50 results on '"Agan B"'
Search Results
2. Refractive surgery in the HIV-positive U.S. Military Natural History Study Cohort: complications and risk factors
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Cammarata, S., Kirkland, N., Maves, R., Utz, G., Price, M., Powers, J., Tramont, E., Agan, B., Chu, X., Horton, W., Hsieh, H., Noiman, A., Parmelee, E., Tribble, D., Wang, X., Won, S., Barahona, I., Blaylock, J., Decker, C., Ganesan, A., Ressner, R., Wallace, D., Peel, S., De Leon, S., Merritt, S., Merritt, T., Okulicz, J., Sjoberg, T., Banks, S., Kronmann, K., Lalani, T., Tant, R., Warkentien, T., Baker, C., Chambers, S., Colombo, R., Ferguson, T., Kunz, A., Schofield, C., Stein, M., Tisdale, Carter S., Justin, Grant A., Wang, Xun, Chu, Xiuping, Carlton, Darrel K., Okulicz, Jason F., Schofield, Christina, Maves, Ryan C., Agan, Brian K., and Legault, Gary L.
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- 2019
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3. Acute Respiratory Infection Incidence and Outpatient Antibiotic Prescription Patterns in People With or Without Human Immunodeficiency Virus Infection: A Virtual Cohort Study.
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Sweet, L, Daniels, C, Xu, X, Sunil, T, Topal, S, Chu, X, Noiman, A, Barsoumian, A, Ganesan, A, Agan, B K, and Okulicz, J F
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HIV infections ,RESPIRATORY infections ,INAPPROPRIATE prescribing (Medicine) ,HIV ,VIRAL load - Abstract
Background Inappropriate antibiotic use in acute respiratory infections (ARIs) is a major public health concern; however, data for people with human immunodeficiency virus (PWH) are limited. Methods The HIV Virtual Cohort Study is a retrospective cohort of adult Department of Defense beneficiaries. Male PWH cases (n = 2413) were matched 1:2 to controls without HIV (n = 4826) by age, gender, race/ethnicity, and beneficiary status. Acute respiratory infection encounters between 2016 and 2020 and corresponding antibiotic prescriptions were characterized as always, sometimes, or never appropriate based on International Classification of Diseases, Tenth Revision coding. Incidence of ARI encounters and antibiotic appropriateness were compared between PWH and controls. Subgroup analyses were assessed by CD4 count and viral load suppression on antiretroviral therapy. Results Mean rates of ARI encounters were similar for PWH (1066 per 1000 person-years) and controls (1010 per 1000 person-years); however, the rate was double among PWH without viral load (VL) suppression (2018 per 1000 person-years). Antibiotics were prescribed in 26% of encounters among PWH compared to 34% for controls (P ≤.01); antibiotic use was "never" appropriate in 38% of encounters with PWH and 36% in controls. Compared to controls, PWH received more sulfonamides (5.5% vs 2.7%; P =.001), and variation existed among HIV subgroups in the prescription of sulfonamides, fluoroquinolones, and β-lactams. Discussion Acute respiratory infection encounters were similar for PWH and those without HIV; however, PWH with lower CD4 counts and/or nonsuppressed VL had more frequent ARI visits. Inappropriate antibiotic use for ARIs was high in both populations, and focused interventions to improve antibiotic appropriateness for prescribers caring for PWH should be pursued. [ABSTRACT FROM AUTHOR]
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- 2023
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4. HIV viraemia during hepatitis B vaccination shortens the duration of protective antibody levels
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OʼBryan, T A, Rini, E A, Okulicz, J F, Messner, O, Ganesan, A, Lalani, T, Bavaro, M F, OʼConnell, R J, Agan, B K, and Landrum, M L
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- 2015
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5. Surveillance of transcriptomes in basic military trainees with normal, febrile respiratory illness, and convalescent phenotypes
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Thach, D C, Agan, B K, Olsen, C, Diao, J, Lin, B, Gomez, J, Jesse, M, Jenkins, M, Rowley, R, Hanson, E, Tibbetts, C, Stenger, D A, and Walter, E
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- 2005
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6. Determinants of incident chronic kidney disease and progression in a cohort of HIV-infected persons with unrestricted access to health care
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Ganesan, A, Krantz, E M, Hullsiek, Huppler K, Riddle, M S, Weintrob, A C, Lalani, T, Okulicz, J F, Landrum, M, Agan, B, Whitman, T J, Ross, M J, and Crum-Cianflone, N F
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- 2013
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7. Immunoglobulin G subclass levels and antibody responses to the 2009 influenza A (H1N1) monovalent vaccine among human immunodeficiency virus (HIV)-infected and HIV-uninfected adults
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Crum-Cianflone, N. F., Collins, G., Defang, G., Iverson, E., Eberly, L. E., Duplessis, C., Maguire, J., Ganesan, A., Agan, B. K., Lalani, T., Whitman, T., Brandt, C., Faix, D., Blair, P. J., and Burgess, T.
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- 2012
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8. THE EFFECTS OF MODERATE ALTITUDE ON PRESSOR HORMONE RESPONSE: 536
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Ratliff-Marquardt, K., Clem, K. L., Trappe, S. H., Agan, B., and Troup, J. P.
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- 1992
9. HEMATOLOGICAL CHANGES AS A RESULT OP TRAINING AT MODERATE ALTITUDE AMD RETURN TO SEA-LEVEL: 534
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Agan, B., Ratliff-Marquardt, K., Clem, K. L., Trappa, T., and Troup, J. P.
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- 1992
10. On the Impact of Climate Change Policies on the Clean Technology Innovation: Evidence from Patent Data Analysis
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Balcilar Mehmet and Agan Busra
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clean and dirty innovation ,climate change ,climate change mitigation policies ,copula ,environmental policy ,nonparametric dependence test ,nonparametric quantile regression ,sustainable development ,Renewable energy sources ,TJ807-830 - Abstract
This study investigates the role of environmental policies and regulations in mitigating climate change by promoting clean innovations and discouraging dirty ones. Utilizing nonparametric copula and quantile estimation techniques, along with carefully constructed innovation variables based on patents from 2000 to 2021 across 34 countries, the research examines the effects of policy interventions and external events on energy-related innovations. Findings reveal that climate policy interventions effectively promote clean innovation, particularly at higher levels, and discourage dirty innovations. Therefore, climate change policies and regulations are crucial in achieving net-zero carbon emission targets.
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- 2023
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11. An update to the HIV-TRePS system: The development and evaluation of new global and local computational models to predict HIV treatment outcomes, with or without a genotype
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Revell, A. D., Wang, D., Wood, R., Morrow, C., Tempelman, H., Hamers, R. L., Reiss, P., van Sighem, A. I., Nelson, M., Montaner, J. S. G., Lane, H. C., Larder, B. A., Harrigan, R., de Wit, T. R., Hamers, R., Sigaloff, K., Agan, B., Marconi, V., Wegner, S., Sugiura, W., Zazzi, M., Kaiser, R., Schuelter, E., Streinu-Cercel, A., Alvarez-Uria, G., Gatell, J., Lazzari, E., Gazzard, B., Pozniak, A., Mandalia, S., Webster, D., Smith, C., Ruiz, L., Clotet, B., Staszewski, S., Torti, C., Lane, C., Metcalf, J., Perez-Elias, M. -J., Vella, S., Dettorre, G., Carr, A., Norris, R., Hesse, K., Vlahakis, E., Barth, R., Hoffmann, C., Ene, L., Dragovic, G., Diaz, R., Sucupira, C., Sued, O., Cesar, C., Madero, J. S., Emery, S., Cooper, D., Baxter, J., Monno, L., Picchio, G., Debethune, M. -P., Khabo, P., Ledwaba, L., Global Health, Infectious diseases, Amsterdam institute for Infection and Immunity, Amsterdam Public Health, and Internal medicine
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0301 basic medicine ,Microbiology (medical) ,Genotype ,Anti-HIV Agents ,030106 microbiology ,Human immunodeficiency virus (HIV) ,Antiretroviral Therapy ,HIV Infections ,Biology ,medicine.disease_cause ,Bioinformatics ,Algorithms ,Health Resources ,Humans ,Models, Statistical ,ROC Curve ,Software ,South Africa ,Treatment Outcome ,Viral Load ,Antiretroviral Therapy, Highly Active ,Computer Simulation ,03 medical and health sciences ,0302 clinical medicine ,Models ,Statistics ,medicine ,Pharmacology (medical) ,Highly Active ,030212 general & internal medicine ,Hiv treatment ,Genotyping ,Original Research ,Pharmacology ,Computational model ,Statistical ,Random forest ,Regimen ,Infectious Diseases ,Test set - Abstract
Objectives: Optimizing antiretroviral drug combination on an individual basis in resource-limited settings is challenging because of the limited availability of drugs and genotypic resistance testing. Here, we describe our latest computational models to predict treatment responses, with or without a genotype, and compare the potential utility of global and local models as a treatment tool for South Africa. Methods: Global random forest models were trained to predict the probability of virological response to therapy following virological failure using 29 574 treatment change episodes (TCEs) without a genotype, 3179 of which were from South Africa and were used to develop local models. In addition, 15 130 TCEs including genotypes were used to develop another set of models. The 'no-genotype' models were tested with an independent global test set (n = 1700) plus a subset from South Africa (n = 222). The genotype models were tested with 750 independent cases. Results: The global no-genotype models achieved area under the receiver-operating characteristic curve (AUC) values of 0.82 and 0.79 with the global and South African tests sets, respectively, and the South African models achieved AUCs of 0.70 and 0.79. The genotype models achieved an AUC of 0.84. The global no-genotype models identified more alternative, locally available regimens that were predicted to be effective for cases that failed their new regimen in the South African clinics than the local models. Both sets of models were significantly more accurate predictors of outcomes than genotyping with rules-based interpretation. Conclusions: These latest global models predict treatment responses accurately even without a genotype, out-performed the local South African models and have the potential to help optimize therapy, particularly in resource-limited settings.
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- 2016
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12. Challenges in management of Warfarin anti-coagulation in advanced HIV/AIDS patients with venous thrombotic events - A case series from a research clinic in rural Kericho, Kenya
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Tarus, N. K., Pau, A. K., Irini Sereti, Kirui, F. K., Sawe, F. K., Agan, B. K., Momanyi, L. M., Ngeno, H. C., Koskei, G. K., and Shaffer, D. N.
- Abstract
Background: Venous thrombotic events (VTE) occur at high rates in HIV/AIDS patients and are likely under-diagnosed in rural sub-Saharan Africa.Objective: To describe clinical presentations and challenges in the management of VTE in patients with advanced HIV/AIDS.Design: Case series from patients enrolled in a prospective observational cohort study.Settings: A clinical research centre in rural Kericho, Kenya.Subjects: Two hundred patients with median age 38 (30-47) years, BMI 16.9 (12.4-20.3) kg/m2, haemoglobin 9.3 (6.8-13.4) g/dL, CD4+ T-cell count 27 (4-77) cells/mm3 and plasma HIV RNA 5.23 (3.70-5.88) log10copies/mL.Interventions: VTE cases were diagnosed by clinical presentation and Doppler/ radiographic confirmation. Anti-coagulation therapy was managed by a multidisciplinary team; patients were initiated on enoxaparin or heparin followed by warfarin.Results: Over two years, 11 patients (5.5%) experienced VTE. All but one (10/11, 90.9%) case occurred within six months of starting ART. Nine patients had peripheral VTE (five popliteal, four femoral) and two had cerebral sinus thromboses. VTE was diagnosed 52 (1-469) days after ART initiation, and 81.8% of cases were outpatients at presentation. All patients received at least one concomitant medication that could significantly interact with warfarin (efavirenz, nevirapine, lopinavir/ritonavir, rifampicin, trimethoprim-sulfamethoxazole, and fluconazole). A median of 39 (10-180) days and eight (4-22) additional clinic visits were required to achieve/maintain a therapeutic INR of 2-3. Two minor bleeding complications occurred. No recurrent VTE cases were observed.Conclusion: Consideration of VTE and preparedness for management in patients with advanced HIV/AIDS starting ART is critical in sub-Saharan Africa. Overcoming challenges in anti-coagulation is possible in rural settings using a multidisciplinary team approach.
