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16. Development of simple sequence repeat markers for sugarcane from data mining of expressed sequence tags.
- Author
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Jiang H, Waseem M, Wang Y, Basharat S, Zhang X, Li Y, and Liu P
- Abstract
Sugarcane ( Saccharum spp. hybrids) is a worldwide acclaimed important agricultural crop used primarily for sugar production and biofuel. Sugarcane's genetic complexity, aneuploidy, and extreme heterozygosity make it a challenging crop in developing improved varieties. The molecular breeding programs promise to develop nutritionally improved varieties for both direct consumption and commercial application. Therefore, to address these challenges, the development of simple sequence repeats (SSRs) has been proven to be a powerful molecular tool in sugarcane. This study involved the collection of 285216 expressed sequence tags (ESTs) from sugarcane, resulting in 23666 unigenes, including 4547 contigs. Our analysis identified 4120 unigenes containing a total of 4960 SSRs, with the most abundant repeat types being monomeric (44.33%), dimeric (13.10%), and trimeric (39.68%). We further chose 173 primers to analyze the banding pattern in 10 sugarcane accessions by PAGE analysis. Additionally, functional annotation analysis showed that 71.07%, 53.6%, and 10.3% unigenes were annotated by Uniport, GO, and KEGG, respectively. GO annotations and KEGG pathways were distributed across three functional categories: molecular (46.46%), cellular (33.94%), and biological pathways (19.6%). The cluster analysis indicated the formation of four distinct clusters among selected sugarcane accessions, with maximum genetic distance observed among the varieties. We believe that these EST-SSR markers will serve as valuable references for future genetic characterization, species identification, and breeding efforts in sugarcane., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Jiang, Waseem, Wang, Basharat, Zhang, Li and Liu.)
- Published
- 2023
- Full Text
- View/download PDF
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