Search

Canopy defoliation is an important source of disturbance in forest ecosystems that has rarely been represented in large-scale manipulation experiments. Scalable crown to canopy level experimental defoliation is needed to disentangle the effects of variable intensity, timing, and frequency on forest structure, function, and mortality. We present a novel pressurewashing-based defoliation method that can be implemented at the canopy-scale, throughout the canopy volume, targeted to individual leaves or trees, and completed within a timeframe of hours or days. Pressure washing proved successful at producing consistent leaf-level and whole-canopy defoliation, with 10%-20% reduction in leaf area index and consistent leaf surface area removal across branches and species. This method allows for stand-scale experimentation on defoliation disturbance in forested ecosystems and has the potential for broad application. Studies utilizing this standardized method could promote mechanistic understanding of defoliation effects on ecosystem structure and function and development of synthetic understanding across forest types, ecoregions, and defoliation sources. Key words: defoliation, experiment, herbivory, canopy, disturbance. La defoliation du couvert forestier est une source importante de perturbation dans les ecosystemes forestiers qui a rarement ete etudiee dans des experiences de manipulation a grande echelle. Une defoliation experimentale transposable de l'echelle de la cime a celle du couvert forestier est necessaire pour distinguer les effets de la variation de l'intensite, du moment et de la frequence sur la structure, la fonction et la mortalite de la foret. Nous presentons une nouvelle methode de defoliation fondee sur le lavage a la pression qui peut etre : appliquee a l'echelle du couvert forestier, a tout le volume du couvert forestier, appliquee a des arbres ou des feuilles individuellement et realisee a l'interieur d'une periode de quelques heures a quelques jours. Le lavage a la pression a reussi a produire une defoliation constante a l'echelle des feuilles et de l'ensemble du couvert forestier avec une reduction de 10-20 % de l'indice de surface foliaire et l'elimination d'une surface foliaire constante parmi les branches et les especes. Cette methode permet d'experimenter a l'echelle du peuplement avec les perturbations causees par une defoliation dans les ecosystemes forestiers et pourrait avoir un vaste champ d'application. Des etudes utilisant cette methode standardisee pourraient faciliter la comprehension mecaniste des effets de la defoliation sur les fonctions et la structure des ecosystemes ainsi que la comprehension synthetique des types forestiers, des ecoregions et des sources de defoliation. [Traduit par la Redaction] Mots-cles: defoliation, experimentation, broutage, couvert forestier, perturbation., 1. Introduction Large-scale experimental manipulations have been essential to advancing knowledge about ecosystem processes (e.g., Ainsworth and Long 2005; Templer et al. 2017). For example, experiments emulating variable disturbance severity, [...]

The breakdown of plant material fuels soil functioning and biodiversity. Currently, process understanding of global decomposition patterns and the drivers of such patterns are hampered by the lack of coherent large‐scale datasets. We buried 36,000 individual litterbags (tea bags) worldwide and found an overall negative correlation between initial mass‐loss rates and stabilization factors of plant‐derived carbon, using the Tea Bag Index (TBI). The stabilization factor quantifies the degree to which easy‐to‐degrade components accumulate during early‐stage decomposition (e.g. by environmental limitations). However, agriculture and an interaction between moisture and temperature led to a decoupling between initial mass‐loss rates and stabilization, notably in colder locations. Using TBI improved mass‐loss estimates of natural litter compared to models that ignored stabilization. Ignoring the transformation of dead plant material to more recalcitrant substances during early‐stage decomposition, and the environmental control of this transformation, could overestimate carbon losses during early decomposition in carbon cycle models. [ABSTRACT FROM AUTHOR]