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- 2014
13. The development of an expert system to predict virological response to HIV therapy as part of an online treatment support tool
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Revell, Ad, Wang, D, Boyd, Ma, Emery, S, Pozniak, Al, De Wolf, F, Harrigan, R, Montaner, Js, Lane, C, Larder, Ba, Collaborators: De Wolf F, RDI Study G. r. o. u. p., Lange, J, Montaner, J, Agan, B, Marconi, V, Wegner, S, Sugiura, W, Zazzi, M, Gatell, J, Lazzari, E, Gazzard, B, Nelson, M, Pozniak, A, Mandalia, S, Ruiz, L, Clotet, B, Staszewski, S, Torti, Carlo, Metcalf, J, Perez Elias MJ, Carr, A, Norris, R, Hesse, K, Vlahakis, E, Fist, E, Cooper, D, Torti, C, Baxter, J, Monno, L, Picchio, G, de Bethune MP, and Perez Elias, M. J.
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- 2011
14. Skin and soft tissue infections among HIV-infected persons in the late combination antiretroviral therapy era.
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Crum-Cianflone, N. F., Grandits, G., Weintrob, A., Ganesan, A., Agan, B., and Landrum, M.
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HIV-positive persons ,SKIN infections ,SOFT tissue infections ,THERAPEUTICS ,HIV infections ,HIGHLY active antiretroviral therapy - Abstract
Skin and soft tissue infections (SSTIs) occur at higher rates among HIV-infected persons, but current trends and risk factors are largely undefined. We evaluated SSTIs among a prospective cohort of HIV-infected persons during the late combination antiretroviral therapy (cART) era (2006-2010). Of the 1918 HIV-infected persons evaluated, 379 (20%) developed an SSTI during a median of 3.7 years of follow-up; of these, 118 (31%) developed at least one recurrent SSTI. The incidence rate of SSTIs was 101 (95% confidence interval [CI] 93-109) cases per 1000 person-years, and rates did not significantly change during the study period. Compared with not receiving cART and having an HIV RNA level .1000 copies/mL, patients receiving cART with an HIV RNA level >1000 copies/mL had a reduced risk of an SSTI (hazard ratio 0.64, 95% CI 0.48-0.86, P< 0.01). In summary, initial and recurrent SSTIs are common among HIV-infected persons, and HIV control is associated with a lower risk of SSTIs. [ABSTRACT FROM AUTHOR]
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- 2012
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15. Herpes simplex virus type 2 and HIV infection among USmilitary personnel: implications for health prevention programmes.
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Bautista, C. T., Singer, D. E., O'Connell, R. J., Crum-Cianflone, N., Agan, B. K., Malia, J. A., Sanchez, J. L., Peel, S. A., Michael, N. L., and Scott, P. T.
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HERPES simplex virus ,AMERICAN military personnel ,HIV infections ,AIDS patients - Abstract
US military personnel are routinely screened for HIV infection. Herpes simplex virus type 2 (HSV-2) is a risk factor for HIV acquisition. To determine the association between HSV-2 and HIV, a matched case-control study was conducted among US Army and Air Force servicemembers with incident HIV infections (cases) randomly matched with two HIV-uninfected servicemembers (controls) between 2000 and 2004. HSV-2 prevalence was significantly higher among cases (30.3%, 138/456) than among controls (9.7%, 88/912, P < 0.001). HSV-2 was strongly associated with HIV in univariate (odds ratio [OR] = 4.2, 95% confidence interval [CI] = 3.1-5.8) and multiple analyses (adjusted [OR] = 3.9, 95% CI = 2.8-5.6). The population attributable risk percentage of HIV infection due to HSV-2 was 23%. Identifying HSV-2 infections may afford the opportunity to provide targeted behavioural interventions that could decrease the incidence of HIV infections in the US military population; further studies are needed. [ABSTRACT FROM AUTHOR]
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- 2009
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16. Syphilis co-infection does not affect HIV disease progression.
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Weintrob, A. C., Gu, W., Qin, J., Robertson, J., Ganeson, A., Crum-Cianflone, N. F., Landrum, M. L., Wortmann, G. W., Follman, D., and Agan, B. K.
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DISEASE progression ,HIV infection complications ,SYPHILIS ,INFECTIOUS disease transmission ,VIRAL load ,SEROCONVERSION ,MULTIVARIATE analysis ,HIGHLY active antiretroviral therapy ,DISEASE risk factors - Abstract
HIV and syphilis are often seen as co-infections since they share a common mode of transmission. During episodes of syphilis, CD4 counts transiently decrease and HIV viral loads increase; however, the effect of syphilis co-infection on HIV disease progression (time to AIDS or death) is unclear. We analysed prospectively collected information on 2239 persons with estimated dates of HIV seroconversion (205 [9.2%] with confirmed syphilis and 66 [2.9%] with probable syphilis) in order to determine the effect of syphilis co-infection on HIV disease progression. In multivariate models censored at highly active antiretroviral therapy (HAART) initiation or last visit, adjusting for CD4 count, age, race, gender, and hepatitis B and C status, syphilis (confirmed + probable) was not associated with increased hazard of AIDS or death (hazard ratio 0.99, 95% CI 0.73-1.33). Treating HAART as a time-varying covariate or limiting the analysis to only confirmed syphilis cases did not significantly alter the results. Despite transient changes in CD4 counts and viral loads, syphilis does not appear to affect HIV disease progression. [ABSTRACT FROM AUTHOR]
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- 2010
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17. Clinical, demographic and laboratory parameters at HAART initiation associated with decreased post-HAART survival in a U.S. military prospective HIV cohort
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Lifson Alan R, Krantz Elizabeth M, Grambsch Patricia L, Macalino Grace E, Crum-Cianflone Nancy F, Ganesan Anuradha, Okulicz Jason F, Eaton Anne, Powers John H, Eberly Lynn E, and Agan Brian K
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Highly active antiretroviral therapy ,mortality ,CD4+ lymphocyte count ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background Although highly active antiretroviral therapy (HAART) has improved HIV survival, some patients receiving therapy are still dying. This analysis was conducted to identify factors associated with increased risk of post-HAART mortality. Methods We evaluated baseline (prior to HAART initiation) clinical, demographic and laboratory factors (including CD4+ count and HIV RNA level) for associations with subsequent mortality in 1,600 patients who began HAART in a prospective observational cohort of HIV-infected U.S. military personnel. Results Cumulative mortality was 5%, 10% and 18% at 4, 8 and 12 years post-HAART. Mortality was highest (6.23 deaths/100 person-years [PY]) in those with ≤ 50 CD4+ cells/mm3 before HAART initiation, and became progressively lower as CD4+ counts increased (0.70/100 PY with ≥ 500 CD4+ cells/mm3). In multivariate analysis, factors significantly (p < 0.05) associated with post-HAART mortality included: increasing age among those ≥ 40 years (Hazard ratio [HR] = 1.32 per 5 year increase), clinical AIDS events before HAART (HR = 1.93), ≤ 50 CD4+ cells/mm3 (vs. CD4+ ≥ 500, HR = 2.97), greater HIV RNA level (HR = 1.36 per one log10 increase), hepatitis C antibody or chronic hepatitis B (HR = 1.96), and HIV diagnosis before 1996 (HR = 2.44). Baseline CD4+ = 51-200 cells (HR = 1.74, p = 0.06), and hemoglobin < 12 gm/dL for women or < 13.5 for men (HR = 1.36, p = 0.07) were borderline significant. Conclusions Although treatment has improved HIV survival, defining those at greatest risk for death after HAART initiation, including demographic, clinical and laboratory correlates of poorer prognoses, can help identify a subset of patients for whom more intensive monitoring, counseling, and care interventions may improve clinical outcomes and post-HAART survival.
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- 2012
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18. Long-term CD4+ lymphocyte response following HAART initiation in a U.S. Military prospective cohort
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Marconi Vincent C, Dolan Matthew J, Eberly Lynn E, Krantz Elizabeth M, Lifson Alan R, Weintrob Amy C, Crum-Cianflone Nancy F, Ganesan Anuradha, Grambsch Patricia L, and Agan Brian K
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Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background Among HIV-infected persons initiating highly active antiretroviral therapy (HAART), early CD4+ lymphocyte count increases are well described. However, whether CD4+ levels continue to increase or plateau after 4-6 years is controversial. Methods To address this question and identify other determinants of CD4+ response, we analyzed data for 1,846 persons from a prospective HIV military cohort study who initiated HAART, who had post-HAART CD4+ measurements, and for whom HIV seroconversion (SC) date was estimated. Results CD4+ count at HAART initiation was ≤ 200 cells/mm3 for 23%, 201-349 for 31%, 350-499 for 27%, and ≥500 for 19%. The first 6 months post-HAART, the greatest CD4+ increases (93-151 cells) occurred, with lesser increases (22-36 cells/year) through the first four years. Although CD4+ changes for the entire cohort were relatively flat thereafter, HIV viral load (VL) suppressors showed continued increases of 12-16 cells/year. In multivariate analysis adjusting for baseline CD4+ and post-HAART time interval, CD4+ responses were poorer in those with: longer time from HIV SC to HAART start, lower pre-HAART CD4+ nadir, higher pre-HAART VL, and clinical AIDS before HAART (P < 0.05). Conclusions Small but positive long-term increases in CD4+ count in virally suppressed patients were observed. CD4+ response to HAART is influenced by multiple factors including duration of preceding HIV infection, and optimized if treatment is started with virally suppressive therapy as early as possible.
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- 2011
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19. Outcomes of highly active antiretroviral therapy in the context of universal access to healthcare: the U.S. Military HIV Natural History Study
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Ganesan Anuradha, Landrum Michael L, Chun Helen, Weintrob Amy C, Grandits Greg A, Marconi Vincent C, Okulicz Jason F, Crum-Cianflone Nancy, O'Connell Robert J, Lifson Alan, Wortmann Glenn W, and Agan Brian K
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Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background To examine the outcomes of highly-active antiretroviral therapy (HAART) for individuals with free access to healthcare, we evaluated 2327 patients in a cohort study composed of military personnel and beneficiaries with HIV infection who initiated HAART from 1996 to the end of 2007. Methods Outcomes analyzed were virologic suppression (VS) and failure (VF), CD4 count changes, AIDS and death. VF was defined as never suppressing or having at least one rebound event. Multivariate (MV) analyses stratified by the HAART initiation year (before or after 2000) were performed to identify risk factors associated with these outcomes. Results Among patients who started HAART after 2000, 81% had VS at 1 year (N = 1,759), 85% at 5 years (N = 1,061), and 82% at 8 years (N = 735). Five years post-HAART, the median CD4 increase was 247 cells/ml and 34% experienced VF. AIDS and mortality rates at 5 years were 2% and 0.3%, respectively. In a MV model adjusted for known risk factors associated with treatment response, being on active duty (versus retired) at HAART initiation was associated with a decreased risk of AIDS (HR = 0.6, 95% CI 0.4-1.0) and mortality (0.6, 0.3-0.9), an increased probability of CD4 increase ≥ 50% (1.2, 1.0-1.4), but was not significant for VF. Conclusions In this observational cohort, VS rates approach those described in clinical trials. Initiating HAART on active duty was associated with even better outcomes. These findings support the notion that free access to healthcare likely improves the response to HAART thereby reducing HIV-related morbidity and mortality.
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- 2010
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20. Lethal COVID-19 associates with RAAS-induced inflammation for multiple organ damage including mediastinal lymph nodes.
