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Sand waves are found on shallow, sandy seabeds throughout the world and their dynamics may pose an imminent threat to offshore construction. Therefore, there is a pressing need to understand bed level dynamics in sand wave areas. These bed level dynamics lead to variations in sand wave shape and migration rate over time. However, these variations cannot be explained with the present-day process-based sand wave models, which all include a purely periodic tidal forcing. To explain these fluctuations a more intricate description of the hydrodynamics is necessary. The aim of this study is to explore the importance of time-varying, non-tidal currents for sand wave dynamics in the North Sea. We adopted the three-dimensional Delft3D-Flexible Mesh model, and were able to reconstruct time-varying, non-tidal currents on top of the periodic tidal forcing, while significantly reducing computation times. The simulated currents and water levels showed a good agreement with in-situ measurements. Compared to the situation with only tidal forcing, the simulated sedimentation and erosion rates were amplified up to 15 times due to time-varying, non-tidal currents. Additionally, periods of net erosion were found at locations in the sand wave transect where tidally forced models only showed net-sedimentation. It is therefore important to consider time-varying, non-tidal currents when predicting future sand wave dynamics in the field. • The reproduction of observed hydrodynamics is improved significantly compared to previous sand wave modelling approaches. • Effects of time-varying, non-tidal currents on sediment transport in sand wave fields are quantified. • Net sedimentation rates due to time-varying, non-tidal currents are be up to 15 times larger than the tidally induced rates. • First application of Delft3D FM software to study sand wave dynamics leads to a significant decrease in computation time. • Excluding time-varying, non-tidal currents can lead to underestimation of sand wave migration and trench infill rates. [ABSTRACT FROM AUTHOR]