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Assessing the limitations of microbial metabolic resources is crucial for understanding plantation soil quality and enhancing fertility management. However, the variation of microbial resource limitations at the aggregate level in response to changes in stands remains unclear. This research explores carbon (C), nitrogen (N), and phosphorus (P) limitations affecting microbial metabolism in bulk soils and aggregates in two mixed and one pure Chinese fir stands in subtropical China, analyzing resource limitations concerning soil carbon, nutrients, and microbial indicators. The results revealed that microbes in all aggregates of the pure stands and in the micro aggregates (<0.25 mm) of the three stands were relatively limited by C and P. In contrast, microbial metabolism was more N-limited in macroaggregates (>2 mm) and small aggregates (2–0.25 mm) in the mixed stands. Additionally, in the mixed stands the proportion of soil macroaggregates increased, and that of micro aggregates decreased, resulting in a shift from C and P limitation to N limitation for bulk soil microbial metabolism. Redundancy analysis identified soil aggregate organic carbon and nutrient content as the main factors affecting microbial resource limitation, rather than their stoichiometric ratios. Pathway analysis further confirmed that soil nutrients and their stoichiometric ratios indirectly influenced soil microbe resource limitation by regulating microbial biomass, microbial respiration, and extracellular enzyme activities. Thus, the impact of mixed plantations on soil nutrients and microbial activity at the aggregate level may be crucial for maintaining land fertility and achieving sustainability. [ABSTRACT FROM AUTHOR]