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Topper MJ, Guarnieri JW, Haltom JA, Chadburn A, Cope H, Frere J, An J, Borczuk A, Sinha S, Kim J, Park J, Butler D, Meydan C, Foox J, Bram Y, Richard SA, Epsi NJ, Agan B, Chenoweth JG, Simons MP, Tribble D, Burgess T, Dalgard C, Heise MT, Moorman NJ, Baxter VK, Madden EA, Taft-Benz SA, Anderson EJ, Sanders WA, Dickmander RJ, Beigel K, Widjaja GA, Janssen KA, Lie T, Murdock DG, Angelin A, Soto Albrecht YE, Olali AZ, Cen Z, Dybas J, Priebe W, Emmett MR, Best SM, Kelsey Johnson M, Trovao NS, Clark KB, Zaksas V, Meller R, Grabham P, Schisler JC, Moraes-Vieira PM, Pollett S, Mason CE, Syrkin Wurtele E, Taylor D, Schwartz RE, Beheshti A, Wallace DC, and Baylin SB
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- Humans, Animals, Inflammation pathology, Cytokine Release Syndrome pathology, Mediastinum pathology, Male, Mice, COVID-19 pathology, COVID-19 immunology, COVID-19 virology, COVID-19 metabolism, Renin-Angiotensin System, Lymph Nodes pathology, Lymph Nodes metabolism, SARS-CoV-2
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Lethal COVID-19 outcomes are attributed to classic cytokine storm. We revisit this using RNA sequencing of nasopharyngeal and 40 autopsy samples from patients dying of SARS-CoV-2. Subsets of the 100 top-upregulated genes in nasal swabs are upregulated in the heart, lung, kidney, and liver, but not mediastinal lymph nodes. Twenty-two of these are "noncanonical" immune genes, which we link to components of the renin-angiotensin-activation-system that manifest as increased fibrin deposition, leaky vessels, thrombotic tendency, PANoptosis, and mitochondrial dysfunction. Immunohistochemistry of mediastinal lymph nodes reveals altered architecture, excess collagen deposition, and pathogenic fibroblast infiltration. Many of the above findings are paralleled in animal models of SARS-CoV-2 infection and human peripheral blood mononuclear and whole blood samples from individuals with early and later SARS-CoV-2 variants. We then redefine cytokine storm in lethal COVID-19 as driven by upstream immune gene and mitochondrial signaling producing downstream RAAS (renin-angiotensin-aldosterone system) overactivation and organ damage, including compromised mediastinal lymph node function., Competing Interests: Competing interests statement:R.E.S. is on the scientific advisory of Miromatrix, Inc. and Lime Therapeutics and is a consultant for Alnylam, Inc. D.C.W. is on the scientific advisory boards of Pano Therapeutics, Inc., and Medical Excellent Capital.
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- 2024
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21. Human and hamster sera correlate well in identifying antigenic drift among SARS-CoV-2 variants, including JN.1.
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Wang W, Bhushan G, Paz S, Stauft CB, Selvaraj P, Goguet E, Bishop-Lilly KA, Subramanian R, Vassell R, Lusvarghi S, Cong Y, Agan B, Richard SA, Epsi NJ, Fries A, Fung CK, Conte MA, Holbrook MR, Wang TT, Burgess TH, Pollett SD, Mitre E, Katzelnick LC, and Weiss CD
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- Animals, Humans, Cricetinae, COVID-19 Vaccines immunology, Antigenic Drift and Shift immunology, Spike Glycoprotein, Coronavirus immunology, Spike Glycoprotein, Coronavirus genetics, Neutralization Tests, SARS-CoV-2 immunology, SARS-CoV-2 genetics, COVID-19 immunology, COVID-19 virology, Antibodies, Viral blood, Antibodies, Viral immunology, Antibodies, Neutralizing blood, Antibodies, Neutralizing immunology, Antigens, Viral immunology, Antigens, Viral genetics
- Abstract
Antigenic assessments of SARS-CoV-2 variants inform decisions to update COVID-19 vaccines. Primary infection sera are often used for assessments, but such sera are rare due to population immunity from SARS-CoV-2 infections and COVID-19 vaccinations. Here, we show that neutralization titers and breadth of matched human and hamster pre-Omicron variant primary infection sera correlate well and generate similar antigenic maps. The hamster antigenic map shows modest antigenic drift among XBB sub-lineage variants, with JN.1 and BA.4/BA.5 variants within the XBB cluster, but with fivefold to sixfold antigenic differences between these variants and XBB.1.5. Compared to sera following only ancestral or bivalent COVID-19 vaccinations, or with post-vaccination infections, XBB.1.5 booster sera had the broadest neutralization against XBB sub-lineage variants, although a fivefold titer difference was still observed between JN.1 and XBB.1.5 variants. These findings suggest that antibody coverage of antigenically divergent JN.1 could be improved with a matched vaccine antigen.IMPORTANCEUpdates to COVID-19 vaccine antigens depend on assessing how much vaccine antigens differ antigenically from newer SARS-CoV-2 variants. Human sera from single variant infections are ideal for discriminating antigenic differences among variants, but such primary infection sera are now rare due to high population immunity. It remains unclear whether sera from experimentally infected animals could substitute for human sera for antigenic assessments. This report shows that neutralization titers of variant-matched human and hamster primary infection sera correlate well and recognize variants similarly, indicating that hamster sera can be a proxy for human sera for antigenic assessments. We further show that human sera following an XBB.1.5 booster vaccine broadly neutralized XBB sub-lineage variants but titers were fivefold lower against the more recent JN.1 variant. These findings support updating the current COVID-19 vaccine variant composition and developing a framework for assessing antigenic differences in future variants using hamster primary infection sera., Competing Interests: The authors declare no conflict of interest.
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- 2024
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22. Guest editorial: health policy analysis on improving HIV PrEP implementation to help end the HIV epidemic in the U.S. military.
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Mancuso JD, Blaylock J, Robinson S, and Agan B
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- Humans, United States epidemiology, Anti-HIV Agents therapeutic use, Policy Making, Epidemics prevention & control, Centers for Disease Control and Prevention, U.S. organization & administration, Male, HIV Infections prevention & control, HIV Infections epidemiology, Pre-Exposure Prophylaxis methods, Military Personnel statistics & numerical data, Health Policy
- Abstract
Use of HIV pre-exposure prophylaxis (PrEP) among U.S. military service members at high risk for HIV infection remains suboptimal, resulting in preventable new HIV infections and decreased medical readiness among service members. PrEP coverage should be increased to the greatest extent possible to prevent HIV infection and support the Military Health System (MHS) quadruple aim. This policy analysis employed the Centers for Disease Control and Prevention (CDC)'s Policy Analytical Framework to develop several policy options based upon the evidence summary and interventions described. Evaluation criteria based on the CDC's Policy Analytical Framework incorporated all elements of the Military Health System (MHS)'s quadruple aim, including impact on population health and readiness, impact on the experience of care, and value in terms of cost-effectiveness. An additional criterion of feasibility was also added to account for cultural, societal, and political factors influencing this policy decision. This policy analysis suggests that HIV PrEP coverage in the MHS remains suboptimal, while several available interventions could result in substantial increases in PrEP coverage that would, in turn, result in further reductions in new service member HIV infections and increased medical readiness.
- Published
- 2024
23. Sustainable development through green transition in EU countries: New evidence from panel quantile regression.
- Author
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Agan B
- Subjects
- Economic Development, Urbanization, European Union, Sustainable Development, Carbon Dioxide analysis
- Abstract
Sustainable development addresses global challenges by promoting practices that balance economic, social, and environmental considerations. Key factors include the shifting to green energy and the integrating of green technology in the sustainable development process. This study investigates the heterogenous effects of green technology development, green energy, R&D expenditures, FDI, economic growth, and urbanization on CO
2 emissions in 25 European Union (EU) countries using panel quantile regression over the period 2000-2021. The results, based on panel quantile regression, indicate that green energy decreases CO2 emissions from the 10th to the 90th quantiles, while green technology development increases CO2 emissions at the lower quantiles (10th to 60th) and then turns negative. The robustness of the fixed effect model also confirms the findings of the study. Additionally, panel causality tests indicate no causal link between green technology development and CO2 emissions, but there is bidirectional causality between green energy and CO2 emissions. Therefore, the findings highlight that policymakers should thoroughly evaluate measures and strategies to encourage the development of green technologies and green energy sources to reduce high levels of CO2 emissions. One strategy is to provide financial aid and support technological advances to produce green energy at reduced costs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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24. White and Gray Matter Changes are Associated With Neurocognitive Decline in HIV Infection.
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Chien A, Wu T, Lau CY, Pandya D, Wiebold A, Agan B, Snow J, Smith B, Nath A, and Nair G
- Subjects
- Humans, Cross-Sectional Studies, Adult, Middle Aged, Male, Female, Cerebrum diagnostic imaging, Cerebrum pathology, Longitudinal Studies, HIV Infections complications, HIV Infections diagnostic imaging, HIV Infections pathology, HIV Infections therapy, Neurocognitive Disorders diagnostic imaging, White Matter diagnostic imaging, White Matter pathology, Gray Matter diagnostic imaging, Gray Matter pathology
- Abstract
Objective: To investigate the relationship between neurocognitive deficits and structural changes on brain magnetic resonance imaging in people living with HIV (PLWH) with good virological control on combination antiretroviral therapy, compared with socioeconomically matched control participants recruited from the same communities., Methods: Brain magnetic resonance imaging scans, and clinical and neuropsychological data were obtained from virologically controlled PLWH (viral load of <50 c/mL and at least 1 year of combination antiretroviral therapy) and socioeconomically matched control participants. Magnetic resonance imaging was carried out on 3 T scanner with 8-channel head coils and segmented using Classification using Derivative-based Features. Multiple regression analysis was performed to examine the association between brain volume and various clinical and neuropsychiatric parameters adjusting for age, race, and sex. To evaluate longitudinal changes in brain volumes, a random coefficient model was used to evaluate the changes over time (age) adjusting for sex and race., Results: The cross-sectional study included 164 PLWH and 51 controls, and the longitudinal study included 68 PLWH and 20 controls with 2 or more visits (mean 2.2 years, range 0.8-5.1 years). Gray matter (GM) atrophy rate was significantly higher in PLWH compared with control participants, and importantly, the GM and global atrophy was associated with the various neuropsychological domain scores. Higher volume of white matter hyperintensities were associated with increased atherosclerotic cardiovascular disease risk score, and decreased executive functioning and memory domain scores in PLWH., Interpretation: These findings suggest ongoing neurological damage even in virologically controlled participants, with significant implications for clinical management of PLWH. ANN NEUROL 2024;95:941-950., (Published 2024. This article is a U.S. Government work and is in the public domain in the USA. Annals of Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
- Published
- 2024
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25. Antigenic cartography using hamster sera identifies SARS-CoV-2 JN.1 evasion seen in human XBB.1.5 booster sera.