Moderate severity disturbances, those that do not result in stand replacement, play an essential role in ecosystem dynamics. Despite the prevalence of moderate severity disturbances and the significant impacts they impose on forest functioning, little is known about their effects on forest canopy structure and how these effects differ over time across a range of disturbance severities and disturbance types.Using longitudinal data from the National Ecological Observatory Network project, we assessed the effects of three moderate severity press disturbances (beech bark disease, hemlock woolly adelgid and emerald ash borer, which are characterized by continuous disturbance and sustained mortality) and three moderate severity pulse disturbances (spring cankerworm moth, spongy moth and ground fire, which are associated with discrete and relatively short mortalities) on temperate forest canopy structure in eastern US. We studied (1) how light detection and ranging (LiDAR)‐derived metrics of canopy structure change in response to disturbance and (2) whether initial canopy complexity offsets impact of disturbances on canopy structure over time. We used a mixed‐effects modelling framework which included a non‐linear term for time to represent changes in canopy structure caused by disturbance, and interactions between time and both disturbance intensity and initial canopy complexity.We discovered that high intensity of both press and pulse disturbances inhibited canopy height growth while low intensity pulse disturbances facilitated it. In addition, high intensity pulse disturbances facilitated increases in the complexity of the canopy over time. Concerning the impact of initial canopy complexity, we found that the initial canopy complexity of disturbed plots altered the effects of moderate disturbances, indicating potential resilience effects.Synthesis. This study used repeated measurements of LiDAR data to examine the effects of moderate disturbances on various dimensions of forest canopy structure, including height, openness, density and complexity. Our study indicates that both press and pulse disturbances can inhibit canopy height growth over time. However, while the impact of press disturbances on other dimensions of canopy structure could not be clearly detected, likely because of compensatory growth, the impact of pulse disturbances over time was more readily apparent using multi‐temporal LiDAR data. Furthermore, our findings suggest that canopy complexity might help to mitigate the impact of moderate disturbances on canopy structures over time. Overall, our research highlights the usefulness of multi‐temporal LiDAR data for assessing the structural changes in forest canopies caused by moderate severity disturbances. [ABSTRACT FROM AUTHOR]

The measurement of forest structure has evolved steadily due to advances in technology, methodology, and theory. Such advances have greatly increased our capacity to describe key forest structural elements and resulted in a range of measurement approaches from traditional analog tools such as measurement tapes to highly derived and computationally intensive methods such as advanced remote sensing tools (e.g., lidar, radar). This assortment of measurement approaches results in structural metrics unique to each method, with the caveat that metrics may be biased or constrained by the measurement approach taken. While forest structural diversity (FSD) metrics foster novel research opportunities, understanding how they are measured or derived, limitations of the measurement approach taken, as well as their biological interpretation is crucial for proper application. We review the measurement of forest structure and structural diversity—an umbrella term that includes quantification of the distribution of functional and biotic components of forests. We consider how and where these approaches can be used, the role of technology in measuring structure, how measurement impacts extend beyond research, and current limitations and potential opportunities for future research. [ABSTRACT FROM AUTHOR]

Gradient and scale are two key concepts in ecology and evolution that are closely related but inherently distinct. While scale commonly refers to the dimensional space of a specific ecological/evolutionary (eco–evo) issue, gradient measures the range of a given variable. Gradient and scale can jointly and interactively influence eco–evo patterns. Extensive previous research investigated how changing scales may affect the observation and interpretation of eco–evo patterns; however, relatively little attention has been paid to the role of changing gradients. Here, synthesizing recent research progress, we suggest that the role of scale in the emergence of ecological patterns should be evaluated in conjunction with considering the underlying environmental gradients. This is important because, in most studies, the range of the gradient is often part of its full potential range. The difference between sampled (partial) versus potential (full) environmental gradients may profoundly impact observed eco–evo patterns and alter scale–gradient relationships. Based on observations from both field and experimental studies, we illustrate the underlying features of gradients and how they may affect observed patterns, along with the linkages of these features to scales. Since sampled gradients often do not cover their full potential ranges, we discuss how the breadth and the starting and ending positions of key gradients may affect research design and data interpretation. We then outline potential approaches and related perspectives to better integrate gradient with scale in future studies. [ABSTRACT FROM AUTHOR]

