21 results on '"Wang, Panpan"'
Search Results
2. The supportive care needs survey short form 34 (SCNS-SF34): translation and cultural adaptation into the Nepali language among patients with cervical cancer in Nepal
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Dhakal, Kamala, Chen, Changying, Wang, Panpan, Mboineki, Joanes Faustine, Getu, Mikiyas Amare, Boyes, Allison, Sharma, Chandrakala, Ghimire, Bijesh Raj, Adhikari, Abish, Adhikari, Bibhav, and Shrestha, Daya Laxmi
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- 2023
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3. Assessment of supportive care needs among cervical cancer patients under treatment in Nepal: a cross-sectional study
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Dhakal, Kamala, Wang, Panpan, Mboineki, Joanes Faustine, Getu, Mikiyas Amare, and Chen, Changying
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- 2023
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4. A qualitative study of the interaction experiences between family caregivers and community nurses for disabled elderly people at home
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Guo, Panpan, Zhang, Shanfeng, Niu, Meilan, Wang, Panpan, Li, Ling, Wu, Chuqiao, Zhao, Di, Ma, Rui, and Wang, Peng
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- 2023
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5. Axial involvement in enthesitis-related arthritis: results from a single-center cohort
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Guo, Yanli, Fang, Yuying, Zhang, Tonghao, Pan, Yuting, Wang, Panpan, Fan, Zhidan, and Yu, Haiguo
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- 2023
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6. The interaction effect of transfusion history and previous stroke history on the risk of venous thromboembolism in stroke patients: a prospective cohort study
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Sun, Changqing, Wang, Rongrong, Wang, Lianke, Wang, Panpan, Qin, Ying, Zhou, Qianyu, Guo, Yuanli, Zhao, Mingyang, He, Wenqian, Hu, Bo, Yao, Zihui, Zhang, Peijia, Wu, Tiantian, Wang, Yu, and Zhang, Qiang
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- 2023
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7. Combined lifestyle factors on mortality among the elder population: evidence from a Chinese cohort study
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Sun, Changqing, Liu, Huimin, Xu, Fei, Qin, Ying, Wang, Panpan, Zhou, Qianyu, Liu, Dandan, Jia, Shanqun, and Zhang, Qiang
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- 2022
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8. Quality of life and its influencing factors among breast cancer patients at Tikur Anbessa specialised hospital, Addis Ababa, Ethiopia
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Getu, Mikiyas Amare, Chen, Changying, Wang, Panpan, Kantelhardt, Eva Johanna, and Addissie, Adamu
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- 2022
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9. The function and regulation network mechanism of circRNA in liver diseases
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Wang, Panpan, Zhang, Yunhuan, Deng, Lugang, Qu, Zhi, Guo, Peisen, Liu, Limin, Yu, Zengli, Wang, Peixi, and Liu, Nan
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- 2022
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10. De novo and comparative transcriptomic analysis explain morphological differences in Panax notoginseng taproots
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Yang, Lifang, Wang, Hanye, Wang, Panpan, Gao, Mingju, Huang, Luqi, Cui, Xiuming, and Liu, Yuan
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- 2022
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11. Relationships among mental health, social capital and life satisfaction in rural senior older adults: a structural equation model
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Wang, Xiaolei, Wang, Panpan, Wang, Peng, Cao, Meijuan, and Xu, Xianrong
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- 2022
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12. GhPME36 aggravates susceptibility to Liriomyza sativae by affecting cell wall biosynthesis in cotton leaves.