- Author
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Wang W, Bhushan GL, Paz S, Stauft CB, Selvaraj P, Goguet E, Bishop-Lilly KA, Subramanian R, Vassell R, Lusvarghi S, Cong Y, Agan B, Richard SA, Epsi NJ, Fries A, Fung CK, Conte MA, Holbrook MR, Wang TT, Burgess TH, Mitre E, Pollett SD, Katzelnick LC, and Weiss CD
- Abstract
Antigenic assessments of SARS-CoV-2 variants inform decisions to update COVID-19 vaccines. Primary infection sera are often used for assessments, but such sera are rare due to population immunity from SARS-CoV-2 infections and COVID-19 vaccinations. Here, we show that neutralization titers and breadth of matched human and hamster pre-Omicron variant primary infection sera correlate well and generate similar antigenic maps. The hamster antigenic map shows modest antigenic drift among XBB sub-lineage variants, with JN.1 and BA.4/BA.5 variants within the XBB cluster, but with five to six-fold antigenic differences between these variants and XBB.1.5. Compared to sera following only ancestral or bivalent COVID-19 vaccinations, or with post-vaccination infections, XBB.1.5 booster sera had the broadest neutralization against XBB sub-lineage variants, although a five-fold titer difference was still observed between JN.1 and XBB.1.5 variants. These findings suggest that antibody coverage of antigenically divergent JN.1 could be improved with a matched vaccine antigen., Competing Interests: Competing interests S. D. P. and T. H. B report that the Uniformed Services University (USU) Infectious Diseases Clinical Research Program (IDCRP), a US Department of Defense institution, and the Henry M. Jackson Foundation (HJF) were funded under a Cooperative Research and Development Agreement to conduct an unrelated phase III COVID-19 monoclonal antibody immunoprophylaxis trial sponsored by AstraZeneca. The HJF, in support of the USU IDCRP, was funded by the Department of Defense Joint Program Executive Office for Chemical, Biological, Radiological, and Nuclear Defense to augment the conduct of an unrelated phase III vaccine trial sponsored by AstraZeneca. Both trials were part of the US Government COVID-19 response. Neither is related to the work presented here. The contents of this publication are the sole responsibility of the author (s) and do not necessarily reflect the views, opinions, or policies of Uniformed Services University of the Health Sciences (USUHS); the Department of Defense (DoD); the Departments of the Army, Navy, or Air Force; the Defense Health Agency; the Henry M. Jackson Foundation for the Advancement of Military Medicine Inc; the National Institutes of Health; the Department of Energy, ORISE; the US Food and Drug Administration, or the Department of Health and Human Services. Mention of trade names, commercial products, or organizations does not imply endorsement by the U.S. Government. The investigators have adhered to the policies for protection of human subjects as prescribed in 45 CFR 46. K.B-L, A.F., T.H.B, E.M., C.B.S., S.L., P.S., R.V., C.D.W, T.T.W, W.W., Y.C., M.R.H., and L.C.K. are employees of the US Government. This work was prepared as part of their official duties. Title 17 U.S.C. §105 provides that “Copyright protection under this title is not available for any work of the United States Government.” Title 17 U.S.C. §101 defines a US Government work as a work prepared by a military service member or employee of the US Government as part of that person’s official duties.
- Published
- 2024
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26. An Analysis of SARS-CoV-2 Vaccine Reactogenicity: Variation by Type, Dose, and History, Severity, and Recency of Prior SARS-CoV-2 Infection.
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Scher AI, Berjohn CM, Byrne C, Colombo RE, Colombo CJ, Edwards MS, Ewers EC, Ganesan A, Jones M, Larson DT, Libraty D, Lindholm DA, Madar CS, Maldonado CJ, Maves RC, Mende K, Richard SA, Rozman JS, Rusiecki J, Smith A, Simons M, Tribble D, Agan B, Burgess TH, and Pollett SD
- Abstract
Background: There is limited information on the functional consequences of coronavirus disease 2019 (COVID-19) vaccine side effects. To support patient counseling and public health messaging, we describe the risk and correlates of COVID-19 vaccine side effects sufficient to prevent work or usual activities and/or lead to medical care ("severe" side effects)., Methods: The EPICC study is a longitudinal cohort study of Military Healthcare System beneficiaries including active duty service members, dependents, and retirees. We studied 2789 adults who were vaccinated between December 2020 and December 2021., Results: Severe side effects were most common with the Ad26.COV2.S (Janssen/Johnson and Johnson) vaccine, followed by mRNA-1273 (Moderna) then BNT162b2 (Pfizer/BioNTech). Severe side effects were more common after the second than first dose (11% vs 4%; P < .001). First (but not second) dose side effects were more common in those with vs without prior severe acute respiratory syndrome coronavirus 2 infection (9% vs 2%; adjusted odds ratio [aOR], 5.84; 95% CI, 3.8-9.1), particularly if the prior illness was severe or critical (13% vs 2%; aOR, 10.57; 95% CI, 5.5-20.1) or resulted in inpatient care (17% vs 2%; aOR, 19.3; 95% CI, 5.1-72.5). Side effects were more common in women than men but not otherwise related to demographic factors., Conclusions: Vaccine side effects sufficient to prevent usual activities were more common after the second than first dose and varied by vaccine type. First dose side effects were more likely in those with a history of COVID-19-particularly if that prior illness was severe or associated with inpatient care. These findings may assist clinicians and patients by providing a real-world evaluation of the likelihood of experiencing impactful postvaccine symptoms., (Published by Oxford University Press on behalf of Infectious Diseases Society of America 2022.This work is written by (a) US Government employee(s) and is in the public domain in the US.)
- Published
- 2022
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27. Patients with HIV-associated cancers have evidence of increased T cell dysfunction and exhaustion prior to cancer diagnosis.
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Chaudhary O, Trotta D, Wang K, Wang X, Chu X, Bradley C, Okulicz J, Maves RC, Kronmann K, Schofield CM, Blaylock JM, Deng Y, Schalper KA, Kaech SM, Agan B, Ganesan A, and Emu B
- Subjects
- Biomarkers, Case-Control Studies, Humans, Programmed Cell Death 1 Receptor metabolism, HIV Infections complications, HIV-1 metabolism, Neoplasms diagnosis
- Abstract
Background: People living with HIV (PLWH) have increased risk of developing cancers after controlling traditional risk factors and viral suppression. This study explores whether T cells can serve as a marker of risk for cancer among HIV-infected virally suppressed patients., Methods: A nested case control study design was pursued with 17 cancer cases and 73 controls (PLWH without cancer)ouidentified among the US Military HIV Natural History Study cohort, and were matched for CD4 + count, duration of HIV infection, and viral suppression. Cells were obtained from PLWH on an average of 12 months prior to clinical cancer diagnosis. Expression of inhibitory receptors (PD-1, CD160, CD244, Lag-3, and TIGIT), and transcription factors (T-bet, Eomesodermin, TCF-1, and (TOX) was measured on CD8 +T cells from that early time point., Results: We found that cases have increased expression of PD-1 +CD160+CD244+ ('triple positive') on total and effector CD8 + compared with controls (p=0.02). Furthermore, CD8 +T cells that were both PD-1 +CD160+CD244+ and T-bet
dim Eomeshi were significantly elevated in cases at time point before cancer detection, compared with controls without cancer (p=0.008). This was driven by the finding that transcriptional factor profile of cells was altered in cancers compared with controls. Triple-positive cells were noted to retain the ability for cytotoxicity and cytokine secretion mediated by expression of CD160 and PD-1, respectively. However, triple-positive cells demonstrated high expression of TOX-1, a transcription factor associated with T cell exhaustion., Conclusion: In conclusion, we have found a subset of dysfunctional CD8 +T cells, PD-1 +CD160+CD244+T-betdim Eomeshi , that is elevated 12 months before cancer diagnosis, suggesting that peripheral T cell alterations may serve as a biomarker of increased cancer risk among PLWH., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2022. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)- Published
- 2022
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28. Effects of human immunodeficiency virus status on symptom severity in influenza-like illness in an otherwise healthy adult outpatient cohort.
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Colombo RE, Schofield C, Richard SA, Fairchok M, Chen WJ, Danaher PJ, Lalani TN, Ridoré M, Maves RC, Arnold JC, Ganesan A, Agan B, Millar EV, Coles C, and Burgess TH
- Subjects
- Adult, Antiviral Agents, Cohort Studies, Humans, Male, Outpatients, Picornaviridae Infections epidemiology, Picornaviridae Infections pathology, HIV Infections complications, Influenza, Human epidemiology, Influenza, Human pathology
- Abstract
The impact of HIV on influenza-like illness (ILI) has been incompletely described in the era of combination antiretroviral therapy, particularly in the post-H1N1 pandemic period. This analysis informs on ILI in an otherwise healthy, predominantly outpatient cohort of adults with HIV in the USA. From September 2010 to March 2015, this multisite observational cohort study enrolled otherwise healthy adults presenting to a participating US military medical center with ILI, a subset of whom were HIV positive. Demographics, clinical data, and self-reported symptom severity were ascertained, and enrollees completed a daily symptom diary for up to 10 days. 510 men were included in the analysis; 50 (9.8%) were HIV positive. Subjects with HIV were older and less likely to be on active duty. Rhinovirus and influenza A were the most commonly identified pathogens. Moderate-severe diarrhea (p<0.001) and fatigue (p=0.01) were more frequently reported by HIV-positive men. HIV positivity was associated with higher gastrointestinal scores, but not other measures of ILI symptom severity, after controlling for age, race, military status, and influenza season. Few were hospitalized. HIV-positive subjects had more influenza B (p=0.04) and were more likely to receive antivirals (32% vs 6%, p<0.01). Antiviral use was not significantly associated with symptom scores when accounting for potential confounders. In this predominantly outpatient cohort of adult men, HIV had minimal impact on ILI symptom severity. Despite similar illness severity, a higher percentage of subjects with HIV reported undergoing antiviral treatment for ILI, likely reflecting differences in prescribing practices.Trial registration number: NCT01021098., Competing Interests: Competing interests: None declared., (© American Federation for Medical Research 2021. Re-use permitted under CC BY-NC. No commercial re-use. Published by BMJ.)
- Published
- 2021
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29. Factors associated with erectile dysfunction diagnosis in men with HIV infection: a case-control study.
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Jansen N, Daniels C, Sunil T, Xu X, Cota J, Ganesan A, Agan BK, and Okulicz JF
- Subjects
- Case-Control Studies, Cohort Studies, Humans, Male, Prevalence, Retrospective Studies, Risk Factors, Erectile Dysfunction diagnosis, Erectile Dysfunction epidemiology, Erectile Dysfunction etiology, HIV Infections complications, HIV Infections epidemiology
- Abstract
Objectives: HIV infection is associated with increased risk of erectile dysfunction (ED); however, factors associated with ED remain unclear. We evaluated the prevalence of ED among men living with HIV and factors associated with ED diagnosis in the US Military HIV Natural History Study (NHS)., Methods: A retrospective cohort study evaluated participants in the NHS, a cohort of HIV-positive active duty members and beneficiaries with HIV infection. Men with a diagnosis of ED after HIV diagnosis were included. Cohort controls without ED diagnosis were matched 2:1 by age at HIV diagnosis and duration of follow-up. Multivariate logistic regression models were used to identify factors associated with ED., Results: A total of 543 of 5682 male participants (9.6% prevalence) had a diagnosis of ED, of whom 488 were included in the analysis. The median (interquartile range, IQR) age at ED diagnosis was 43 (37.0-49.0) years and the time from HIV diagnosis to antiretroviral therapy (ART) start was longer for cases (5.0 years, IQR: 2.0-9.0) than for controls (3.0 years, 1.0-6.0; P < 0.01). Cases had higher proportions of multiple comorbid conditions, including depression (33.4% vs. 21.7%), tobacco use (19.7% vs. 9.0%) and sleep apnoea (14.8% vs. 4.2%) compared with controls (P < 0.01 for all). Logistic regression showed increased odds of ED for delayed ART initiation > 4 years [odds ratio (OR) = 2.05, 95% confidence interval (CI): 1.56-2.71], protease inhibitor use ≥ 1 year (OR = 1.81, 95% CI: 1.38-2.38) and sleep apnoea (OR = 2.60, 95% CI: 1.68-4.01)., Conclusions: Erectile dysfunction was common in men with HIV and associated factors included both HIV-related and traditional factors., (© 2021 British HIV Association. This article is a U.S. Government work and is in the public domain in the USA.)
- Published
- 2021
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30. 2021 update to HIV-TRePS: a highly flexible and accurate system for the prediction of treatment response from incomplete baseline information in different healthcare settings.