Airborne Laser Scanners (ALS) and Terrestrial Laser Scanners (TLS) are two lidar systems frequently used for remote sensing forested ecosystems. The aim of this study was to compare crown metrics derived from TLS, ALS, and a combination of both for describing the crown structure and fuel attributes of longleaf pine (Pinus palustris Mill.) dominated forest located at Eglin Air Force Base (AFB), Florida, USA. The study landscape was characterized by an ALS and TLS data collection along with field measurements within three large (1963 m2 each) plots in total, each one representing a distinct stand condition at Eglin AFB. Tree-level measurements included bole diameter at breast height (DBH), total height (HT), crown base height (CBH), and crown width (CW). In addition, the crown structure and fuel metrics foliage biomass (FB), stem branches biomass (SB), crown biomass (CB), and crown bulk density (CBD) were calculated using allometric equations. Canopy Height Models (CHM) were created from ALS and TLS point clouds separately and by combining them (ALS + TLS). Individual trees were extracted, and crown-level metrics were computed from the three lidar-derived datasets and used to train random forest (RF) models. The results of the individual tree detection showed successful estimation of tree count from all lidar-derived datasets, with marginal errors ranging from −4 to 3%. For all three lidar-derived datasets, the RF models accurately predicted all tree-level attributes. Overall, we found strong positive correlations between model predictions and observed values (R2 between 0.80 and 0.98), low to moderate errors (RMSE% between 4.56 and 50.99%), and low biases (between 0.03% and −2.86%). The highest R2 using ALS data was achieved predicting CBH (R2 = 0.98), while for TLS and ALS + TLS, the highest R2 was observed predicting HT, CW, and CBD (R2 = 0.94) and HT (R2 = 0.98), respectively. Relative RMSE was lowest for HT using three lidar datasets (ALS = 4.83%, TLS = 7.22%, and ALS + TLS = 4.56%). All models and datasets had similar accuracies in terms of bias (<2.0%), except for CB in ALS (−2.53%) and ALS + TLS (−2.86%), and SB in ALS + TLS data (−2.22%). These results demonstrate the usefulness of all three lidar-related methodologies and lidar modeling overall, along with lidar applicability in the estimation of crown structure and fuel attributes of longleaf pine forest ecosystems. Given that TLS measurements are less practical and more expensive, our comparison suggests that ALS measurements are still reasonable for many applications, and its usefulness is justified. This novel tree-level analysis and its respective results contribute to lidar-based planning of forest structure and fuel management. [ABSTRACT FROM AUTHOR]

The three‐dimensional (3D) physical aspects of ecosystems are intrinsically linked to ecological processes. Here, we describe structural diversity as the volumetric capacity, physical arrangement, and identity/traits of biotic components in an ecosystem. Despite being recognized in earlier ecological studies, structural diversity has been largely overlooked due to an absence of not only a theoretical foundation but also effective measurement tools. We present a framework for conceptualizing structural diversity and suggest how to facilitate its broader incorporation into ecological theory and practice. We also discuss how the interplay of genetic and environmental factors underpin structural diversity, allowing for a potentially unique synthetic approach to explain ecosystem function. A practical approach is then proposed in which scientists can test the ecological role of structural diversity at biotic–environmental interfaces, along with examples of structural diversity research and future directions for integrating structural diversity into ecological theory and management across scales. [ABSTRACT FROM AUTHOR]