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Yang, Zheng, Wang, Menglei, Fan, Senmiao, Zhang, Zhen, Zhang, Doudou, He, Jie, Li, Tongyi, Wei, Renhui, Wang, Panpan, Dawood, Muhammad, Li, Weijie, Wang, Lin, Wang, Shaogan, Yuan, Youlu, and Shang, Haihong
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TRANSGENIC plants ,PECTINESTERASE ,DYNAMIC stability ,PLANT parasites ,GLUCOSE metabolism ,COTTON - Abstract
Background: Cotton is an important economic crop and a host of Liriomyza sativae. Pectin methylesterase (PME)-mediated pectin metabolism plays an indispensable role in multiple biological processes in planta. However, the pleiotropic functions of PME often lead to unpredictable effects on crop resistance to pests. Additionally, whether and how PME affects susceptibility to Liriomyza sativae remain unclear. Results: Here, we isolated GhPME36, which is located in the cell wall, from upland cotton (Gossypium hirsutum L.). Interestingly, the overexpression of GhPME36 in cotton caused severe susceptibility to Liriomyza sativae but increased leaf biomass in Arabidopsis. Cytological observations revealed that the cell wall was thinner with more demethylesterified pectins in GhPME36-OE cotton leaves than in WT leaves, whereas the soluble sugar content of GhPME36-OE cotton leaf cell walls was accordingly higher; both factors attracted Liriomyza sativae to feed on GhPME36-OE cotton leaves. Metabolomic analysis demonstrated that glucose was significantly differentially accumulated. Transcriptomic analysis further revealed DEGs enriched in glucose metabolic pathways when GhPME36 was overexpressed, suggesting that GhPME36 aggravates susceptibility to Liriomyza sativae by affecting both the structure and components of cell wall biosynthesis. Moreover, GhPME36 interacts with another pectin-modifying enzyme, GhC/VIF1, to maintain the dynamic stability of pectin methyl esterification. Conclusions: Taken together, our results reveal the cytological and molecular mechanisms by which GhPME36 aggravates susceptibility to Liriomyza sativae. This study broadens the knowledge of PME function and provides new insights into plant resistance to pests and the safety of genetically modified plants. [ABSTRACT FROM AUTHOR]
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- 2024
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13. The hidden costs of informal caregiving: a concept analysis.
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Gu, Jinjin, Sun, Xiang, Shi, Yan, Wang, Shanshan, Wang, Panpan, Liu, Lamei, Liu, Yihan, and Wang, Peng
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MEDICAL information storage & retrieval systems ,PATIENT compliance ,TERMS & phrases ,COMPUTER software ,RESEARCH funding ,HUMANITY ,COST analysis ,CINAHL database ,HEALTH ,DECISION making ,CAREGIVERS ,MEDLINE ,MEDICAL databases ,SOCIAL skills ,QUALITY of life ,ECONOMIC impact ,CONCEPTUAL structures ,CONCEPTS ,ONLINE information services ,TIME ,VOCATIONAL guidance ,WELL-being - Abstract
Background: "The hidden costs of informal caregiving" is an interdisciplinary concept. While caregivers make a significant contribution to the process of caregiving, they sacrifice their leisure time, and incur risks of dropping out of the job, impaired mental and physical health, and decreased well-being within the context of caregiving. Those invisible sacrifices are often overlooked and described as hidden costs of informal caregiving. However, the conceptualisation of hidden costs of informal caregiving has not yet been clarified and scientifically assessed. The research aimed to clarify the concept of hidden costs of informal caregiving and develop an operational definition. Methods: Walker and Avant's concept analysis was conducted. Databases of CBM, CNKI, WanFang, VIP, PubMed, Embase, CINAHL, Web of Science, MEDLINE, Cochrane Library, Econlit, CINAHL and ProQuest were searched with the term "hidden costs of informal caregiving". Information about the uses of the concept, defining attributes, model cases, antecedents, consequences and empirical referents of hidden costs of informal caregiving was extracted and synthesized. Results: A total of 25 articles were included. The six defining attributes of hidden costs of informal caregiving were identified as including "undertaken by informal caregivers", "the time costs of caregiving", "costs of career development" "physical well-being costs", "mental well-being costs" and "social relationship costs". Personal characteristics of the caregivers and care recipients, along with caregiving attributes, were among the antecedents. The consequences of hidden costs of informal caregiving resulted in negative influences which included poor quality of life, life-altering decisions, options for the type of care, some degree of economic hardship, decreased compliance with treatment plans and monetary value informal caregivers are willing to pay to be replaced. Conclusion: This concept analysis decisively illuminated the hitherto nebulous concept and expanded the contents of hidden costs of informal caregiving, which will foster a deeper appreciation of the invisible cost of caregivers. Moreover, it will provide a reference for the study of the hidden costs of informal caregiving in future, contribute to the development of assessment tools and theoretical models of hidden costs of informal caregiving, and create a basis for designing an evidence-based care program. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Pathological characteristics of axons and alterations of proteomic and lipidomic profiles in midbrain dopaminergic neurodegeneration induced by WDR45-deficiency.
