Cell autophagy is a homeostatic mechanism that exists in most eukaryotic cells, and it is known as a kind of highly conservative process. Autophagy can degrade intracellular proteins and organelles in lysosomes, and the main targets are needless biological macromolecules, damaged cytoskeleton, aging organelles, and so on. Therefore, autophagy is not only a way of cell death, but also a self-protection mechanism, just like apoptosis and senescence, and it participates in a lot of physiological processes, including the development and the growth of an organism. The characterization of hepatic autophagy being reported over years has revealed that lysosome-mediated degradation is important not only for the maintenance of liver homeostasis. In fact, the functions of autophagy involve far beyond the elimination of damaged cellular components and protein quality control, it also plays an important role in antigen presentation and participation in the response of stressors, especially in immune inflammatory response and organ transplantation. In this review, we focus on the role of autophagy in the liver immune tolerance and the regulatory mechanism in order to further understand the important effect and potential therapeutic value of autophagy in immunity in liver transplantation. DOI: 10.11855/j.issn.0577-7402.2014.06.16