Lidar‐derived forest structural diversity (FSD) metrics—including measures of forest canopy height, vegetation arrangement, canopy cover (CC), structural complexity and leaf area and density—are increasingly used to describe forest structural characteristics and can be used to infer many ecosystem functions. Despite broad adoption, the importance of spatial resolution (grain and extent) over which these structural metrics are calculated remains largely unconsidered. Often researchers will quantify FSD at the spatial grain size of the process of interest without considering the scale dependency or statistical behaviour of the FSD metric employed.We investigated the appropriate scale of inference for eight lidar‐derived spatial metrics—CC, canopy relief ratio, foliar height diversity, leaf area index, mean and median canopy height, mean outer canopy height, and rugosity (RT)‐‐representing five FSD categories—canopy arrangement, CC, canopy height, leaf area and density, and canopy complexity. Optimal scale was determined using the representative elementary area (REA) concept whereby the REA is the smallest grain size representative of the extent. Structural metrics were calculated at increasing canopy spatial grain (from 5 to 1000 m) from aerial lidar data collected at nine different forested ecosystems including sub‐boreal, broadleaf temperate, needleleaf temperate, dry tropical, woodland and savanna systems, all sites are part of the National Ecological Observatory Network within the conterminous United States. To identify the REA of each FSD metric, we used changepoint analysis via segmented or piecewise regression which identifies significant changepoints for both the magnitude and variance of each metric.We find that using a spatial grain size between 25 and 75 m sufficiently captures the REA of CC, canopy arrangement, canopy leaf area and canopy complexity metrics across multiple forest types and a grain size of 30–150 m captures the REA of canopy height metrics. However, differences were evident among forest types with higher REA necessary to characterize CC in evergreen needleleaf forests, and canopy height in deciduous broadleaved forests.These findings indicate the appropriate range of spatial grain sizes from which inferences can be drawn from this set of FSD metrics, informing the use of lidar‐derived structural metrics for research and management applications. [ABSTRACT FROM AUTHOR]

Individual tree detection (ITD) and crown delineation are two of the most relevant methods for extracting detailed and reliable forest information from LiDAR (Light Detection and Ranging) datasets. However, advanced computational skills and specialized knowledge have been normally required to extract forest information from LiDAR.The development of accessible tools for 3D forest characterization can facilitate rapid assessment by stakeholders lacking a remote sensing background, thus fostering the practical use of LiDAR datasets in forest ecology and conservation. This paper introduces the treetop application, an open‐source web‐based and R package LiDAR analysis tool for extracting forest structural information at the tree level, including cutting‐edge analyses of properties related to forest ecology and management.We provide case studies of how treetop can be used for different ecological applications, within various forest ecosystems. Specifically, treetop was employed to assess post‐hurricane disturbance in natural temperate forests, forest homogeneity in industrial forest plantations and the spatial distribution of individual trees in a tropical forest.treetop simplifies the extraction of relevant forest information for forest ecologists and conservationists who may use the tool to easily visualize tree positions and sizes, conduct complex analyses and download results including individual tree lists and figures summarizing forest structural properties. Through this open‐source approach, treetop can foster the practical use of LiDAR data among forest conservation and management stakeholders and help ecological researchers to further understand the relationships between forest structure and function. [ABSTRACT FROM AUTHOR]

Determining when a disturbance has occurred, its severity, and when the system recovered, is important to numerous questions in the aquatic sciences. This problem can be conceptualized as the timing and degree of perturbation from a typical state, and when the system returns to that typical state. We present an algorithm for detecting disturbance and recovery designed for high‐frequency time series, e.g., data produced by automated sampling devices in instrumented buoys and flux towers. The algorithm quantifies differences in the empirical cumulative distribution functions of moving windows over reference and evaluation periods, and is sensitive to changes in the mean, variance, and higher statistical moments. Tests on simulated data show it accurately identifies disturbance and recovery. Three case studies illustrate the application of our algorithm in different empirical settings. A case study on dissolved oxygen in a Florida, USA estuary following a hurricane identified the disturbance and recovery 73 d later. A case study on air temperature and net ecosystem exchange in the Florida everglades identified cold snaps coinciding with periods of reduced carbon uptake. A case study on rotifer abundance following zebra mussel invasion in the Hudson River, NY showed rotifer collapse following invasion and recovery over a decade later. Methods such as ours can improve understanding response to disturbance and facilitate comparative and synthetic study of disturbance impacts across ecosystems. [ABSTRACT FROM AUTHOR]