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Wang, Panpan, Shao, Yaping, Al-Nusaif, Murad, Zhang, Jun, Yang, Huijia, Yang, Yuting, Kim, Kunhyok, Li, Song, Liu, Cong, Cai, Huaibin, and Le, Weidong
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PATHOLOGICAL physiology , *LIPID metabolism , *TRANSMISSION electron microscopy , *ENDOPLASMIC reticulum , *TRICARBOXYLIC acids - Abstract
Background: Although WD repeat domain 45 (WDR45) mutations have been linked to β -propeller protein-associated neurodegeneration (BPAN), the precise molecular and cellular mechanisms behind this disease remain elusive. This study aims to shed light on the impacts of WDR45-deficiency on neurodegeneration, specifically axonal degeneration, within the midbrain dopaminergic (DAergic) system. We hope to better understand the disease process by examining pathological and molecular alterations, especially within the DAergic system. Methods: To investigate the impacts of WDR45 dysfunction on mouse behaviors and DAergic neurons, we developed a mouse model in which WDR45 was conditionally knocked out in the midbrain DAergic neurons (WDR45cKO). Through a longitudinal study, we assessed alterations in the mouse behaviors using open field, rotarod, Y-maze, and 3-chamber social approach tests. We utilized a combination of immunofluorescence staining and transmission electron microscopy to examine the pathological changes in DAergic neuron soma and axons. Additionally, we performed proteomic and lipidomic analyses of the striatum from young and aged mice to identify the molecules and processes potentially involved in the striatal pathology during aging. Further more, primary midbrain neuronal culture was employed to explore the molecular mechanisms leading to axonal degeneration. Results: Our study of WDR45cKO mice revealed a range of deficits, including impaired motor function, emotional instability, and memory loss, coinciding with the profound reduction of midbrain DAergic neurons. The neuronal loss, we observed massive axonal enlargements in the dorsal and ventral striatum. These enlargements were characterized by the accumulation of extensively fragmented tubular endoplasmic reticulum (ER), a hallmark of axonal degeneration. Proteomic analysis of the striatum showed that the differentially expressed proteins were enriched in metabolic processes. The carbohydrate metabolic and protein catabolic processes appeared earlier, and amino acid, lipid, and tricarboxylic acid metabolisms were increased during aging. Of note, we observed a tremendous increase in the expression of lysophosphatidylcholine acyltransferase 1 (Lpcat1) that regulates phospholipid metabolism, specifically in the conversion of lysophosphatidylcholine (LPC) to phosphatidylcholine (PC) in the presence of acyl-CoA. The lipidomic results consistently suggested that differential lipids were concentrated on PC and LPC. Axonal degeneration was effectively ameliorated by interfering Lpcat1 expression in primary cultured WDR45-deficient DAergic neurons, proving that Lpcat1 and its regulated lipid metabolism, especially PC and LPC metabolism, participate in controlling the axonal degeneration induced by WDR45 deficits. Conclusions: In this study, we uncovered the molecular mechanisms underlying the contribution of WDR45 deficiency to axonal degeneration, which involves complex relationships between phospholipid metabolism, autophagy, and tubular ER. These findings greatly advance our understanding of the fundamental molecular mechanisms driving axonal degeneration and may provide a foundation for developing novel mechanistically based therapeutic interventions for BPAN and other neurodegenerative diseases. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Existing psychological supportive care interventions for cervical cancer patients: a systematic review and meta-analysis.
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Dhakal, Kamala, Chen, Changying, Wang, Panpan, Mboineki, Joanes Faustine, and Adhikari, Bibhav
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CERVICAL cancer ,CANCER patient care ,CANCER patients ,PSYCHOTHERAPY ,FAMILY nursing ,PSYCHOLOGICAL well-being ,PSYCHOLOGICAL factors - Abstract
Cervical cancer patients commonly experience psychological supportive care needs, necessitating diverse interventions to enhance psychological well-being and alleviate physical symptoms. This systematic review, covering English-published articles from January 1999 to April 2023, assessed the impact of psychological supportive care interventions on anxiety and depression. Twenty-Six studies, including 11,638 patients, were analyzed, comprising randomized controlled trials; quasi-experimental, and pre-post-test designs from PubMed; Science Direct; Wiley online library; Google Scholar; Cochrane Library; and JSTOR. The extraction of data was done by two independent authors and a third independent author checked the data extraction. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA), 2020 statement was adopted. The population, intervention, comparator, and outcomes (PICO) search strategy was applied. Effective Public Health Practice Project (EPHPP) tool was used to assess the quality of selected articles. Various interventions, such as psychological nursing, exercise, counselling, psycho-curative approaches, peer and family education, psychotherapy, and medication, were identified. Two studies incorporated homework sessions, predominantly administered by nursing staff. Self-Rating Depression Scale (SDS) and Self-Rating Anxiety Scale (SAS) were commonly used instruments. Statistical analysis revealed a significant difference in anxiety and depression scores between treatment and control groups (p < 0.005) post-intervention across all studies. A subsequent meta-analysis of eight homogeneous studies, utilizing a random-effects model, showed a moderate-to-high overall effect size (1.35, 95% CI: 0.75 to 1.94), indicating a statistically significant positive impact. Various studies exhibited variability in effect sizes ranging from low to high. While the meta-analysis included 936 participants, the forest plot visually represents individual study effect sizes and the combined effect size. Preliminary evidence supports the positive impact of psychological supportive care interventions on cervical cancer outcomes, urging further research, especially exploring long-term effects and employing rigorous study designs. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Single center clinical analysis of macrophage activation syndrome complicating juvenile rheumatic diseases.