- Author
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Revell AD, Wang D, Perez-Elias MJ, Wood R, Cogill D, Tempelman H, Hamers RL, Reiss P, van Sighem A, Rehm CA, Agan B, Alvarez-Uria G, Montaner JSG, Lane HC, and Larder BA
- Subjects
- Antiretroviral Therapy, Highly Active, CD4 Lymphocyte Count, Delivery of Health Care, Genotype, HIV genetics, Humans, RNA, Viral, Viral Load, Anti-HIV Agents therapeutic use, HIV Infections drug therapy
- Abstract
Objectives: With the goal of facilitating the use of HIV-TRePS to optimize therapy in settings with limited healthcare resources, we aimed to develop computational models to predict treatment responses accurately in the absence of commonly used baseline data., Methods: Twelve sets of random forest models were trained using very large, global datasets to predict either the probability of virological response (classifier models) or the absolute change in viral load in response to a new regimen (absolute models) following virological failure. Two 'standard' models were developed with all baseline variables present and 10 others developed without HIV genotype, time on therapy, CD4 count or any combination of the above., Results: The standard classifier models achieved an AUC of 0.89 in cross-validation and independent testing. Models with missing variables achieved AUC values of 0.78-0.90. The standard absolute models made predictions that correlated significantly with observed changes in viral load with a mean absolute error of 0.65 log10 copies HIV RNA/mL in cross-validation and 0.69 log10 copies HIV RNA/mL in independent testing. Models with missing variables achieved values of 0.65-0.75 log10 copies HIV RNA/mL. All models identified alternative regimens that were predicted to be effective for the vast majority of cases where the new regimen prescribed in the clinic failed. All models were significantly better predictors of treatment response than genotyping with rules-based interpretation., Conclusions: These latest models that predict treatment responses accurately, even when a number of baseline variables are not available, are a major advance with greatly enhanced potential benefit, particularly in resource-limited settings. The only obstacle to realizing this potential is the willingness of healthcare professions to use the system., (© The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2021
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31. Association between depression and HIV treatment outcomes in a US military population with HIV infection.
- Author
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Carney B, Daniels C, Xu X, Sunil T, Ganesan A, Blaylock JM, Kronmann KC, Schofield C, Lalani T, Agan B, and Okulicz JF
- Subjects
- CD4 Lymphocyte Count, Child, Depression epidemiology, Humans, Male, Medication Adherence, Treatment Outcome, Viral Load, HIV Infections complications, HIV Infections drug therapy, HIV Infections epidemiology, Military Personnel
- Abstract
Background: Depression is common among HIV-infected individuals and may contribute to suboptimal adherence to antiretroviral therapy (ART) and subsequent inability to attain viral load (VL) suppression. We evaluated associations between depression, self-reported adherence, and longitudinal HIV treatment outcomes in US Military HIV Natural History Study (NHS) participants with and without depression., Methods: Male NHS participants with available ICD-9 data for mental health diagnoses, Center for Epidemiological Studies Depression (CES-D) measures, and self-reported adherence (SRA) were included. ART use was defined as ART initiation between 2006 and 2010, with follow-up through 2015. SRA was defined as taking 95% of ART doses and continuous ART was defined as longitudinal ART use with gaps < 30 days. Continuous VL suppression was defined as maintaining VLs < 200 c/mL on ART. To analyse the association between depression and HIV treatment outcomes, latent class analysis was used to create classes of depression trajectories: low depression (LD), recent onset depression (ROD) and high Depression (HD)., Results: Participants had a mean age of 32 (± 8.3) years at HIV diagnosis, and similar proportions were Caucasian (44.3%) or African American (40.8%). Overall, older participants at HIV diagnosis had greater odds of having 95% self-reported adherence (OR 1.06, 95% CI 1.02-1.12), and African Americans had lower odds (OR 0.41, 95% CI 0.22-0.76) compared to Caucasians (OR 1.49, 95% CI 0.52-4.28). However, there was no difference in SRA by depression trajectory. Participants with HD had an increased odds of taking ART continuously (OR 1.75, 95% CI 0.99-3.09), and those with ROD had significantly higher odds of virologic failure (OR 0.58, 95% CI 0.38-0.91)., Conclusions: Although there was no observed association between depression and SRA, participants with ROD had lower odds of attaining the HIV treatment goal of VL suppression. Continued efforts to identify and aggressively manage mental health disorders is important to success along the HIV care continuum.
- Published
- 2021
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32. A betacoronavirus multiplex microsphere immunoassay detects early SARS-CoV-2 seroconversion and antibody cross reactions.
- Author
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Laing E, Sterling S, Richard S, Epsi N, Phogat S, Samuels E, Yan L, Moreno N, Coles C, Drew M, Mehalko J, English C, Merritt S, Mende K, Chung K, Clifton G, Munster V, de Wit E, Tribble D, Agan B, Esposito D, Lanteri C, Mitre E, Burgess T, and Broder C
- Abstract
Sensitive and specific SARS-CoV-2 antibody assays remain critical for community and hospital-based SARS-CoV-2 surveillance. Here, we developed and applied a multiplex microsphere-based immunoassay (MMIA) for COVD-19 antibody studies that incorporates spike protein trimers of SARS-CoV-2, SARS-CoV-1, MERS-CoV, and the seasonal human betacoronaviruses, HCoV-HKU1 and HCoV-OC43, that enables measurement of off-target pre-existing cross-reactive antibodies. The MMIA performances characteristics are: 98% sensitive and 100% specific for human subject samples collected as early as 10 days from symptom onset. The MMIA permitted the simultaneous identification of SARS-CoV-2 seroconversion and the induction of SARS-CoV-2 IgG antibody cross reactions to SARS-CoV-1 and MERS-CoV. Further, synchronous increases of HCoV-OC43 IgG antibody levels was detected with SARS-CoV-2 seroconversion in a subset of subjects for whom early infection sera were available prior to their SARS-CoV-2 seroconversion, suggestive of an HCoV-OC43 memory response triggered by SARS-CoV-2 infection., Competing Interests: Declarations None of the authors have any conflicts of interest of relevance to disclose.
- Published
- 2020
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33. Prospective International Study of Incidence and Predictors of Immune Reconstitution Inflammatory Syndrome and Death in People Living With Human Immunodeficiency Virus and Severe Lymphopenia.
- Author
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Sereti I, Sheikh V, Shaffer D, Phanuphak N, Gabriel E, Wang J, Nason MC, Roby G, Ngeno H, Kirui F, Pau A, Mican JM, Rupert A, Bishop R, Agan B, Chomchey N, Teeratakulpisarn N, Tansuphaswadikul S, Langat D, Kosgei J, French M, Ananworanich J, and Sawe F
- Subjects
- Adult, CD4 Lymphocyte Count, Female, HIV, Humans, Incidence, Kenya, Male, Prospective Studies, Thailand, HIV Infections complications, HIV Infections drug therapy, Immune Reconstitution Inflammatory Syndrome epidemiology, Lymphopenia epidemiology
- Abstract
Background: Patients living with human immunodeficiency virus (PLWH) with low CD4 counts are at high risk for immune reconstitution inflammatory syndrome (IRIS) and death at antiretroviral therapy (ART) initiation., Methods: We investigated the clinical impact of IRIS in PLWH and CD4 counts <100 cells/μL starting ART in an international, prospective study in the United States, Thailand, and Kenya. An independent review committee adjudicated IRIS events. We assessed associations between baseline biomarkers, IRIS, immune recovery at week 48, and death by week 48 with Cox models., Results: We enrolled 506 participants (39.3% were women). Median age was 37 years, and CD4 count was 29 cells/μL. Within 6 months of ART, 97 (19.2%) participants developed IRIS and 31 (6.5%) died. Participants with lower hemoglobin at baseline were at higher IRIS risk (hazard ratio [HR], 1.2; P = .004). IRIS was independently associated with increased risk of death after adjustment for known risk factors (HR, 3.2; P = .031). Being female (P = .004) and having a lower body mass index (BMI; P = .003), higher white blood cell count (P = .005), and higher D-dimer levels (P = .044) were also significantly associated with increased risk of death. Decision-tree analysis identified hemoglobin <8.5 g/dL as predictive of IRIS and C-reactive protein (CRP) >106 μg/mL and BMI <15.6 kg/m2 as predictive of death., Conclusions: For PLWH with severe immunosuppression initiating ART, baseline low BMI and hemoglobin and high CRP and D-dimer levels may be clinically useful predictors of IRIS and death risk., (Published by Oxford University Press for the Infectious Diseases Society of America 2019.)
- Published
- 2020
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34. Biomedical Response to Neisseria gonorrhoeae and Other Sexually Transmitted Infections in the US Military.
- Author
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Garges E, Early J, Waggoner S, Rahman N, Golden D, Agan B, and Jerse A
- Subjects
- Anti-Bacterial Agents standards, Anti-Bacterial Agents therapeutic use, Drug Resistance, Gonorrhea epidemiology, Gonorrhea therapy, Humans, Neisseria gonorrhoeae drug effects, Neisseria gonorrhoeae pathogenicity, Population Surveillance methods, Sexually Transmitted Diseases epidemiology, United States epidemiology, Military Personnel statistics & numerical data, Sexually Transmitted Diseases therapy
- Abstract
Introduction: Sexually transmitted infections (STIs) continue to plague militaries and defense forces. While the historical recognition of the impact of STIs on operations is evident, contemporary surveillance and research activities are limited. As Neisseria gonorrhoeae and other sexually transmitted pathogens become increasingly resistant to antibiotics, the role of the Department of Defense (DoD) in disease surveillance and clinical research is essential to military Force Health Protection., Methods: The Infectious Disease Clinical Research Program (IDCRP) of the Uniformed Services University of the Health Sciences partnered with the DoD Global Emerging Infections Surveillance (GEIS) program to monitor the distribution of gonorrhea antimicrobial resistance (AMR) both domestically and abroad. The DoD gonococcal reference laboratory and repository was established in 2011 as a resource for confirmatory testing and advanced characterization of isolates collected from sites across the continental United States (CONUS) and GEIS-funded sites outside the continental United States (OCONUS). The IDCRP is currently implementing surveillance efforts at CONUS military clinics, including Madigan Army Medical Center, Naval Medical Center Camp Lejeune, Naval Medical Center Portsmouth, Naval Medical Center San Diego, and San Antonio Military Medical Center (efforts were also previously at Womack Army Medical Center). The reference laboratory and repository receives specimens from OCONUS collaborators, including Armed Forces Research Institute of Medical Sciences (AFRIMS; Bangkok, Thailand), Naval Medical Research Unit No. 3 (NAMRU-3), Ghana Detachment (Accra, Ghana), Naval Medical Research Unit No. 6 (NAMRU-6; Lima, Peru), U.S. Army Medical Research Unit - Georgia (USAMRD-G; Tbilisi, Republic of Georgia), and U.S. Army Medical Research Directorate - Kenya (USAMRD-K; Nairobi, Kenya). The gonococcal surveillance program, to include findings, as well as associated clinical research efforts are described., Results: Among N. gonorrhoeae isolates tested within the United States, 8% were resistant to tetracycline, 2% were resistant to penicillin, and 30% were resistant to ciprofloxacin. To date, only one of the 61 isolates has demonstrated some resistance (MIC=1 μg/ml) to azithromycin. No resistance to cephalosporins has been detected; however, reduced susceptibility (MIC=0.06-0.125 μg/ml) has been observed in 13% of isolates. Resistance is commonly observed in N. gonorrhoeae isolates submitted from OCONUS clinical sites, particularly with respect to tetracycline, penicillin, and ciprofloxacin. While no azithromycin-resistant isolates have been identified from OCONUS sites, reduced susceptibility (MIC=0.125-0.5 μg/ml) to azithromycin was observed in 23% of isolates., Conclusion: Continued monitoring of circulating resistance patterns on a global scale is critical for ensuring appropriate treatments are prescribed for service members that may be infected in the U.S. or while deployed. Domestic surveillance for gonococcal AMR within the Military Health System has indicated that resistance patterns, while variable, are not dramatically different from what is seen in U.S. civilian data. Global patterns of gonococcal AMR have been described through the establishment of a central DoD gonococcal reference laboratory and repository. This repository of global isolates provides a platform for further research and development into biomedical countermeasures against gonococcal infections., (Published by Oxford University Press on behalf of the Association of Military Surgeons of the United States 2019. This work is written by (a) US Government employee(s) and is in the public domain in the US.)