Forest canopy structural complexity (CSC), an emergent ecosystem property, plays a critical role in controlling ecosystem productivity, resource acquisition and resource use‐efficiency; yet is poorly characterized across broad geographic scales and is difficult to upscale from the plot to the landscape.Here, we show that the relationship between canopy height and CSC can be explained using power laws by analysing lidar‐derived CSC data from 17 temperate forest sites spanning over 17 degrees of latitude. Across three plant functional types (deciduous broadleaf, evergreen needleleaf and mixed forests), CSC increases as an approximate power law of forest height. In evergreen needleleaf forests, increases in canopy height do not result in increases in complexity to the same magnitude as in other forest types.We attribute differences in the slope of height:complexity relationships among forest types to: (a) the limited diversity of crown architectures among evergreen conifer trees relative to broadleaf species; (b) differences in how vertical forest layering develops with height; and (c) competitive exclusion by needleleaf species. We show support for these potential mechanisms with an analysis of 4,324 individual trees from across 18 National Ecological Observatory Network sites showing that crown geometry‐to‐tree height relationships differ consistently between broadleaf and needleleaf species.Power law relationships between forest height and CSC have broad implications for modelling, scaling and mapping forest structural attributes. Our results suggest that forest research and management should consider the nonlinearity in scaling between forest height and CSC and that the nature of these relationships may differ by forest type. A free Plain Language Summary can be found within the Supporting Information of this article. [ABSTRACT FROM AUTHOR]

• Honeysuckle removal caused immediate declines in canopy leaf area and changes in spatial leaf distribution that resulted in increased canopy structural complexity that continued to accrue more than a decade after removal. • The long-term structural changes were dependent on initial site conditions prior to disturbance, whereby increased structural complexity only occurred in areas with initially large honeysuckle abundance and low native tree density. • Visual assessments of honeysuckle cover may be used to rapidly quantify areas that would benefit most from honeysuckle removal due to the strong correlation with native tree canopy structure, while honeysuckle stem count and basal area are poor candidates, due to a lack of correlation with canopy structural metrics and the time consuming and labor-intensive nature of collecting this data. • In application, our results suggest that honeysuckle removal has the potential to increase the long-term canopy structural complexity and increase understory openness; but initial stand conditions should be considered during forest management aimed at restoring structural complexity of forests. Riparian forests across the continental United States are heavily invaded by Amur honeysuckle (Lonicera maackii (Rupr.)), an invasive shrub which suppresses native plants, homogenizes community structure and composition, and alters ecosystem processes. However, no studies have quantified the impacts of honeysuckle removal on forest canopy structure across the first decade of restoration. In this study we used a portable canopy LiDAR (PCL) to characterize the immediate (<1 year), short-term (1–2 years) and long-term (>10 years) impacts of honeysuckle removal on the horizontal and vertical complexity of canopy structure in 5 heavily invaded riparian forests in Ohio. Within two years of removal, forest canopies had a 40% reduction in canopy leaf volume, a greater average height of maximum canopy density, and increased aggregation of the remaining leaf area around trees than pre-removal conditions. Honeysuckle removal also prompted long-term (>10 years) increases in canopy structural complexity, but only in areas with initially high honeysuckle abundance and low native tree density. Honeysuckle cover had a much stronger influence on canopy structure than either its basal area or stem density. Our results suggest that removing honeysuckle from heavily-invaded stands can promote complex canopy structure over the long-term that is beyond the short-term accrual immediately following disturbance, but might depend on initial stand conditions. [ABSTRACT FROM AUTHOR]

