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Deep neural networks have been tremendously successful at segmenting objects in images. However, it has been shown they still have limitations on challenging problems such as the segmentation of medical images. The main reason behind this lower success resides in the reduced size of the object in the image. In this paper we overcome this limitation through a cyclic collaborative framework, CyCoSeg. The proposed framework is based on a deep active shape model (D-ASM), which provides prior information about the shape of the object, and a semantic segmentation network (SSN). These two models collaborate to reach the desired segmentation by influencing each other: SSN helps D-ASM identify relevant keypoints in the image through an Expectation Maximization formulation, while D-ASM provides a segmentation proposal that guides the SSN. This cycle is repeated until both models converge. Extensive experimental evaluation shows CyCoSeg boosts the performance of the baseline models, including several popular SSNs, while avoiding major architectural modifications. The effectiveness of our method is demonstrated on the left ventricle segmentation on two benchmark datasets, where our approach achieves one of the most competitive results in segmentation accuracy. Furthermore, its generalization is demonstrated for lungs and kidneys segmentation in CT scans. [ABSTRACT FROM AUTHOR]

Cloud and cloud shadow segmentation is one of the most important issues in remote sensing image processing. Most of the remote sensing images are very complicated. In this work, a dual-branch model composed of transformer and convolution network is proposed to extract semantic and spatial detail information of the image, respectively, to solve the problems of false detection and missed detection. To improve the model’s feature extraction, a mutual guidance module (MGM) is introduced, so that the transformer branch and the convolution branch can guide each other for feature mining. Finally, in view of the problem of rough segmentation boundary, this work uses different features extracted by the transformer branch and the convolution branch for decoding and repairs the rough segmentation boundary in the decoding part to make the segmentation boundary clearer. Experimental results on the Landsat-8, Sentinel-2 data, the public dataset high-resolution cloud cover validation dataset created by researchers at Wuhan University (HRC_WHU), and the public dataset Spatial Procedures for Automated Removal of Cloud and Shadow (SPARCS) demonstrate the effectiveness of our method and its superiority to the existing state-of-the-art cloud and cloud shadow segmentation approaches. [ABSTRACT FROM AUTHOR]

High/very-high-resolution (HR/VHR) multitemporal images are important in remote sensing to monitor the dynamics of the Earth’s surface. Unsupervised object-based image analysis provides an effective solution to analyze such images. Image semantic segmentation assigns pixel labels from meaningful object groups and has been extensively studied in the context of single-image analysis, however not explored for multitemporal one. In this article, we propose to extend supervised semantic segmentation to the unsupervised joint semantic segmentation of multitemporal images. We propose a novel method that processes multitemporal images by separately feeding to a deep network comprising of trainable convolutional layers. The training process does not involve any external label, and segmentation labels are obtained from the argmax classification of the final layer. A novel loss function is used to detect object segments from individual images as well as establish a correspondence between distinct multitemporal segments. Multitemporal semantic labels and weights of the trainable layers are jointly optimized in iterations. We tested the method on three different HR/VHR data sets from Munich, Paris, and Trento, which shows the method to be effective. We further extended the proposed joint segmentation method for change detection (CD) and tested on a VHR multisensor data set from Trento. [ABSTRACT FROM AUTHOR]

The paper presents the results from a multi-year effort to develop and validate image processing methods for selecting the best physical models based on solar image observations. The approach consists of selecting the physical models based on their agreement with coronal holes extracted from the images. Ultimately, the goal is to use physical models to predict geomagnetic storms. We decompose the problem into three subproblems: (i) coronal hole segmentation based on physical constraints, (ii) matching clusters of coronal holes between different maps, and (iii) physical map classification. For segmenting coronal holes, we develop a multi-modal method that uses segmentation maps from three different methods to initialize a level-set method that evolves the initial coronal hole segmentation to the magnetic boundary. Then, we introduce a new method based on Linear Programming for matching clusters of coronal holes. The final matching is then performed using Random Forests. The methods were carefully validated using consensus maps derived from multiple readers, manual clustering, manual map classification, and method validation for 50 maps. The proposed multi-modal segmentation method significantly outperformed SegNet, U-net, Henney-Harvey, and FCN by providing accurate boundary detection. Overall, the method gave a 95.5% map classification accuracy. [ABSTRACT FROM AUTHOR]

Curvilinear structure restoration in image processing procedures is a difficult task, which can be compounded when these structures are thin, i.e., when their smallest dimension is close to the resolution of the sensor. Many recent restoration methods involve considering a local gradient-based regularization term as prior, assuming gradient sparsity. An isotropic gradient operator is typically not suitable for thin curvilinear structures, since gradients are not sparse for these. In this paper, we propose a mixed gradient operator that combines a standard gradient in the isotropic image regions, and a directional gradient in the regions where specific orientations are likely. In particular, such information can be provided by curvilinear structure detectors (e.g., RORPO or Frangi filters). Our proposed mixed gradient operator, that can be viewed as a companion tool of such detectors, is proposed in a discrete framework and its formulation/computation holds in any dimension; in other words, it is valid in $\mathbb Z^{n}$ , ${n}\geq 1$. We show how this mixed gradient can be used to construct image priors that take edge orientation, as well as intensity, into account, and then involved in various image processing tasks while preserving curvilinear structures. The experiments carried out on 2D, 3D, real, and synthetic images illustrate the relevance of the proposed gradient, and its use in variational frameworks for both denoising and segmentation tasks. [ABSTRACT FROM AUTHOR]