- Published
- 2019
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35. Herpes Zoster Rates Continue to Decline in People Living With Human Immunodeficiency Virus but Remain Higher Than Rates Reported in the General US Population.
- Author
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Gilbert L, Wang X, Deiss R, Okulicz J, Maves R, Schofield C, Ferguson T, Whitman T, Kronmann K, Agan B, and Ganesan A
- Subjects
- Adult, Aged, CD4 Lymphocyte Count, Cohort Studies, Coinfection virology, HIV, Herpes Zoster Vaccine administration & dosage, Humans, Incidence, Middle Aged, United States epidemiology, Young Adult, Coinfection epidemiology, HIV Infections epidemiology, HIV Infections virology, Herpes Zoster epidemiology, Herpesvirus 3, Human immunology
- Abstract
In the antiretroviral therapy era, herpes zoster incidence continued to decline in people living with HIV (PLWH). However, at 0.9 cases/100 person-years, rates in PLWH are substantially higher than the general US population; emphasizing the needs for studies of the subunit vaccine in PLWH., (© The Author(s) 2018. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.)
- Published
- 2019
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36. Age, Race, and At-Risk Drinking in an HIV-infected U.S. Military Cohort.
- Author
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Byrne M, Deiss R, Mesner O, Glancey M, Ganesan A, Okulicz J, Kronmann K, Maves R, Schofield C, Agan B, and Macalino G
- Subjects
- Adult, Alcohol Drinking epidemiology, Chi-Square Distribution, Female, HIV Infections epidemiology, Humans, Male, Middle Aged, Military Personnel statistics & numerical data, Racial Groups statistics & numerical data, Risk Factors, Statistics, Nonparametric, Surveys and Questionnaires, United States epidemiology, Alcohol Drinking psychology, HIV Infections psychology, Military Personnel psychology
- Abstract
Introduction: There is a high prevalence of at-risk drinking in the U.S. military. Among HIV-infected individuals, alcohol abuse confers additional risk for adverse health outcomes. In the military, however, the characteristics of HIV-infected individuals who engage in high-risk drinking are not well defined. The purpose of this study was to assess risk factors associated with at-risk drinking in an HIV-positive longitudinal cohort of DoD beneficiaries., Materials and Methods: Annual prevalence of at-risk drinking was calculated for members of the U.S. Military HIV Natural History Study who initiated highly active antiretroviral therapy (HAART) during or after January 2006 through May 2014; each participant completed at least one self-reported alcohol survey within a year of HAART initiation. Univariate and multivariable logistic regression was used to analyze factors associated with at-risk drinking., Results: Sixty-six percent of subjects (495/752) reported at-risk drinking on at least one survey after HAART initiation. At-risk drinkers were more likely to be Active Duty compared to Retired (OR 0.65 95% CI [0.46, 0.92]). In multivariate models, Caucasian race (OR 3.30 95% CI [2.31, 4.71]); Hispanic/other race (OR 2.17 95% CI [1.51, 3.14]) and younger age (OR 0.61 per 10 years older, [95%CI 0.49, 0.75]) were significantly associated with at-risk drinking. Single relationship status (OR 1.51 95% CI [1.08, 2.13]) was also associated with at-risk drinking., Conclusions: Consistent with general alcohol consumption patterns in the military, we found a high prevalence of at-risk drinking among individuals with HIV infection, which was associated most closely with young, non-African Americans. Targeting interventions toward this group will be important to reduce at-risk drinking and its potential for HIV-related complications., (Published by Oxford University Press on behalf of Association of Military Surgeons of the United States 2018.)
- Published
- 2019
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37. Humoral Antibody Responses to HIV Viral Proteins and to CD4 Among HIV Controllers, Rapid and Typical Progressors in an HIV-Positive Patient Cohort.
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Fink E, Fuller K, Agan B, Berger EA, Saphire A, Quinnan GV, and Elder JH
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- Autoantibodies immunology, Enzyme-Linked Immunosorbent Assay, Female, HIV Antibodies immunology, HIV Infections pathology, Humans, Male, Prospective Studies, Time Factors, Antibody Formation, Autoantibodies blood, CD4 Antigens immunology, Disease Progression, HIV Antibodies blood, HIV Infections immunology, Human Immunodeficiency Virus Proteins immunology
- Abstract
The purpose of this study was to assess humoral antibody responses as a function of disease progression (DP) in a well-defined HIV
+ cohort. We quantified antibodies to HIV-1 gp120, Gag, and CD4 receptor by enzyme-linked immunosorbent assay in sera from a cohort of 97 HIV+ subjects at defined stages of DP. We also measured antibody-dependent cellular cytotoxicity (ADCC) as a function of the clinical status of the patients. We purified antibodies to CD4 and gp120 and assessed them for specificity, ability to block gp120 binding to target cells, ability to block virus infection, and ability to facilitate ADCC. All of the HIV+ patient samples were positive for antibodies to HIV gp120 and p24 and 80% showed evidence of hypergammaglobulinemia. Approximately 10% of cohort members were positive for antibodies to CD4, but we noted no significant correlation relevant to DP. There were statistically significant differences between the groups concerning the level of humoral response to gp120 and Gag. However, we observed no distinction in ability of anti-gp120 antibodies purified from each group to neutralize infection. In addition, there was a statistically significant difference in ADCC, with elite controllers exhibiting significantly lower levels of ADCC than the other five groups. We detected IgA anti-gp120 antibodies, but did not correlate their presence with either DP or ADCC levels. The results are consistent with the interpretation that the humoral antibody response to the antigens assessed here represents a signature of the level of viremia but does not correlate with clinical status of HIV infection., Competing Interests: Author Disclosure Statement No competing financial interests exist.- Published
- 2016
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38. Randomized, Double-Blind, Placebo-Controlled Study on Decolonization Procedures for Methicillin-Resistant Staphylococcus aureus (MRSA) among HIV-Infected Adults.
- Author
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Weintrob A, Bebu I, Agan B, Diem A, Johnson E, Lalani T, Wang X, Bavaro M, Ellis M, Mende K, and Crum-Cianflone N
- Subjects
- Adult, Double-Blind Method, Female, Hexachlorophene administration & dosage, Humans, Male, Methicillin-Resistant Staphylococcus aureus virology, Middle Aged, Mupirocin administration & dosage, Prospective Studies, Staphylococcal Infections microbiology, Staphylococcal Infections virology, Anti-Bacterial Agents administration & dosage, HIV Infections microbiology, Methicillin-Resistant Staphylococcus aureus drug effects, Staphylococcal Infections drug therapy
- Abstract
Background: HIV-infected persons have increased risk of MRSA colonization and skin and soft-tissue infections (SSTI). However, no large clinical trial has examined the utility of decolonization procedures in reducing MRSA colonization or infection among community-dwelling HIV-infected persons., Methods: 550 HIV-infected adults at four geographically diverse US military HIV clinics were prospectively screened for MRSA colonization at five body locations every 6 months during a 2-year period. Those colonized were randomized in a double-blind fashion to nasal mupirocin (Bactroban) twice daily and hexachlorophene (pHisoHex) soaps daily for 7 days compared to placeboes similar in appearance but without specific antibacterial activity. The primary endpoint was MRSA colonization at 6-months post-randomization; secondary endpoints were time to MRSA clearance, subsequent MRSA infections/SSTI, and predictors for MRSA clearance at the 6-month time point., Results: Forty-nine (9%) HIV-infected persons were MRSA colonized and randomized. Among those with 6-month colonization data (80% of those randomized), 67% were negative for MRSA colonization in both groups (p = 1.0). Analyses accounting for missing 6-month data showed no significant differences could have been achieved. In the multivariate adjusted models, randomization group was not associated with 6-month MRSA clearance. The median time to MRSA clearance was similar in the treatment vs. placebo groups (1.4 vs. 1.8 months, p = 0.35). There was no difference on subsequent development of MRSA infections/SSTI (p = 0.89). In a multivariable model, treatment group, demographics, and HIV-specific factors were not predictive of MRSA clearance at the 6-month time point., Conclusion: A one-week decolonization procedure had no effect on MRSA colonization at the 6-month time point or subsequent infection rates among community-dwelling HIV-infected persons. More aggressive or novel interventions may be needed to reduce the burden of MRSA in this population., Trial Registration: ClinicalTrials.gov NCT00631566.
- Published
- 2015
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39. Reply to Yang et al.
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Ganesan A, Mesner O, and Agan B
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- Female, Humans, Male, Antitreponemal Agents administration & dosage, HIV Infections complications, Penicillin G Benzathine administration & dosage, Syphilis complications, Syphilis drug therapy
- Published
- 2015
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40. Short Communication: HIV RNA Levels Predict AIDS-Defining and Non-AIDS-Defining Cancers After Antiretroviral Therapy Initiation Among HIV-Infected Adults.
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Crum-Cianflone NF, Wang X, Ganesan A, Okulicz J, Weintrob A, Lalani T, and Agan B
- Subjects
- Adult, Female, HIV Infections virology, Humans, Incidence, Male, Middle Aged, Prospective Studies, Anti-Retroviral Agents therapeutic use, Antiretroviral Therapy, Highly Active, HIV Infections complications, HIV Infections drug therapy, Neoplasms epidemiology, RNA, Viral blood, Viral Load
- Abstract
Whether poor virologic control is associated with incident cancers after initiation of combination antiretroviral therapy (ART) remains unclear. In a large cohort, time-updated HIV RNA levels ≥1,000 copies/ml predicted AIDS-defining cancers (ADCs), non-AIDS-defining cancers (NADCs), and skin cancers. Virologic control may be an important strategy in reducing cancer events among HIV-infected persons.
- Published
- 2015
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41. HIV viraemia during hepatitis B vaccination shortens the duration of protective antibody levels.
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O'Bryan TA, Rini EA, Okulicz J, Messner O, Ganesan A, Lalani T, Bavaro MF, O'Connell RJ, Agan BK, and Landrum ML
- Subjects
- Adult, CD4 Lymphocyte Count, Cohort Studies, Female, Follow-Up Studies, HIV Infections complications, HIV Infections virology, Hepatitis B immunology, Hepatitis B virology, Hepatitis B Surface Antigens immunology, Hepatitis B Vaccines immunology, Humans, Incidence, Kaplan-Meier Estimate, Male, Proportional Hazards Models, RNA, Viral blood, Risk Factors, Time Factors, United States epidemiology, Vaccination, Viral Load, Viremia virology, HIV Infections immunology, Hepatitis B prevention & control, Hepatitis B Antibodies immunology, Hepatitis B Vaccines administration & dosage, Hepatitis B virus immunology, Immunocompromised Host immunology, Military Personnel, Viremia immunology
- Abstract
Objectives: Individuals with HIV infection often have early waning of protective antibody following hepatitis B virus (HBV) vaccination. HIV viraemia at the time of vaccination may limit the durability of serum anti-HBV surface antibody (HBsAb) levels. We investigated the relationship of HIV plasma viral load (VL) and duration of HBsAb among vaccinees enrolled in the US Military HIV Natural History Study., Methods: We included in the study participants who had no history of prior HBV infection, who had received all HBV vaccine doses after HIV diagnosis, and who had demonstrated an initial vaccine response, defined as HBsAb ≥ 10 IU/L. Responders were retrospectively followed with serial HBV serology from the time of the last vaccine dose until the development of waning (HBsAb < 10 IU/L) or the last HBsAb measurement. Time to and risk for waning were evaluated with Kaplan-Meier survival methods and Cox proportional hazards models, respectively., Results: A total of 186 initial vaccine responders were identified. During 570 person-years of observation, HBsAb waned in 52 of 186 participants (28%). The cumulative proportion maintaining HBsAb ≥ 10 IU/L was 83% at 2 years and 56% at 5 years. Participants with an undetectable VL [hazard ratio (HR) 0.37; 95% confidence interval (CI) 0.18-0.76] or with detectable VL of ≤ 10 000 copies/mL (HR 0.46; 95% CI 0.21-1.00) had reduced risk of waning. Other factors including age, number of vaccine doses, CD4 count, and receipt of highly active antiretroviral therapy (HAART) were not significantly associated with risk of waning HBsAb., Conclusions: Undetectable or low HIV VL at the time of HBV vaccination is associated with greater durability of vaccine response in patients with HIV infection., (© 2015 British HIV Association.)
