31 results on '"Assar, Rodrigo"'
Search Results
2. ADAR1 Transcriptome editing promotes breast cancer progression through the regulation of cell cycle and DNA damage response
- Author
-
Sagredo, Eduardo A., Sagredo, Alfredo I., Blanco, Alejandro, Rojas De Santiago, Pamela, Rivas, Solange, Assar, Rodrigo, Pérez, Paola, Marcelain, Katherine, and Armisén, Ricardo
- Published
- 2020
- Full Text
- View/download PDF
3. Methotrexate pharmacogenetics in Uruguayan adults with hematological malignant diseases
- Author
-
Giletti, Andrea, Vital, Marcelo, Lorenzo, Mariana, Cardozo, Patricia, Borelli, Gabriel, Gabus, Raúl, Martínez, Lem, Díaz, Lilian, Assar, Rodrigo, Rodriguez, María Noel, and Esperón, Patricia
- Published
- 2017
- Full Text
- View/download PDF
4. GERO Cohort Protocol, Chile, 2017–2022: Community-based Cohort of Functional Decline in Subjective Cognitive Complaint elderly
- Author
-
Slachevsky, Andrea, Zitko, Pedro, Martínez-Pernía, David, Forno, Gonzalo, Court, Felipe A., Lillo, Patricia, Villagra, Roque, Duran-Aniotz, Claudia, Parrao, Teresa, Assar, Rodrigo, Orellana, Paulina, Toledo, Carolina, Rivera, Rodrigo, Ibañez, Agustín, Parra, Mario A., González-Billault, Christian, Amieva, Helena, and Thumala, Daniela
- Published
- 2020
- Full Text
- View/download PDF
5. Leader Cells Define Directionality of Trunk, but Not Cranial, Neural Crest Cell Migration
- Author
-
Richardson, Jo, Gauert, Anton, Briones Montecinos, Luis, Fanlo, Lucía, Alhashem, Zainalabdeen Mohmammed, Assar, Rodrigo, Marti, Elisa, Kabla, Alexandre, Härtel, Steffen, and Linker, Claudia
- Published
- 2016
- Full Text
- View/download PDF
6. Modeling acclimatization by hybrid systems: Condition changes alter biological system behavior models
- Author
-
Assar, Rodrigo, Montecino, Martín A., Maass, Alejandro, and Sherman, David J.
- Published
- 2014
- Full Text
- View/download PDF
7. Implementing biological hybrid systems: Allowing composition and avoiding stiffness
- Author
-
Assar, Rodrigo and Sherman, David J.
- Published
- 2013
- Full Text
- View/download PDF
8. Reusing and composing models of cell fate regulation of human bone precursor cells
- Author
-
Assar, Rodrigo, Leisewitz, Andrea V., Garcia, Alice, Inestrosa, Nibaldo C., Montecino, Martín A., and Sherman, David J.
- Published
- 2012
- Full Text
- View/download PDF
9. The Effect of Child Trauma on the Relation between Psychological Well-Being and Depressive Symptoms in Chilean University Students.
- Author
-
Barros, Paulina, Assar, Rodrigo, Botto, Alberto, Leighton, Caroline, Quevedo, Yamil, and Jiménez, Juan Pablo
- Subjects
MENTAL depression ,MENTAL depression risk factors ,ADVERSE childhood experiences ,WELL-being ,RESEARCH ,PSYCHOLOGICAL abuse ,STRUCTURAL equation modeling ,SCIENTIFIC observation ,ANALYSIS of variance ,CROSS-sectional method ,RESEARCH methodology ,SELF-evaluation ,AGE distribution ,REGRESSION analysis ,UNDERGRADUATES ,RISK assessment ,T-test (Statistics) ,COMPARATIVE studies ,PEARSON correlation (Statistics) ,SEX distribution ,QUESTIONNAIRES ,RESEARCH funding ,UNIVERSITIES & colleges ,DESCRIPTIVE statistics ,STATISTICAL sampling ,DATA analysis software ,ADULTS - Abstract
(1) Background: There is consistent evidence of the impact of early adverse experiences on mental health in adulthood, especially as a risk factor for depression. However, their influence on positive aspects of mental health such as well-being has been less extensively studied. Therefore, this study aims to investigate the effect of traumatic childhood experiences on the relationship between depression and psychological well-being in a sample of university students. (2) Methods: The Childhood Trauma Questionnaire—Short Form (CTQ-SF), the Beck Depression Inventory (BDI-IA), and Ryff's psychological well-being scale were administered to 700 Chilean university students. Several regression models were used to analyze the interaction between variables, with multivariate SEM being applied to hierarchize the relationships found. (3) Results: Emotional Neglect and Abuse stand out as the types of maltreatment with the greatest impact on mental health, associated first with a decrease in the self-acceptance dimension of psychological well-being and then with depressive symptomatology in adulthood. (4) Conclusions: Results provide evidence that early trauma has an important impact on mental health, increasing the risk of depression, however, its impact is greater on positive aspects of health, such as self-acceptance, a fundamental element in the construction of psychological well-being. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