A common problem in wide-baseline matching is the sparse and non-uniform distribution of correspondences when using conventional detectors, such as SIFT, SURF, FAST, A-KAZE, and MSER. In this paper, we introduce a novel segmentation-based feature detector (SFD) that produces an increased number of accurate features for wide-baseline matching. A multi-scale SFD is proposed using bilateral image decomposition to produce a large number of scale-invariant features for wide-baseline reconstruction. All input images are over-segmented into regions using any existing segmentation technique, such as Watershed, Mean-shift, and simple linear iterative clustering. Feature points are then detected at the intersection of the boundaries of three or more regions. The detected feature points are local maxima of the image function. The key advantage of feature detection based on segmentation is that it does not require global threshold setting and can, therefore, detect features throughout the image. A comprehensive evaluation demonstrates that SFD gives an increased number of features that are accurately localized and matched between wide-baseline camera views; the number of features for a given matching error increases by a factor of 3–5 compared with SIFT; feature detection and matching performance are maintained with increasing baseline between views; multi-scale SFD improves matching performance at varying scales. Application of SFD to sparse multi-view wide-baseline reconstruction demonstrates a factor of 10 increases in the number of reconstructed points with improved scene coverage compared with SIFT/MSER/A-KAZE. Evaluation against ground-truth shows that SFD produces an increased number of wide-baseline matches with a reduced error. [ABSTRACT FROM AUTHOR]

Objectness has recently become a standard step in many computer vision tasks. Among various techniques, those based on hierarchical image segmentation play a fundamental role for developments in new data modalities. In this paper, we address the problem of objectness in RGB-D images and propose a novel and effective approach, namely, hierarchical image segmentation ensemble (HISE). Different from existing image segmentation based methods that generate object segments or proposals largely by heuristics or empirical rules, HISE learns superpixel mergings with a hierarchical tree-structured ensemble, where individual merging models of the ensemble are formed by traversing different paths of the tree, and where both the merging accuracy and proposal diversity are emphasized. Furthermore, we use efficient feature measurements that support easy integration of additional clues. Extensive experiments conducted on the benchmark NYU-v2 RGB-D and SUN RGB-D data sets show the competency of our proposed method. [ABSTRACT FROM AUTHOR]

Retinal fundus photographs have been used in the diagnosis of many ocular diseases such as glaucoma, pathological myopia, age-related macular degeneration, and diabetic retinopathy. With the development of computer science, computer aided diagnosis has been developed to process and analyze the retinal images automatically. One of the challenges in the analysis is that the quality of the retinal image is often degraded. For example, a cataract in human lens will attenuate the retinal image, just as a cloudy camera lens which reduces the quality of a photograph. It often obscures the details in the retinal images and posts challenges in retinal image processing and analyzing tasks. In this paper, we approximate the degradation of the retinal images as a combination of human-lens attenuation and scattering. A novel structure-preserving guided retinal image filtering (SGRIF) is then proposed to restore images based on the attenuation and scattering model. The proposed SGRIF consists of a step of global structure transferring and a step of global edge-preserving smoothing. Our results show that the proposed SGRIF method is able to improve the contrast of retinal images, measured by histogram flatness measure, histogram spread, and variability of local luminosity. In addition, we further explored the benefits of SGRIF for subsequent retinal image processing and analyzing tasks. In the two applications of deep learning-based optic cup segmentation and sparse learning-based cup-to-disk ratio (CDR) computation, our results show that we are able to achieve more accurate optic cup segmentation and CDR measurements from images processed by SGRIF. [ABSTRACT FROM AUTHOR]

Objective: Segmentation of skin lesions is an important step in the automated computer aided diagnosis of melanoma. However, existing segmentation methods have a tendency to over- or under-segment the lesions and perform poorly when the lesions have fuzzy boundaries, low contrast with the background, inhomogeneous textures, or contain artifacts. Furthermore, the performance of these methods are heavily reliant on the appropriate tuning of a large number of parameters as well as the use of effective preprocessing techniques, such as illumination correction and hair removal. Methods: We propose to leverage fully convolutional networks (FCNs) to automatically segment the skin lesions. FCNs are a neural network architecture that achieves object detection by hierarchically combining low-level appearance information with high-level semantic information. We address the issue of FCN producing coarse segmentation boundaries for challenging skin lesions (e.g., those with fuzzy boundaries and/or low difference in the textures between the foreground and the background) through a multistage segmentation approach in which multiple FCNs learn complementary visual characteristics of different skin lesions; early stage FCNs learn coarse appearance and localization information while late-stage FCNs learn the subtle characteristics of the lesion boundaries. We also introduce a new parallel integration method to combine the complementary information derived from individual segmentation stages to achieve a final segmentation result that has accurate localization and well-defined lesion boundaries, even for the most challenging skin lesions. Results: We achieved an average Dice coefficient of 91.18% on the ISBI 2016 Skin Lesion Challenge dataset and 90.66% on the PH2 dataset. Conclusion and Significance: Our extensive experimental results on two well-established public benchmark datasets demonstrate that our method is more effective than other state-of-the-art methods for skin lesion segmentation. [ABSTRACT FROM AUTHOR]

