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Objective: Using single cell sequencing to analyze the characteristics of the immune repertoire of SARS-CoV-2 patients at different infection stages, and to explore the possible pathogenesis. Methods: Obtaining data in the NCBI database, and healthy control, progression and convalescence groups were set up. Analysis of single cell sequencing data by RStudio, Origin, Hipliot and Excel software. Results: TCR plays an important role in antigen recognition and virus clearance. Characteristics of the three immune repertoires are very different. The number of clones exceeded 26.92%. The length distribution of α chain CDR3 was concentrated on 14 amino acids, while β-chain was concentrated on 15 amino acids. The frequency of gene fragments in V and J regions were different, and the frequency of TRAV13-1, TRAJ20, TRBV20-1 and TRBJ2-1 were statistically significant (P<0.05). Further V-J gene combination analysis showed that there were significant differences in the frequency of single chain V-J between the control group and the progression group, the control group and the rehabilitation group (P<0.05). The highest frequency of αβ double chain V-J in the control group was TRAV19-J34-TRBV4-1-J2-1, the highest frequency of αβ double-stranded V-J in the progression group was TRAV12-1-J30-TRBV19-1-J2-1, and the highest frequency of αβ double chain V-J in the convalescence group was TRAV12-2-J52-TRBV7-9-J1-5. Conclusion: This study analyzes the global characteristics of T cells in the immune repertoire, which is helpful to understand the pathogenesis of SARS-CoV-2 patients, timely and effective treatment of patients in the early stages of infection. [ABSTRACT FROM AUTHOR]