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Huang, Shuoyin, Liu, Yingying, Yan, Wu, Zhang, Tonghao, Wang, Panpan, Zhu, Meifang, Zhang, Xiaohua, Zhou, Peng, Fan, Zhidan, and Yu, Haiguo
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MACROPHAGE activation syndrome ,JUVENILE diseases ,RHEUMATISM ,BLOOD sedimentation ,JUVENILE idiopathic arthritis ,RHEUMATIC fever ,MUCOCUTANEOUS lymph node syndrome - Abstract
Background: Macrophage activation syndrome (MAS), an example of secondary hemophagocytic lymphohistiocytosis, is a potentially fatal complication of rheumatic diseases. We aimed to study the clinical and laboratory characteristics, treatment schemes, and outcomes of different rheumatic disorders associated with MAS in children. Early warning indicators of MAS have also been investigated to enable clinicians to make a prompt and accurate diagnosis. Methods: Fifty-five patients with rheumatic diseases complicated by MAS were enrolled between January 2017 and December 2022. Clinical and laboratory data were collected before disease onset, at diagnosis, and after treatment with MAS, and data were compared between patients with systemic juvenile idiopathic arthritis (sJIA), Kawasaki disease (KD), and systemic lupus erythematosus (SLE). A random forest model was established to show the importance score of each variable with a significant difference. Results: Most (81.8%) instances of MAS occurred during the initial diagnosis of the underlying disease. Compared to the active stage of sJIA, the platelet count, erythrocyte sedimentation rate, and fibrinogen level in sJIA-MAS were significantly decreased, whereas ferritin, ferritin/erythrocyte sedimentation rate, aspartate aminotransferase, alanine aminotransferase, lactate dehydrogenase, and D-dimer levels were significantly increased. Ferritin level, ferritin/erythrocyte sedimentation rate, and platelet count had the greatest predictive value for sJIA-MAS. The level of IL-18 in the sJIA-MAS group was significantly higher than in the active sJIA group, whereas IL-6 levels were significantly lower. Most patients with MAS were treated with methylprednisolone pulse combined with cyclosporine, and no deaths occurred. Conclusions: Thrombocytopenia, ferritin levels, the ferritin/erythrocyte sedimentation rate, and elevated aspartate aminotransferase levels can predict the occurrence of MAS in patients with sJIA. Additionally, our analysis indicates that IL-18 plays an important role in the pathogenesis of MAS in sJIA-MAS. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Health-related quality of life and associated factors in patients with myocardial infarction after returning to work: a cross-sectional study
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Du, Ruofei, Wang, Panpan, Ma, Lixia, Larcher, Leon M., Wang, Tao, and Chen, Changying
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- 2020
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18. The relationship between social frailty and loneliness in community-dwelling older adults: a cross-sectional study.