10. Construction and validation of a scale of losses experienced in old age (SLO).
- Author
-
Thumala-Dockendorff, Daniela, Assar, Rodrigo, Wenk, Elisabeth, Arnold-Cathalifaud, Marcelo, Villagra, Roque, Lillo, Patricia, and Slachevsky, Andrea
- Subjects
- *
EXPERIMENTAL design , *SEMANTICS , *PILOT projects , *CONFIDENCE intervals , *RESEARCH methodology , *RESEARCH methodology evaluation , *LOSS (Psychology) , *FUNCTIONAL status , *INDEPENDENT living , *FACTOR analysis , *DESCRIPTIVE statistics , *INTERDISCIPLINARY education , *ODDS ratio , *SOCIAL integration ,RESEARCH evaluation - Abstract
Individuals tend to accumulate a larger number of losses in old age than in prior stages of life, leading to major consequences for the well-being of older adults. Research has generally focused on a single type of loss, with only a handful of studies exploring the accumulation of losses in old age and examining which and how many losses are experienced, and how intense they are. The lack of instruments that reflect the diversity of the losses that individuals can sustain at this stage of life makes it difficult to accumulate knowledge in this field, since it is not possible to characterize this experience or establish associations with other significant variables. Based on a prior categorization of six types of losses, developed upon the basis of reports by older adults, we sought to construct and validate a Scale of Losses Experienced in Old Age (SLO). This scale underwent semantic validation, followed by content validation. Afterward, for the construct validation process, it was administered to a pilot sample of 249 middle-income community-dwelling older adults. The confirmatory factor analysis yielded adequate values (RMSEA = 0.060, CFI = 0.969, TLI = 0.961, SRMR = 0.075), with internal consistency also being suitable (ordinal alpha = 0.856). These values warrant recommending the use of the SLO, since it offers a view of losses in old age that is both broad and detailed, thus facilitating the production of cumulative and comparable knowledge in the field of psychogerontology while also making it possible to establish interdisciplinary connections. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
11. Genome-wide identification of new Wnt/β-catenin target genes in the human genome using CART method
- Author
-
Inestrosa Nibaldo C, Martínez Servet, Pavez Leonardo, González Mauricio, Aravena Andrés, Colombres Marcela, Assar Rodrigo, Hödar Christian, and Maass Alejandro
- Subjects
Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The importance of in silico predictions for understanding cellular processes is now widely accepted, and a variety of algorithms useful for studying different biological features have been designed. In particular, the prediction of cis regulatory modules in non-coding human genome regions represents a major challenge for understanding gene regulation in several diseases. Recently, studies of the Wnt signaling pathway revealed a connection with neurodegenerative diseases such as Alzheimer's. In this article, we construct a classification tool that uses the transcription factor binding site motifs composition of some gene promoters to identify new Wnt/β-catenin pathway target genes potentially involved in brain diseases. Results In this study, we propose 89 new Wnt/β-catenin pathway target genes predicted in silico by using a method based on multiple Classification and Regression Tree (CART) analysis. We used as decision variables the presence of transcription factor binding site motifs in the upstream region of each gene. This prediction was validated by RT-qPCR in a sample of 9 genes. As expected, LEF1, a member of the T-cell factor/lymphoid enhancer-binding factor family (TCF/LEF1), was relevant for the classification algorithm and, remarkably, other factors related directly or indirectly to the inflammatory response and amyloidogenic processes also appeared to be relevant for the classification. Among the 89 new Wnt/β-catenin pathway targets, we found a group expressed in brain tissue that could be involved in diverse responses to neurodegenerative diseases, like Alzheimer's disease (AD). These genes represent new candidates to protect cells against amyloid β toxicity, in agreement with the proposed neuroprotective role of the Wnt signaling pathway. Conclusions Our multiple CART strategy proved to be an effective tool to identify new Wnt/β-catenin pathway targets based on the study of their regulatory regions in the human genome. In particular, several of these genes represent a new group of transcriptional dependent targets of the canonical Wnt pathway. The functions of these genes indicate that they are involved in pathophysiology related to Alzheimer's disease or other brain disorders.