• Disturbance effects on forest canopy structural complexity are poorly understood. • We synthesized the results of three forest disturbance manipulations. • Disturbance had variable effects on the temporal dynamics of structural complexity. • Moderate severity disturbance sometimes increased structural complexity. • Disturbance severity, source, and scale constrain temporal changes in complexity. The temporal dynamics of forest canopy structure are influenced by disturbances that alter vegetation quantity and distribution. While canopy structural indicators such as leaf area index (LAI), canopy cover, and canopy height have been widely studied in the context of disturbance, the post-disturbance temporal dynamics of structural complexity, which summarizes the heterogeneity of vegetation arrangement, are poorly understood. With the goal of advancing conceptual and empirical understanding of the temporal dynamics of structural complexity following disturbance, we synthesized results from three large-scale disturbance manipulation experiments at the University of Michigan Biological Station (UMBS): the 4-year Forest Resilience Threshold Experiment (FoRTE) manipulating levels of disturbance severity; the decade-long Forest Accelerated Succession Experiment (FASET), in which all early successional tree species were stem-girdled within 39 ha in the same landscape; and forest chronosequences established following clear-cut harvesting. We found that the temporal dynamics of canopy structure following disturbance were dependent upon three factors: (1) the source and severity of disturbance; (2) the spatial and temporal scales of analysis; and (3) the measure of structure assessed. Unlike vegetation area index and canopy cover, which initially decreased in response to disturbance, structural complexity measures such as canopy and top rugosity did not consistently respond to moderate levels of disturbance severity. Over multi-decadal timescales, structural complexity increased to a maximum, regardless of whether fire occurred at the time of stand establishment, but intervening low-to-moderate severity disturbance in regrown century-old forests altered trajectories of canopy rugosity. We conclude that structural complexity indicators display a more nuanced temporal and directional response to disturbance than conventional leaf area and cover indexes. Predicting what disturbance conditions modify trajectories of structural complexity remains critical to disturbance characterization and the inference of ecosystem functioning. [ABSTRACT FROM AUTHOR]

• Open-source software usage is underrepresented in forestry and forest ecology research. • We found 83 R packages with specific utility for the forest research. • We present worked examples focusing on specific forestry research areas. • Our findings were collected into an R Shiny-based metapackage, ForestryAnalysisInR. Forestry and forest ecology research potentially lags behind related fields such as ecology, biodiversity, and conservation research in the employment of open-source software solutions, specifically the R programming language. A direct comparison of the last decade of published research literature from the top 20 ecology and forestry journals shows that R is utilized in over 30% of the literature for ecology, yet in less than 10% of the forestry literature. Open-source computing environments, such as R, Python, and Julia, increase the visibility and reproducibility of scientific research and foster collaborations through the removal of proprietary software restrictions. The lag in adoption of open-source software in forestry and forest ecology could be hindering collaboration, data sharing, and reproducibility. Here we survey the available packages in the R programming language with specific utility for forest-related research. We found more than 100 available packages which we systematically categorized by research category: community analysis; dendrochronology; forest mensuration and inventory; hydrology; informatics/IoT; modeling; phenology; and remote sensing. We present worked examples for a subgroup of R software packages for each category to demonstrate their potential and utility. In these examples we used open-source data sets of our own selection. Additionally, we collected this information into an R metapackage, ForestAnalysisInR , an R Shiny-based solution that allows users to query the R packages we have identified to find those best suited for their analysis needs in a quick and efficient way. [ABSTRACT FROM AUTHOR]

Ecotones are the transition zones between ecosystems and can exhibit steep gradients in ecosystem properties controlling flows of energy and organisms between them. Ecotones are understood to be sensitive to climate and environmental changes, but the potential for spatiotemporal dynamics of ecotones to act as indicators of such changes is limited by methodological and logistical constraints. Here, we use a novel combination of satellite remote sensing and analyses of spatial synchrony to identify the tropical dry forest-rainforest ecotone in Area de Conservación Guanacaste, Costa Rica. We further examine how climate and topography influence the spatiotemporal dynamics of the ecotone, showing that ecotone is most prevalent at mid-elevations where the topography leads to moisture accumulation and that climatic moisture availability influences up and downslope interannual variation in ecotone location. We found some evidence for long-term (22 year) trends toward upslope or downslope ecotone shifts, but stronger evidence that regional climate mediates topographic controls on ecotone properties. Our findings suggest the ecotone boundary on the dry forest side may be less resilient to future precipitation reductions and that if drought frequency increases, ecotone reductions are more likely to occur along the dry forest boundary., (© 2024 The Author(s). Ecology published by Wiley Periodicals LLC on behalf of The Ecological Society of America.)