- Published
- 2015
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42. Inference for Surrogate Endpoint Validation in the Binary Case.
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Bebu I, Mathew T, and Agan B
- Subjects
- Algorithms, Causality, Computer Simulation, Confidence Intervals, HIV Infections mortality, HIV Infections therapy, Humans, Logistic Models, Macular Degeneration drug therapy, Prognosis, Randomized Controlled Trials as Topic statistics & numerical data, Reproducibility of Results, Endpoint Determination methods, Endpoint Determination statistics & numerical data
- Abstract
Surrogate endpoint validation for a binary surrogate endpoint and a binary true endpoint is investigated using the criteria of proportion explained (PE) and the relative effect (RE). The concepts of generalized confidence intervals and fiducial intervals are used for computing confidence intervals for PE and RE. The numerical results indicate that the proposed confidence intervals are satisfactory in terms of coverage probability, whereas the intervals based on Fieller's theorem and the delta method fall short in this regard. Our methodology can also be applied to interval estimation problems in a causal inference-based approach to surrogate endpoint validation.
- Published
- 2015
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43. CHALLENGES IN MANAGEMENT OF WARFARIN ANTI-COAGULATION IN ADVANCED HIV/AIDS PATIENTS WITH VENOUS THROMBOTIC EVENTS--A CASE SERIES FROM A RESEARCH CLINIC IN RURAL KERICHO, KENYA.
- Author
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Tarus NK, Pau AK, Sereti I, Kirui FK, Sawe FK, Agan BK, Momanyi LM, Ngeno HC, Koskei GK, and Shaffer DN
- Subjects
- Adult, Anticoagulants administration & dosage, Anticoagulants pharmacology, CD4 Lymphocyte Count methods, Disease Management, Drug Interactions, Drug Monitoring, Female, Humans, International Normalized Ratio methods, Kenya epidemiology, Male, Middle Aged, Patient Acuity, Rural Population statistics & numerical data, Ultrasonography, Doppler, Duplex methods, Antiretroviral Therapy, Highly Active methods, HIV Infections complications, HIV Infections epidemiology, HIV Infections physiopathology, Patient Care Team, Venous Thrombosis diagnosis, Venous Thrombosis drug therapy, Venous Thrombosis epidemiology, Venous Thrombosis etiology, Warfarin administration & dosage, Warfarin pharmacokinetics
- Abstract
Background: Venous thrombotic events (VTE) occur at high ratesin HIV/AIDS patients and are likely under-diagnosed in rural sub-Saharan Africa., Objective: To describe clinical presentations and challenges in the management of VTE in patients with advanced HIV/AIDS., Design: Case series from patients enrolled in a prospective observational cohort study., Settings: A clinical research centre in rural Kericho, Kenya., Subjects: Two hundred patients with median age 38 (30-47) years, BMI 16.9 (12.4-20.3) kg/m2, haemoglobin 9.3 (6.8-13.4) g/dL, CD4+ T-cell count 27 (4-77) cells/mm and plasma HIV RNA 5.23 (3.70-5.88) log10 copies/mL., Interventions: VTE cases were diagnosed by clinical presentation and Doppler/ radiographic confirmation. Anti-coagulation therapy was managed by a multidisciplinary team; patients were initiated on enoxaparin or heparin followed by warfarin., Results: Over two years,11patients (5.5%) experienced VTE. All but one (10/11,90.9%) case occurred within six months of starting ART. Nine patients had peripheral VTE (five popliteal, four femoral) and two had cerebral sinus thromboses. VTE was diagnosed 52 (1-469) days after ART initiation, and 81.8% of cases were outpatients at presentation. All patients received at least one concomitant medication that could significantly interact with warfarin (efavirenz, nevirapine, lopinavir/ritonavir, rifampicin, trimethoprim-sulfamethoxazole, and fluconazole). A median of 39 (10-180) days and eight (4-22) additional clinic visits were required to achieve/maintain a therapeutic INR of 2-3. Two minor bleeding complications occurred. No recurrent VTE cases were observed., Conclusion: Consideration of VTE and preparedness for management in patients with advanced HIV/AIDS starting ART is critical in sub-Saharan Africa. Overcoming challenges in anti-coagulation is possible in rural settings using a multidisciplinary team approach.
- Published
- 2013
44. Cumulative viral load and virologic decay patterns after antiretroviral therapy in HIV-infected subjects influence CD4 recovery and AIDS.
- Author
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Marconi VC, Grandits G, Okulicz JF, Wortmann G, Ganesan A, Crum-Cianflone N, Polis M, Landrum M, Dolan MJ, Ahuja SK, Agan B, and Kulkarni H
- Subjects
- Adult, CD4 Lymphocyte Count, CD4-Positive T-Lymphocytes virology, Cohort Studies, Female, HIV Infections immunology, HIV-1, Humans, Male, Prospective Studies, Serologic Tests, Treatment Outcome, Viral Load, Antiretroviral Therapy, Highly Active, CD4-Positive T-Lymphocytes drug effects, CD4-Positive T-Lymphocytes immunology, HIV Infections drug therapy, HIV Infections virology
- Abstract
Background: The impact of viral load (VL) decay and cumulative VL on CD4 recovery and AIDS after highly-active antiretroviral therapy (HAART) is unknown., Methods and Findings: Three virologic kinetic parameters (first year and overall exponential VL decay constants, and first year VL slope) and cumulative VL during HAART were estimated for 2,278 patients who initiated HAART in the U.S. Military HIV Natural History Study. CD4 and VL trajectories were computed using linear and nonlinear Generalized Estimating Equations models. Multivariate Poisson and linear regression models were used to determine associations of VL parameters with CD4 recovery, adjusted for factors known to correlate with immune recovery. Cumulative VL higher than the sample median was independently associated with an increased risk of AIDS (relative risk 2.38, 95% confidence interval 1.56-3.62, p<0.001). Among patients with VL suppression, first year VL decay and slope were independent predictors of early CD4 recovery (p = 0.001) and overall gain (p<0.05). Despite VL suppression, those with slow decay during the first year of HAART as well as during the entire therapy period (overall), in general, gained less CD4 cells compared to the other subjects (133 vs. 195.4 cells/µL; p = 0.001) even after adjusting for potential confounders., Conclusions: In a cohort with free access to healthcare, independent of established predictors of AIDS and CD4 recovery during HAART, cumulative VL and virologic decay patterns were associated with AIDS and distinct aspects of CD4 reconstitution.
- Published
- 2011
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45. The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.
- Author
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Pereyra F, Jia X, McLaren PJ, Telenti A, de Bakker PI, Walker BD, Ripke S, Brumme CJ, Pulit SL, Carrington M, Kadie CM, Carlson JM, Heckerman D, Graham RR, Plenge RM, Deeks SG, Gianniny L, Crawford G, Sullivan J, Gonzalez E, Davies L, Camargo A, Moore JM, Beattie N, Gupta S, Crenshaw A, Burtt NP, Guiducci C, Gupta N, Gao X, Qi Y, Yuki Y, Piechocka-Trocha A, Cutrell E, Rosenberg R, Moss KL, Lemay P, O'Leary J, Schaefer T, Verma P, Toth I, Block B, Baker B, Rothchild A, Lian J, Proudfoot J, Alvino DM, Vine S, Addo MM, Allen TM, Altfeld M, Henn MR, Le Gall S, Streeck H, Haas DW, Kuritzkes DR, Robbins GK, Shafer RW, Gulick RM, Shikuma CM, Haubrich R, Riddler S, Sax PE, Daar ES, Ribaudo HJ, Agan B, Agarwal S, Ahern RL, Allen BL, Altidor S, Altschuler EL, Ambardar S, Anastos K, Anderson B, Anderson V, Andrady U, Antoniskis D, Bangsberg D, Barbaro D, Barrie W, Bartczak J, Barton S, Basden P, Basgoz N, Bazner S, Bellos NC, Benson AM, Berger J, Bernard NF, Bernard AM, Birch C, Bodner SJ, Bolan RK, Boudreaux ET, Bradley M, Braun JF, Brndjar JE, Brown SJ, Brown K, Brown ST, Burack J, Bush LM, Cafaro V, Campbell O, Campbell J, Carlson RH, Carmichael JK, Casey KK, Cavacuiti C, Celestin G, Chambers ST, Chez N, Chirch LM, Cimoch PJ, Cohen D, Cohn LE, Conway B, Cooper DA, Cornelson B, Cox DT, Cristofano MV, Cuchural G Jr, Czartoski JL, Dahman JM, Daly JS, Davis BT, Davis K, Davod SM, DeJesus E, Dietz CA, Dunham E, Dunn ME, Ellerin TB, Eron JJ, Fangman JJ, Farel CE, Ferlazzo H, Fidler S, Fleenor-Ford A, Frankel R, Freedberg KA, French NK, Fuchs JD, Fuller JD, Gaberman J, Gallant JE, Gandhi RT, Garcia E, Garmon D, Gathe JC Jr, Gaultier CR, Gebre W, Gilman FD, Gilson I, Goepfert PA, Gottlieb MS, Goulston C, Groger RK, Gurley TD, Haber S, Hardwicke R, Hardy WD, Harrigan PR, Hawkins TN, Heath S, Hecht FM, Henry WK, Hladek M, Hoffman RP, Horton JM, Hsu RK, Huhn GD, Hunt P, Hupert MJ, Illeman ML, Jaeger H, Jellinger RM, John M, Johnson JA, Johnson KL, Johnson H, Johnson K, Joly J, Jordan WC, Kauffman CA, Khanlou H, Killian RK, Kim AY, Kim DD, Kinder CA, Kirchner JT, Kogelman L, Kojic EM, Korthuis PT, Kurisu W, Kwon DS, LaMar M, Lampiris H, Lanzafame M, Lederman MM, Lee DM, Lee JM, Lee MJ, Lee ET, Lemoine J, Levy JA, Llibre JM, Liguori MA, Little SJ, Liu AY, Lopez AJ, Loutfy MR, Loy D, Mohammed DY, Man A, Mansour MK, Marconi VC, Markowitz M, Marques R, Martin JN, Martin HL Jr, Mayer KH, McElrath MJ, McGhee TA, McGovern BH, McGowan K, McIntyre D, Mcleod GX, Menezes P, Mesa G, Metroka CE, Meyer-Olson D, Miller AO, Montgomery K, Mounzer KC, Nagami EH, Nagin I, Nahass RG, Nelson MO, Nielsen C, Norene DL, O'Connor DH, Ojikutu BO, Okulicz J, Oladehin OO, Oldfield EC 3rd, Olender SA, Ostrowski M, Owen WF Jr, Pae E, Parsonnet J, Pavlatos AM, Perlmutter AM, Pierce MN, Pincus JM, Pisani L, Price LJ, Proia L, Prokesch RC, Pujet HC, Ramgopal M, Rathod A, Rausch M, Ravishankar J, Rhame FS, Richards CS, Richman DD, Rodes B, Rodriguez M, Rose RC 3rd, Rosenberg ES, Rosenthal D, Ross PE, Rubin DS, Rumbaugh E, Saenz L, Salvaggio MR, Sanchez WC, Sanjana VM, Santiago S, Schmidt W, Schuitemaker H, Sestak PM, Shalit P, Shay W, Shirvani VN, Silebi VI, Sizemore JM Jr, Skolnik PR, Sokol-Anderson M, Sosman JM, Stabile P, Stapleton JT, Starrett S, Stein F, Stellbrink HJ, Sterman FL, Stone VE, Stone DR, Tambussi G, Taplitz RA, Tedaldi EM, Telenti A, Theisen W, Torres R, Tosiello L, Tremblay C, Tribble MA, Trinh PD, Tsao A, Ueda P, Vaccaro A, Valadas E, Vanig TJ, Vecino I, Vega VM, Veikley W, Wade BH, Walworth C, Wanidworanun C, Ward DJ, Warner DA, Weber RD, Webster D, Weis S, Wheeler DA, White DJ, Wilkins E, Winston A, Wlodaver CG, van't Wout A, Wright DP, Yang OO, Yurdin DL, Zabukovic BW, Zachary KC, Zeeman B, and Zhao M
- Subjects
- Black or African American genetics, Alleles, Amino Acids physiology, CD8-Positive T-Lymphocytes immunology, Cohort Studies, Disease Progression, Genome-Wide Association Study, HIV Antigens immunology, HIV Infections ethnology, HIV Infections virology, HIV Long-Term Survivors, HLA-A Antigens chemistry, HLA-A Antigens genetics, HLA-A Antigens immunology, HLA-A Antigens metabolism, HLA-B Antigens chemistry, HLA-B Antigens immunology, HLA-B Antigens metabolism, HLA-C Antigens chemistry, HLA-C Antigens genetics, HLA-C Antigens immunology, HLA-C Antigens metabolism, Haplotypes, Hispanic or Latino genetics, Humans, Immunity, Innate, Logistic Models, Models, Molecular, Polymorphism, Single Nucleotide, Protein Conformation, Viral Load, White People genetics, Antigen Presentation, Genes, MHC Class I, HIV Infections genetics, HIV Infections immunology, HIV-1 immunology, HLA-B Antigens genetics
- Abstract
Infectious and inflammatory diseases have repeatedly shown strong genetic associations within the major histocompatibility complex (MHC); however, the basis for these associations remains elusive. To define host genetic effects on the outcome of a chronic viral infection, we performed genome-wide association analysis in a multiethnic cohort of HIV-1 controllers and progressors, and we analyzed the effects of individual amino acids within the classical human leukocyte antigen (HLA) proteins. We identified >300 genome-wide significant single-nucleotide polymorphisms (SNPs) within the MHC and none elsewhere. Specific amino acids in the HLA-B peptide binding groove, as well as an independent HLA-C effect, explain the SNP associations and reconcile both protective and risk HLA alleles. These results implicate the nature of the HLA-viral peptide interaction as the major factor modulating durable control of HIV infection.