- Published
- 2010
- Full Text
- View/download PDF
12. Design and preliminary model of an integration platform of clinical and genomic data
- Author
-
Araneda, Patricio and Assar, Rodrigo
- Published
- 2018
- Full Text
- View/download PDF
13. Subjective memory complaints and cognitive decline
- Author
-
Slachevsky, Andrea, Parrao, Teresa, Lillo, Patricia, Forno, Gonzalo, Villagra, Roque, Thumala, Daniela, Amieva, Helene, Zitko, Pedro, Galvez, Rodrigo, and Assar, Rodrigo, Wenk, Elisabeth
- Published
- 2017
14. Leader cells define directionality of trunk, but not cranial, neural crest migration
- Author
-
Richardson, Jo, Gauert, Anton, Montecinos, Luis Briones, Fanlo, Lucía, Alhashem, Zainalabdeen Mohmammed, Assar, Rodrigo, Marti, Elisa, Kabla, Alexandre, Härtel, Steffen, and Linker, Claudia
- Subjects
QL0951 - Abstract
Collective cell migration is fundamental for life and a hallmark of cancer. Neural crest (NC) cells migrate collectively, but the mechanisms governing this process remain controversial. Previous analyses in Xenopus indicate that cranial NC (CNC) cells are a homogeneous population relying on cell-cell interactions for directional migration, while chick embryo analyses suggest a heterogeneous population with leader cells instructing directionality. Our data in chick and zebrafish embryos show that CNC cells do not require leader cells for migration and all cells present similar migratory capacities. In contrast, laser ablation of trunk NC (TNC) cells shows that leader cells direct movement and cell-cell contacts are required for migration. Moreover, leader and follower identities are acquired before the initiation of migration and remain fixed thereafter. Thus, two distinct mechanisms establish the directionality of CNC cells and TNC cells. This implies the existence of multiple molecular mechanisms for collective cell migration.
- Published
- 2016
15. STUDY PROTOCOL FOR THE GERO COHORT OF COGNITIVE COMPLAINT/MILD COGNITIVE IMPAIRMENT, CHILE, 2017–2019
- Author
-
Slachevsky, Andrea, Martínez-Pernía, David, Forno, Gonzalo, Zitko, Pedro, Parrao, Teresa, Assar, Rodrigo, Galvez, Rodrigo, Haag, Paulina, Navarro, Jazmin, Orellana, Paulina, Duran-Aniotz, Claudia, Wenk, Elizabeth, Villagra, Roque, Lillo, Patricia, Gonzalez, Christian, and Thumala, Daniela
- Published
- 2018
- Full Text
- View/download PDF
16. Using network and functional enrichment clustering analyses to find therapeutic targets for breast cancer: The role of cyclin‐dependent kinase 2.
- Author
-
Valenzuela, Luis and Assar, Rodrigo
- Subjects
- *
BREAST cancer , *CYCLIN-dependent kinases , *BIOLOGICAL tags , *CANCER cells , *GENE expression - Abstract
Population aging is rapidly increasing in developing countries; thus, covering medical needs for breast cancer diagnosis and treatment is a priority in Latin America. We describe an approach for integrating differential expression analysis, biological pathway enrichment, in silico transcription‐binding sites and network topology, to find key genes that may be used as biomarkers or therapeutic targets. This approach is based on publicly available data from microarrays of the MCF‐7 breast cancer cell line treated with estrogen. We found significant estrogen‐responsive genes, which were used as nodes to construct networks based on protein‐protein interactions reported in the literature. Then, we conducted a topology analysis of the networks, revealing the most‐connected nodes, ie, those responsible for maintaining the network structure corresponding to genes with well‐acknowledged functions in G1/S cell cycle transition, such as cyclin‐dependent kinase 2 (CDK2), which has been proposed as a therapeutic target in classical biochemical studies. In addition, analyses of biological pathway enrichment and in silico transcription‐binding sites support the biological meaning and importance of these key genes and help to decide the best target genes. Therefore, we postulate that the integrative bioinformatics approach shown here, unlike the classical bioinformatics approach that only includes differentially expressed genes and enriched biological pathways, can be applied as an approach for finding novel biomarkers and/or therapeutic target genes for nonresponsive treatments. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