Objective: We introduce descriptor-based segmentation that extends existing patch-based methods by combining intensities, features, and location information. Since it is unclear which image features are best suited for patch selection, we perform a broad empirical study on a multitude of different features. Methods: We extend nonlocal means segmentation by including image features and location information. We search larger windows with an efficient nearest neighbor search based on kd-trees. We compare a large number of image features. Results: The best results were obtained for entropy image features, which have not yet been used for patch-based segmentation. We further show that searching larger image regions with an approximate nearest neighbor search and location information yields a significant improvement over the bounded nearest neighbor search traditionally employed in patch-based segmentation methods. Conclusion: Features and location information significantly increase the segmentation accuracy. The best features highlight boundaries in the image. Significance: Our detailed analysis of several aspects of nonlocal means-based segmentation yields new insights about patch and neighborhood sizes together with the inclusion of location information. The presented approach advances the state-of-the-art in the segmentation of parotid glands for radiation therapy planning. [ABSTRACT FROM AUTHOR]

Automatic segmentation of the primary object in a video clip is a challenging problem as there is no prior knowledge of the primary object. Most existing techniques thus adapt an iterative approach for foreground and background appearance modeling, i.e., fix the appearance model while optimizing the segmentation and fix the segmentation while optimizing the appearance model. However, these approaches may rely on good initialization and can be easily trapped in local optimal. In addition, they are usually time consuming for analyzing videos. To address these limitations, we propose a novel and efficient appearance modeling technique for automatic primary video object segmentation in the Markov random field (MRF) framework. It embeds the appearance constraint as auxiliary nodes and edges in the MRF structure, and can optimize both the segmentation and appearance model parameters simultaneously in one graph cut. The extensive experimental evaluations validate the superiority of the proposed approach over the state-of-the-art methods, in both efficiency and effectiveness. [ABSTRACT FROM PUBLISHER]

Connected operators provide well-established solutions for digital image processing, typically in conjunction with hierarchical schemes. In graph-based frameworks, such operators basically rely on symmetric adjacency relations between pixels. In this article, we introduce a notion of directed connected operators for hierarchical image processing, by also considering non-symmetric adjacency relations. The induced image representation models are no longer partition hierarchies (i.e., trees), but directed acyclic graphs that generalize standard morphological tree structures such as component trees, binary partition trees or hierarchical watersheds. We describe how to efficiently build and handle these richer data structures, and we illustrate the versatility of the proposed framework in image filtering and image segmentation. [ABSTRACT FROM PUBLISHER]

Efficient and accurate segmentation of cellular structures in microscopic data is an essential task in medical imaging. Many state-of-the-art approaches to image segmentation use structured models whose parameters must be carefully chosen for optimal performance. A popular choice is to learn them using a large-margin framework and more specifically structured support vector machines (SSVM). Although SSVMs are appealing, they suffer from certain limitations. First, they are restricted in practice to linear kernels because the more powerful nonlinear kernels cause the learning to become prohibitively expensive. Second, they require iteratively finding the most violated constraints, which is often intractable for the loopy graphical models used in image segmentation. This requires approximation that can lead to reduced quality of learning. In this paper, we propose three novel techniques to overcome these limitations. We first introduce a method to “kernelize” the features so that a linear SSVM framework can leverage the power of nonlinear kernels without incurring much additional computational cost. Moreover, we employ a working set of constraints to increase the reliability of approximate subgradient methods and introduce a new way to select a suitable step size at each iteration. We demonstrate the strength of our approach on both 2-D and 3-D electron microscopic (EM) image data and show consistent performance improvement over state-of-the-art approaches. [ABSTRACT FROM AUTHOR]

We present two graph-based algorithms for multiclass segmentation of high-dimensional data on graphs. The algorithms use a diffuse interface model based on the Ginzburg-Landau functional, related to total variation and graph cuts. A multiclass extension is introduced using the Gibbs simplex, with the functional’s double-well potential modified to handle the multiclass case. The first algorithm minimizes the functional using a convex splitting numerical scheme. The second algorithm uses a graph adaptation of the classical numerical Merriman-Bence-Osher (MBO) scheme, which alternates between diffusion and thresholding. We demonstrate the performance of both algorithms experimentally on synthetic data, image labeling, and several benchmark data sets such as MNIST, COIL and WebKB. We also make use of fast numerical solvers for finding the eigenvectors and eigenvalues of the graph Laplacian, and take advantage of the sparsity of the matrix. Experiments indicate that the results are competitive with or better than the current state-of-the-art in multiclass graph-based segmentation algorithms for high-dimensional data. [ABSTRACT FROM PUBLISHER]