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Li, Zhixiao, Gu, Jinjin, Li, Peiling, Hu, Jiaqi, Wang, Shanshan, Wang, Panpan, Zhou, Lin, Yun, Yi, Shi, Yan, and Wang, Peng
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OLDER people ,FRAILTY ,LONELINESS ,STRUCTURAL equation modeling ,PEARSON correlation (Statistics) - Abstract
Background: Social frailty (SF) is associated with multiple adverse health outcomes, yet there has been an inadequate focus on social frailty. The convoy model portrays the social networks through the perspective of the life course, thus providing a framework to explain the occurrence of social frailty. This study aimd to figure out the prevalence of social frailty and loneliness among community-dwelling older adults and to explore their correlations based on convoy model. Methods: This was a cross-sectional study, and 295 older adults from 10 communities of Zhengzhou in Henan Province participated in the study. Social frailty and loneliness were assessed separately with the Social Frailty Scale and University of California at Los Angeles-Loneliness Scale. The scores of social frailty of the older adults in different characteristic communities were compared by independent sample t-test and single factor analysis of variance. The influencing factors of social frailty were analysed by multiple stepwise linear regression and the structural equation model. The correlation between social frailty and loneliness was analysed by Pearson correlation analysis. Results: The total scores of social frailty and loneliness of the older adults in the community were (2.09 ± 1.53) and (43.19 ± 8.91), respectively. There was a moderate positive correlation between social frailty and loneliness (r = 0.621, P < 0.01). The results of multiple stepwise linear regression analysis showed that age, living styles, balance of payments, and loneliness were the main influencing factors of the social frailty of older adults in the community (F = 27.180, P < 0.001). The structural equation model of social frailty fitted well (χ
2 = 47.292, df = 26, χ2 /df = 1.819, P = 0.007; RMSEA = 0.053, 95%CI (0.028, 0.076), P = 0.359; GFI = 0.971; AGFI = 0.939; NFI = 0.904; IFI = 0.955; TLI = 0.918; CFI = 0.953; SRMR = 0.0466). Conclusions: The convoy model had certain applicability in explanation of the relationship between loneliness and social frailty among older adults in community. The incidence of social frailty among the older adults in the community was high, and loneliness was at a medium level. It is necessary to strengthen the intervention of social frailty and loneliness of the older adults in the community, improve the quality of life of the older adults, and promote the development of healthy aging. [ABSTRACT FROM AUTHOR]- Published
- 2024
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19. Effectiveness of typodont, quail egg and virtual simulation for ultrasonic periodontal scaling teaching among pre-clinical students: a randomized trial.
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Fu, Jiarun, Lao, Zhentao, Gao, Li, Wu, Shiwen, Huang, Xin, Zhao, Chuanjiang, and Wang, Panpan
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PERIODONTAL disease treatment ,EGGS ,NATIONAL competency-based educational tests ,TEACHING methods ,DENTAL calculus ,ANALYSIS of variance ,VIRTUAL reality ,MEDICAL students ,ONE-way analysis of variance ,SIMULATION methods in education ,PERIODONTAL disease ,DENTAL scaling ,DENTAL casting ,RANDOMIZED controlled trials ,PRE-tests & post-tests ,COMPARATIVE studies ,T-test (Statistics) ,QUESTIONNAIRES ,DESCRIPTIVE statistics ,GINGIVAL hyperplasia ,RESEARCH funding ,STATISTICAL sampling ,EDUCATIONAL outcomes - Abstract
Background: This study aimed to compare the efficacy of three different techniques, namely virtual simulation technology (VS), traditional pathological typodont (TT), and quail egg (QE), in pre-clinical training of periodontal ultrasonic scaling. It also aimed to propose an integrated teaching approach for ultrasonic scaling teaching. Methods: This single-blind randomized multi-arm trial enrolled 108 fourth-year students from Guanghua School of Stomatology at Sun Yat-sen University. The participants were randomly, evenly assigned to VS, TT, or QE group. First, the participants received theoretical review on ultrasonic scaling and demonstrative teaching. Then in the 90-minute operation training by group, students used traditional typodont equipped in head-simulators, raw quail eggs, or scaling module of the UniDental VS system respectively. Then all participants practiced on pathological models for 30 min. In the final operation examination, participants were instructed to remove the supra- and sub-gingival calculi pre-set on designated teeth by ultrasonic scalers within 30 min. Their performances were evaluated by residual calculus rate and a multi-perspective scoring scale. After the examination, questionnaires were provided to assess the teaching effects of each method and the fidelity of VS. Statistical analysis was carried out using one-way, two-way ANOVA, and multiple t-test. Results: Students in VS group had significant higher total test scores than QE group (87.89 ± 6.81, 83.53 ± 8.14) and TT group (85.03 ± 6.81). VS group scored higher in several dimensional comparisons with the other two groups, especially in difficult situations. QE group had higher scores particularly in force application and supra-gingival scaling. TT group scored the highest in pivot stability practice and body position training. Students gave higher scores when assessing the fidelity of VS than experienced teachers. Conclusion: The study highlights the importance of specialized pre-clinical training on ultrasonic scaling for dental students. The methods adopted in current study (VS, TT and QE) each offered unique advantages in education, which can be combined to create an integrative teaching procedure. This procedure aims to provide an effective, advisable and normative pre-clinical training procedure for ultrasonic scaling. By utilizing the strengths of each method, dental educators can deliver high-quality training and ensure that students are well-prepared for clinical practice. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Comparative analysis of transcriptomic data shows the effects of multiple evolutionary selection processes on codon usage in Marsupenaeus japonicus and Marsupenaeus pulchricaudatus.