17. Psychotherapy and Genetic Neuroscience: An Emerging Dialog.
- Author
-
Jiménez, Juan P., Botto, Alberto, Herrera, Luisa, Leighton, Caroline, Rossi, José L., Quevedo, Yamil, Silva, Jaime R., Martínez, Felipe, Assar, Rodrigo, Salazar, Luis A., Ortiz, Manuel, Ríos, Ulises, Barros, Paulina, Jaramillo, Karina, and Luyten, Patrick
- Subjects
GENETICS ,DIATHESIS-stress model (Psychology) - Abstract
Recent research in psychiatric genetics has led to a move away from simple diathesis-stress models to more complex models of psychopathology incorporating a focus on gene–environment interactions and epigenetics. Our increased understanding of the way biology encodes the impact of life events on organisms has also generated more sophisticated theoretical models concerning the molecular processes at the interface between “nature” and “nurture.” There is also increasing consensus that psychotherapy entails a specific type of learning in the context of an emotional relationship (i.e., the therapeutic relationship) that may also lead to epigenetic modifications across different therapeutic treatment modalities. This paper provides a systematic review of this emerging body of research. It is concluded that, although the evidence is still limited at this stage, extant research does indeed suggest that psychotherapy may be associated with epigenetic changes. Furthermore, it is argued that epigenetic studies may play a key role in the identification of biomarkers implicated in vulnerability for psychopathology, and thus may improve diagnosis and open up future research opportunities regarding the mechanism of action of psychotropic drugs as well as psychotherapy. We review evidence suggesting there may be important individual differences in susceptibility to environmental input, including psychotherapy. In addition, given that there is increasing evidence for the transgenerational transmission of epigenetic modifications in animals and humans exposed to trauma and adversity, epigenetic changes produced by psychotherapy may also potentially be passed on to the next generation, which opens up new perspective for prevention science. We conclude this paper stressing the limitations of current research and by proposing a set of recommendations for future research in this area. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
18. Genome-wide annotation of human Wnt target genes using CART: toward treatments of degenerative diseases
- Author
-
Assar, Rodrigo, Models and Algorithms for the Genome ( MAGNOME), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), GeneExpression Systems, Appasani Research Conferences (ARCEI.org) , and Consiglio Nazionale delle Ricerche (CNR), Inria Bordeaux - Sud-Ouest, and Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] - Abstract
International audience; The Wnt/beta signaling pathway has an important role in neuroprotection and bone formation. The activation of this pathway induces the accumulation of beta-catenin in the nucleus of the cell, which interacts with a TCF/LEF transcription factor to activate the expression of the so called Wnt target genes. Some proteins implied in neuroprotection such as CamK4, and other ones related to bone formation, e.g. Runx2, are Wnt targets. Modeling the stimulatory effects of the Wnt pathway on neuroprotection functions and bone formation allow us to analyze in silico the physiological responses to treatments of degenerative disorders such as Alzheimer's disease and osteoporosis. To obtain in-silico new Wnt target genes and insights about regulation, we built an statistical method based on CART. It is trained by the information about the transcription factor binding site motifs in the nearby regions of known Wnt target genes. Between the new Wnt target, we found genes that protect cells against amyloid beta toxicity: e.g. calcium/calmodulin-dependent protein kinase IV (CamK4), for which there exist strong evidences for up-regulation in response to both Wnt ligands and lithium.