- Published
- 2010
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46. The association of ethnicity with antibody responses to pneumococcal vaccination among adults with HIV infection.
- Author
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Crum-Cianflone NF, Roediger M, Huppler Hullsiek K, Ganesan A, Landrum M, Weintrob A, Agan B, Medina S, Rahkola J, Hale B, and Janoff EN
- Subjects
- Adult, Black or African American, Antibodies, Bacterial immunology, Female, HIV Infections microbiology, Humans, Immunization, Secondary, Immunoglobulin G blood, Immunoglobulin G immunology, Male, Pneumococcal Infections immunology, Randomized Controlled Trials as Topic, Vaccines, Conjugate immunology, White People, Antibodies, Bacterial blood, Antibody Formation, HIV Infections immunology, Pneumococcal Infections prevention & control, Pneumococcal Vaccines immunology
- Abstract
Ethnicity may be associated with the incidence of pneumococcal infections and the frequency of protective vaccine responses. Earlier studies have suggested that HIV-infected persons of black ethnicity develop less robust immune responses to pneumococcal vaccination that may relate to their higher incidence of invasive disease. We evaluated the association of ethnicity with capsule-specific antibody responses to pneumococcal revaccination, with either the pneumococcal conjugate (PCV) or polysaccharide (PPV) vaccines among 188 HIV-infected adults. The proportion of the 77 African Americans (AA) and 111 Caucasians with comparable virologic and immunologic parameters who achieved a positive immune response (≥2-fold rise in capsule-specific IgG from baseline with post-vaccination value ≥1 μg/mL for ≥2 of 4 serotypes) at day 60 after revaccination was similar (43% vs. 49%, respectively, p=0.65). Results were also similar when vaccine types (PPV and PCV) were examined separately. Mean changes in log(10) transformed IgG levels from baseline to days 60 and 180 post-vaccination were also not significantly different between AA and Caucasians. In summary, in this ethnically diverse cohort with equal access to care, we did not observe differential antibody responses between AA and Caucasian HIV-infected adults after pneumococcal revaccination., (Published by Elsevier Ltd.)
- Published
- 2010
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47. Trends and causes of hospitalizations among HIV-infected persons during the late HAART era: what is the impact of CD4 counts and HAART use?
- Author
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Crum-Cianflone NF, Grandits G, Echols S, Ganesan A, Landrum M, Weintrob A, Barthel R, and Agan B
- Subjects
- Adult, Age Factors, Female, HIV Infections drug therapy, HIV Infections immunology, Hospitalization statistics & numerical data, Humans, Male, Multivariate Analysis, Poisson Distribution, Prospective Studies, Risk Factors, Antiretroviral Therapy, Highly Active statistics & numerical data, CD4 Lymphocyte Count, HIV Infections epidemiology, Hospitalization trends, Military Personnel
- Abstract
Background: Declining rates of hospitalizations occurred shortly after the availability of highly active antiretroviral therapy (HAART). However, trends in the late HAART era are less defined, and data on the impact of CD4 counts and HAART use on hospitalizations are needed., Methods: We evaluated hospitalization rates from 1999 to 2007 among HIV-infected persons enrolled in a large US military cohort. Poisson regression was used to compare hospitalization rates per year and to examine factors associated with hospitalization., Results: Of the 2429 participants, 822 (34%) were hospitalized at least once with 1770 separate hospital admissions. The rate of hospitalizations (137 per 1000 person-years) was constant over the study period [relative rate (RR) 1.00 per year change, 95% confidence interval: 0.98 to 1.02]. The hospitalization rates due to skin infections (RR: 1.50, P = 0.02), methicillin-resistant staphylococcus aureus (RR: 3.19, P = 0.03), liver disease (RR: 1.71, P = 0.04), and surgery (RR: 1.17, P = 0.04) significantly increased over time, whereas psychological causes (RR: 0.60, P < 0.01) and trauma (RR: 0.54, P < 0.01) decreased. In the multivariate model, higher nadir CD4 (RR: 0.92 per 50 cells, P < 0.01) and higher proximal CD4 counts (RR of 0.71 for 350-499 vs. <350 cells/mm(3) and RR 0.67 for > or = 500 vs. 350 cells/mm(3), both P < 0.01) were associated with lower risk of hospitalization. Risk of hospitalization was constant for proximal CD4 levels above 350 (RR: 0.94 P = 0.51, CD4 > or = 500 vs. 350-499). HAART was associated with a reduced risk of hospitalization among those with a CD4 <350 (RR: 0.72, P = 0.02) but had smaller estimated and nonsignificant effects at higher CD4 levels (RR: 0.81, P = 0.33 and 1.06, P = 0.71 for CD4 350-499 and > or = 500, respectively)., Conclusions: Hospitalizations continue to occur at high rates among HIV-infected persons with increasing rates for skin infections, methicillin-resistant staphylococcus aureus, liver disease, and surgeries. Factors associated with a reduced risk of hospitalization include CD4 counts >350 cells per cubic millimeter and HAART use among patients with a CD4 count <350 cells per cubic millimeter.
- Published
- 2010
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48. Herpes simplex virus type 2 and HIV infection among US military personnel: implications for health prevention programmes.
- Author
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Bautista CT, Singer DE, O'Connell RJ, Crum-Cianflone N, Agan BK, Malia JA, Sanchez JL, Peel SA, Michael NL, and Scott PT
- Subjects
- Adolescent, Adult, Age Factors, Case-Control Studies, Female, HIV Infections prevention & control, Herpes Genitalis complications, Humans, Male, Prevalence, Risk Factors, HIV Infections etiology, Herpes Genitalis epidemiology, Military Personnel
- Abstract
US military personnel are routinely screened for HIV infection. Herpes simplex virus type 2 (HSV-2) is a risk factor for HIV acquisition. To determine the association between HSV-2 and HIV, a matched case-control study was conducted among US Army and Air Force service members with incident HIV infections (cases) randomly matched with two HIV-uninfected service members (controls) between 2000 and 2004. HSV-2 prevalence was significantly higher among cases (30.3%, 138/456) than among controls (9.7%, 88/912, P < 0.001). HSV-2 was strongly associated with HIV in univariate (odds ratio [OR] = 4.2, 95% confidence interval [CI] = 3.1-5.8) and multiple analyses (adjusted [OR] = 3.9, 95% CI = 2.8-5.6). The population attributable risk percentage of HIV infection due to HSV-2 was 23%. Identifying HSV-2 infections may afford the opportunity to provide targeted behavioural interventions that could decrease the incidence of HIV infections in the US military population; further studies are needed.
- Published
- 2009
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49. The impact of nelfinavir exposure on cancer development among a large cohort of HIV-infected patients.
- Author
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Crum-Cianflone NF, Hullsiek KH, Marconi V, Weintrob A, Ganesan A, Barthel RV, Fraser S, Roediger MP, Agan B, and Wegner S
- Subjects
- Adult, Antiretroviral Therapy, Highly Active, Cohort Studies, Female, HIV Infections complications, Humans, Male, Neoplasms etiology, Neoplasms prevention & control, Proportional Hazards Models, Retrospective Studies, Risk, Anticarcinogenic Agents administration & dosage, HIV Infections drug therapy, HIV Protease Inhibitors administration & dosage, Nelfinavir administration & dosage, Neoplasms epidemiology
- Abstract
Background: Preclinical studies suggest that the antiretroviral agent, nelfinavir mesylate (NFV), may have antineoplastic properties. The relationship between NFV and cancer incidence among HIV-infected patients is unknown., Methods: We evaluated the impact of NFV on cancer development in a large cohort of HIV-infected persons with 108 cancer events during 13,421 person-years of follow-up. Using multivariate time-updated Cox proportional hazard models, the risk of cancer among those receiving NFV were compared to those on non-NFV antiretroviral regimens., Results: The risk of cancer among those receiving NFV was similar to those on non-NFV antiretroviral regimens (hazard ratio 1.0, 95% confidence interval 0.5, 1.7, P = 0.90). We also examined AIDS-defining and non-AIDS-defining cancers separately and found no significant associations between NFV use and cancer risk. Antiretroviral use, with or without a protease inhibitor (PI) component, was associated with a reduced risk of AIDS-defining cancers compared with no antiretroviral therapy; however, the risk of cancer was the same among those using PI or PI-sparing regimens., Discussion: Despite reports that NFV may have tumoricidal activity, we found no significant relationship between NFV or PI use compared with other antiretrovirals and the risk of developing cancer among a large cohort of HIV-infected persons.
- Published
- 2009
- Full Text
- View/download PDF
50. Azithromcyin might not protect against Treponema pallidum infection or reactivation in HIV type 1-infected patients.
- Author
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Spooner K, Barthel RV, Robertson J, Merritt T, Bradley W, Taylor-Means S, Crum N, Armstrong A, and Agan B
- Subjects
- Humans, Male, Secondary Prevention, Syphilis microbiology, Treponema pallidum, Anti-Bacterial Agents therapeutic use, Azithromycin therapeutic use, HIV Infections complications, Syphilis complications, Syphilis prevention & control
- Published
- 2005
- Full Text
- View/download PDF
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