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Wang, Panpan, Mao, Yong, Su, Yongquan, and Wang, Jun
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PENAEUS japonicus , *DATA analysis , *SHRIMPS , *COMPARATIVE studies , *GENE expression , *GENETIC code - Abstract
Background: Kuruma shrimp, a major commercial shrimp species in the world, has two cryptic or sibling species, Marsupenaeus japonicus and Marsupenaeus pulchricaudatus. Codon usage analysis would contribute to our understanding of the genetic and evolutionary characteristics of the two Marsupenaeus species. In this study, we analyzed codon usage and related indices using coding sequences (CDSs) from RNA-seq data. Results: Using CodonW 1.4.2 software, we performed the codon bias analysis of transcriptomes obtained from hepatopancreas tissues, which indicated weak codon bias. Almost all parameters had similar correlations for both species. The gene expression level (FPKM) was negatively correlated with A/T3s. We determined 12 and 14 optimal codons for M. japonicus and M. pulchricaudatus, respectively, and all optimal codons have a C/G-ending. The two Marsupenaeus species had different usage frequencies of codon pairs, which contributed to further analysis of transcriptional differences between them. Orthologous genes that underwent positive selection (ω > 1) had a higher correlation coefficient than that of experienced purifying selection (ω < 1). Parity Rule 2 (PR2) and effective number of codons (ENc) plot analysis showed that the codon usage patterns of both species were influenced by both mutations and selection. Moreover, the average observed ENc value was lower than the expected value for both species, suggesting that factors other than GC may play roles in these phenomena. The results of multispecies clustering based on codon preference were consistent with traditional classification. Conclusions: This study provides a relatively comprehensive understanding of the correlations among codon usage bias, gene expression, and selection pressures of CDSs for M. japonicus and M. pulchricaudatus. The genetic evolution was driven by mutations and selection pressure. Moreover, the results point out new insights into the specificities and evolutionary characteristics of the two Marsupenaeus species. [ABSTRACT FROM AUTHOR]
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- 2021
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21. A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data.
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Wang P, Rahman M, Jin L, and Xiong M
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- Algorithms, Computer Simulation, Genomics methods, Genotype, High-Throughput Nucleotide Sequencing, Polymorphism, Single Nucleotide, Quantitative Trait, Heritable, Genetic Association Studies methods, Genetic Pleiotropy, Genetic Predisposition to Disease, Models, Genetic, Models, Statistical, Phenotype
- Abstract
Background: The widely used genetic pleiotropic analyses of multiple phenotypes are often designed for examining the relationship between common variants and a few phenotypes. They are not suited for both high dimensional phenotypes and high dimensional genotype (next-generation sequencing) data. To overcome limitations of the traditional genetic pleiotropic analysis of multiple phenotypes, we develop sparse structural equation models (SEMs) as a general framework for a new paradigm of genetic analysis of multiple phenotypes. To incorporate both common and rare variants into the analysis, we extend the traditional multivariate SEMs to sparse functional SEMs. To deal with high dimensional phenotype and genotype data, we employ functional data analysis and the alternative direction methods of multiplier (ADMM) techniques to reduce data dimension and improve computational efficiency., Results: Using large scale simulations we showed that the proposed methods have higher power to detect true causal genetic pleiotropic structure than other existing methods. Simulations also demonstrate that the gene-based pleiotropic analysis has higher power than the single variant-based pleiotropic analysis. The proposed method is applied to exome sequence data from the NHLBI's Exome Sequencing Project (ESP) with 11 phenotypes, which identifies a network with 137 genes connected to 11 phenotypes and 341 edges. Among them, 114 genes showed pleiotropic genetic effects and 45 genes were reported to be associated with phenotypes in the analysis or other cardiovascular disease (CVD) related phenotypes in the literature., Conclusions: Our proposed sparse functional SEMs can incorporate both common and rare variants into the analysis and the ADMM algorithm can efficiently solve the penalized SEMs. Using this model we can jointly infer genetic architecture and casual phenotype network structure, and decompose the genetic effect into direct, indirect and total effect. Using large scale simulations we showed that the proposed methods have higher power to detect true causal genetic pleiotropic structure than other existing methods.
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- 2016
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