- Published
- 2011
19. Genome-wide identification of new Wnt/beta-catenin target genes in the human genome using CART method
- Author
-
Assar, Rodrigo, Christian, Hodar, Marcela, Colombres, Models and Algorithms for the Genome ( MAGNOME), Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Laboratorio de Bioinformática y Expresión Génica, Centro de Regulación Celular y Patología 'Joaquín V. Luco' (CRCP), Pontificia Universidad Católica de Chile (UC), Gmds/IBS Working Groups 'Statistical methods in bioinformatics' and 'Mathematical models in medicine' (Tim Beissbarth, Universität Göttingen, Julien Gagneur, EMBL Heidelberg, Nicole Radde, Universität Stuttgart, and Ingo Röder, TU Dresden)
- Subjects
Wnt ,[STAT.AP]Statistics [stat]/Applications [stat.AP] ,CamK4 ,Alzheimer ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] - Abstract
International audience; Nowadays the stored information of non-coding human genome regions is being strongly exploited to model the regulation processes. The key to explain complex biological responses, to anticipate and to treat diseases is to understand the regulation factors and the interactions with genes. I summarize the recently published work, developed by C. Hodar, myself, M. Colombres et al. It uses a statistical point of view to study the Wnt pathway that is mainly implicated in cell differentiation, and diseases such as Alzheimer`s (AD) and cancer. We obtain insights on new human genome regions being relevant to control AD or other neurodegenerative disorders. We construct a statistical method based on multiple Classification Trees (CART) to identify new Wnt/beta-catenin pathway target genes, by only using information of known Wnt target (positive) genes and it considers as decision variables the presence of transcription factor binding site motifs in the upstream region of each gene. We propose 89 new Wnt/beta-catenin pathway target genes, we found a group expressed in brain tissue that could be involved in diverse responses to neurodegenerative diseases, like AD. These genes represent new candidates to protect cells against amyloid beta; toxicity, maybe associated to the neuroprotective role of the Wnt signaling pathway and other ones related with cancer. The most relevant were calcium/calmodulin-dependent protein kinase IV (CamK4), with strong evidences for up-regulation in response to both Wnt ligands and lithium, and tropomyosin 1 (alpha) that is associated with neurofibrillary pathology of AD. Our strategy proved to be effective and robust to identify new Wnt/beta-catenin pathway targets. In silico results were biologically validated by RT-qPCR in a sample. Several of the genes represent a new group of transcriptional dependent targets of the canonical Wnt pathway, that could be involved in pathophysiology related to Alzheimer.
- Published
- 2010
20. Genetic Diversity and Virulence Determinants of Escherichia coli Strains Isolated from Patients with Crohn's Disease in Spain and Chile.
- Author
-
Céspedes, Sandra, Saitz, Waleska, Canto, Felipe Del, Fuente, Marjorie De la, Quera, Rodrigo, Hermoso, Marcela, Muñoz, Rául, Ginard, Daniel, Khorrami, Sam, Girón, Jorge, Assar, Rodrigo, Rosselló-Mora, Ramón, and Vidal, Roberto M.
- Subjects
ESCHERICHIA coli ,GENETICS of bacterial diversity ,VIRULENCE of Escherichia coli - Abstract
Adherent-invasive Escherichia coli (AIEC) strains are genetically variable and virulence factors for AIEC are non-specific. FimH is the most studied pathogenicity-related protein, and there have been few studies on other proteins, such as Serine Protease Autotransporters of Enterobacteriacea (SPATEs). The goal of this study is to characterize E. coli strains isolated from patients with Crohn's disease (CD) in Chile and Spain, and identify genetic differences between strains associated with virulence markers and clonality. We characterized virulence factors and genetic variability by pulse field electrophoresis (PFGE) in 50 E. coli strains isolated from Chilean and Spanish patients with CD, and also determined which of these strains presented an AIEC phenotype. Twenty-six E. coli strains from control patients were also included. PFGE patterns were heterogeneous and we also observed a highly diverse profile of virulence genes among all E. coli strains obtained from patients with CD, including those strains defined as AIEC. Two iron transporter genes chuA, and irp2, were detected in various combinations in 68-84%of CD strains.We found that themost significant individual E. coli geneticmarker associatedwith CD E. coli strains was chuA. In addition, patho-adaptative fimHmutations were absent in some of the highly adherent and invasive strains. The fimH adhesin, the iron transporter irp2, and Class-2 SPATEs did not show a significant association with CD strains. The V27A fimH mutation was detected in the most CD strains. This study highlights the genetic variability of E. coli CD strains from two distinct geographic origins, most of them affiliated with the B2 or D E. coli phylogroups and also reveals that nearly 40% of Chilean and Spanish CD patients are colonized with E.coli with a characteristic AIEC phenotype. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
21. Predicting the Metagenomics Content with Multiple CART Trees.
- Author
-
Travisany, Dante, Galarce, Diego, Maass, Alejandro, and Assar, Rodrigo
- Published
- 2015
- Full Text
- View/download PDF
22. Modeling Cell Decisions in Bone Formation.
- Author
-
Assar, Rodrigo, Maass, Alejandro, Fernández, Joaquín, Kofman, Ernesto, and Montecino, Martín A.
- Published
- 2015
- Full Text
- View/download PDF
23. Reconciling Competing Models: A Case Study of Wine Fermentation Kinetics.
- Author
-
Assar, Rodrigo, Vargas, Felipe A., and Sherman, David J.
- Published
- 2012
- Full Text
- View/download PDF
24. Genome-wide identification of new Wnt/β-catenin target genes in the human genome using CART method.
- Author
-
Hödar, Christian, Assar, Rodrigo, Colombres, Marcela, Aravena, Andrés, Pavez, Leonardo, González, Mauricio, Martínez, Servet, Inestrosa, Nibaldo C., and Maass, Alejandro
- Subjects
HUMAN genome ,PROMOTERS (Genetics) ,ALGORITHMS ,GENETIC regulation ,NON-coding RNA - Abstract
Background: The importance of in silico predictions for understanding cellular processes is now widely accepted, and a variety of algorithms useful for studying different biological features have been designed. In particular, the prediction of cis regulatory modules in non-coding human genome regions represents a major challenge for understanding gene regulation in several diseases. Recently, studies of the Wnt signaling pathway revealed a connection with neurodegenerative diseases such as Alzheimer's. In this article, we construct a classification tool that uses the transcription factor binding site motifs composition of some gene promoters to identify new Wnt/β-catenin pathway target genes potentially involved in brain diseases. Results: In this study, we propose 89 new Wnt/β-catenin pathway target genes predicted in silico by using a method based on multiple Classification and Regression Tree (CART) analysis. We used as decision variables the presence of transcription factor binding site motifs in the upstream region of each gene. This prediction was validated by RT-qPCR in a sample of 9 genes. As expected, LEF1, a member of the T-cell factor/lymphoid enhancer-binding factor family (TCF/LEF1), was relevant for the classification algorithm and, remarkably, other factors related directly or indirectly to the inflammatory response and amyloidogenic processes also appeared to be relevant for the classification. Among the 89 new Wnt/β-catenin pathway targets, we found a group expressed in brain tissue that could be involved in diverse responses to neurodegenerative diseases, like Alzheimer's disease (AD). These genes represent new candidates to protect cells against amyloid β toxicity, in agreement with the proposed neuroprotective role of the Wnt signaling pathway. Conclusions: Our multiple CART strategy proved to be an effective tool to identify new Wnt/β-catenin pathway targets based on the study of their regulatory regions in the human genome. In particular, several of these genes represent a new group of transcriptional dependent targets of the canonical Wnt pathway. The functions of these genes indicate that they are involved in pathophysiology related to Alzheimer's disease or other brain disorders. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
25. Calcium/calmodulin-dependent protein kinase type IV is a target gene of the Wnt/β-catenin signaling pathway.
- Author
-
ARRÁZOLA, MACARENA S., VARELA-NALLAR, LORENA, COLOMBRES, MARCELA, TOLEDO, ENRIQUE M., CRUZAT, FERNANDO, PAVEZ, LEONARDO, ASSAR, RODRIGO, ARAVENA, ANDRÉS, GONZÁLEZ, MAURICIO, MONTECINO, MARTÍN, MAASS, ALEJANDRO, MARTÍNEZ, SERVET, and INESTROSA, NIBALDO C.
- Subjects
CALCIUM ,CALMODULIN ,PROTEIN kinases ,GENE expression ,ALZHEIMER'S disease - Abstract
Calcium/calmodulin-dependent protein kinase IV (CaMKIV) plays a key role in the regulation of calcium-dependent gene expression. The expression of CaMKIV and the activation of CREB regulated genes are involved in memory and neuronal survival. We report here that: (a) a bioinformatic analysis of 15,476 promoters of the human genome predicted several Wnt target genes, being CaMKIV a very interesting candidate; (b) CaMKIV promoter contains TCF/LEF transcription motifs similar to those present in Wnt target genes; (c) biochemical studies indicate that lithium and the canonical ligand Wnt-3a induce CaMKIV mRNA and protein expression levels in rat hippocampal neurons as well as CaMKIV promoter activity; (d) treatment of hippocampal neurons with Wnt-3a increases the binding of β-catenin to the CaMKIV promoter: (e) In vivo activation of the Wnt signaling improve spatial memory impairment and restores the expression of CaMKIV in a mice double transgenic model for Alzheimer's disease which shows decreased levels of the kinase. We conclude that CaMKIV is regulated by the Wnt signaling pathway and that its expression could play a role in the neuroprotective function of the Wnt signaling against the Alzheimer's amyloid peptide. J. Cell. Physiol. 221: 658–667, 2009. © 2009 Wiley-Liss, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2009
26. P2‐587: STUDY PROTOCOL FOR THE GERO COHORT OF COGNITIVE COMPLAINT/MILD COGNITIVE IMPAIRMENT, CHILE, 2017–2019.
- Author
-
Slachevsky, Andrea, Martínez-Pernía, David, Forno, Gonzalo, Zitko, Pedro, Parrao, Teresa, Assar, Rodrigo, Galvez, Rodrigo, Haag, Paulina, Navarro, Jazmin, Orellana, Paulina, Duran-Aniotz, Claudia, Wenk, Elizabeth, Villagra, Roque, Lillo, Patricia, Gonzalez, Christian, and Thumala, Daniela
- Published
- 2018
- Full Text
- View/download PDF
27. Modeling and simulation of hybrid systems and cell factory applications
- Author
-
Assar, Rodrigo, Sherman, David James, Griffault, Alain, Couvreur, Jean-Michel, Martínez, Servet, Models and Algorithms for the Genome ( MAGNOME), Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Université Sciences et Technologies - Bordeaux I, David J. Sherman(david.sherman@inria.fr), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Inria Bordeaux - Sud-Ouest, and Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)
- Subjects
Réconciliation et reutilisation des modèles ,Formation de tissu d'os ,Biological systems ,BioRica ,reusing and reconciling models ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,hybrid systems ,wine fermentation kinetics ,[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation ,Systèmes hybrides ,[SPI.AUTO]Engineering Sciences [physics]/Automatic ,Systèmes biologiques ,bone formation ,[MATH]Mathematics [math] ,Dynamique de la fermentation du vin ,Composition - Abstract
The main aim of this thesis is to develop an approach that allows us to describe biological systems with theoretical sustenance and good results in practice. Biological functions are the result of the interaction of many processes, that connect different hierarchy levels going from macroscopic to microscopic level. Each process works in different way, with its own goal, complexity and hierarchy level. In addition, it is common to observe that changes in the conditions, such as nutrients or environment, modify the behavior of the systems. So, to describe the behavior of a biological system over time, it is convenient to combine different types of models: continuous models for gradual changes, discrete models for instantaneous changes, deterministic models for completely predictable behaviors, and stochastic or non- deterministic models to describe behaviors with imprecise or incomplete information. In this thesis we use the theory of Composition and Hybrid Systems as basis, and the BioRica framework as tool to model biological systems and analyze their emergent properties in silico. With respect to Hybrid Systems, we considered continuous models given by sets of differential equations or more general dynamics. We used Stochastic Transition Systems to describe the dynamics of model changes, allowing coe fficient switches that control the parameters of the continuous model, and strong switches that choose different models. Composition, reconciliation and reusing of models allow us to build complete and consistent descriptions of complex biological systems by combining them. Compositions of hybrid systems are hybrid systems, and the re nement of a model forming part of a composed system results in a re nement of the composed system. To implement our approach ideas we complemented the theory of our approach with the improving of the BioRica framework. We contributed to do that giving a BioRica speci cation of Hybrid Systems that assures integrity of models, allowing composition, reconciliation, and reuse of models with SBML speci cation. We applied our approach to describe two systems: wine fermentation kinetics, and cell fate decisions leading to bone and fat formation. In the case of wine fermentation, we reused known models that describe the responses of yeasts cells to different temperatures, quantities of resources and toxins, and we reconciled these models choosing the model with best adjustment to experimental data depending on the initial conditions and fermentation variable. The resulting model can be applied to avoid process problems as stuck and sluggish fermentations. With respect to cell fate decisions the idea is very ambitious. By using accurate models to predict the bone and fat formation in response to activation of pathways such as the Wnt pathway, and changes of conditions affecting these functions such as increments in Homocysteine, one can analyze the responses to treatments for osteoporosis and other bone mass disorders. We think that here we are giving a first step to obtain in silico evaluations of medical treatments before testing them in vivo or in vitro.; Les Fonctions biologiques sont le résultat de l'interaction de beaucoup de processus, avec differents objectives, complexités, niveaux d'hiérarchie, et changements de conditions que modi ent le comportement de systèmes. Nous utilisons des équations diferenciales ou dynamiques plus générales, et Stochastic Systèmes de Transition pour décrire la dynamique de changements des modèles. La composition, réconciliation et reutilisation des modèles nous permettent d'obtenir des descriptions de systèmes biologiques complètes et compatibles et leur combiner. Notre spéci cation de Systèmes Hybrides avec BioRica assures l'intégrité de modèles, et implement notre approche. Nous appliquons notre approche pour décrire in-silico deux systèmes: la dynamique de la fermentation du vin, et des décisions cellulaires associées à la formation de tissu d'os.
28. Finding new breast cancer bio-markers to improve classification and therapeutic targets: application in Chilean women.
- Author
-
Valenzuela, Luis and Assar, Rodrigo
- Subjects
- *
BREAST cancer diagnosis , *TUMOR markers , *TUMOR classification , *GENETIC regulation , *BREAST cancer treatment , *MENOPAUSE - Published
- 2015
- Full Text
- View/download PDF
29. Hierarchical study of Guyton Circulatory Model
- Author
-
Rodrigo Assar, Hayssam Soueidan, David James Sherman, Laboratoire Bordelais de Recherche en Informatique (LaBRI), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB), Models and Algorithms for the Genome ( MAGNOME), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Eric Rivals, Irena Rusu, Université de Bordeaux (UB)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Centre National de la Recherche Scientifique (CNRS), Inria Bordeaux - Sud-Ouest, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), and Assar, Rodrigo
- Subjects
[SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,[INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM] - Abstract
National audience; This article presents an initial study of the Guyton Circulatory Model using BioRica. This model consists of 18 connected modules, each of which caracterise a separate physiological subsystem. We have focused the present analysis in the Renin- Angiotensin-Aldosterone System (RAAS). The use of BioRica allowed us to build an hierarchical model for this system by means of directly mapping modules to BioRica nodes. The results of each node were validated by comparison with published results.
- Published
- 2009
30. Pulmonary embolism risk factors for intensive care unit anticoagulated COVID-19 patients undergoing computed tomography angiography.
- Author
-
Briceño-Mayorga GP, Gutiérrez R, Sotomayor C, Ebner M, Allende F, and Assar R
- Subjects
- Adolescent, Adult, Aged, Anticoagulants adverse effects, Computed Tomography Angiography, Humans, Intensive Care Units, Male, Middle Aged, Retrospective Studies, Risk Factors, SARS-CoV-2, COVID-19, Pulmonary Embolism diagnostic imaging, Pulmonary Embolism epidemiology, Venous Thromboembolism epidemiology
- Abstract
Objective: To assess pulmonary embolism incidence, its relationship with D-dimer levels and other possible associated factors in addition to anticoagulation and contrast medium adverse effects., Methods: A retrospective observational cohort study at a Chilean public hospital was performed. Intensive care unit mechanically ventilated COVID-19 patients older than 18 years old between March and June 2020 were included. All patients received heparin thromboprophylaxis, which was increased to the anticoagulation dose with D-dimer greater than 3µg/mL., Results: A total of 127 patients were followed up, of whom 73 underwent pulmonary computed tomography angiography (mean age, 54 ± 12 years; 49 men). Sixty-two of the 73 patients (84.9%) received full anticoagulation before computed tomography angiography. In addition, 18 of the 73 patients had pulmonary embolism (24.7%). When comparing patients with and without pulmonary embolism, no significant differences were observed in age, sex, obesity, smoking, Wells and revised Geneva scores, D-dimer or mortality. Anticoagulant use was similar in both groups. Days from the start of anticoagulation until computed tomography angiography were significantly lower in the pulmonary embolism group (p = 0.002). Three patients presented post contrast-acute kidney injury (4.1%), and one patient had major bleeding., Conclusion: Despite anticoagulation, one in four COVID-19 patients connected to mechanical ventilation and evaluated with pulmonary computed tomography angiography had pulmonary embolism. With a longer the delay in performing computed tomography angiography once empirical anticoagulation was started, significantly less pulmonary embolism was identified.
- Published
- 2021
- Full Text
- View/download PDF
31. Aging and Health Policies in Chile: New Agendas for Research.
- Author
-
Thumala D, Kennedy BK, Calvo E, Gonzalez-Billault C, Zitko P, Lillo P, Villagra R, Ibáñez A, Assar R, Andrade M, and Slachevsky A
- Abstract
Abstract-Population aging is among the most important global transformations. Compared to European and North American countries, Chile is among the countries with the fastest growth of life expectancy at birth during recent decades. The aging of Chile's population is related to the improvement of living conditions, but also entails risks that tend to be associated with a rapid economic growth accompanied by large income inequalities and a chronic deficit of basic social benefits. The rapid demographic transition towards an aged population has unfolded in a context of poor development of public policies to tackle the opportunities and needs associated with an aging society. This article provides a brief overview of current Chilean public policy on aging, with a focus on healthy aging as defined by World Health Organization. The discussion addresses core challenges to successfully achieve healthy aging in Chile.
- Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.