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1. Natural History of Aerosol-Induced Ebola Virus Disease in Rhesus Macaques

Author

Downs, Isaac, primary, Johnson, Joshua C., additional, Rossi, Franco, additional, Dyer, David, additional, Saunders, David L., additional, Twenhafel, Nancy A., additional, Esham, Heather L., additional, Pratt, William D., additional, Trefry, John, additional, Zumbrun, Elizabeth, additional, Facemire, Paul R., additional, Johnston, Sara C., additional, Tompkins, Erin L., additional, Jansen, Nathan K., additional, Honko, Anna, additional, and Cardile, Anthony P., additional

Published
2021
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2. Natural History of Aerosol Induced Lassa Fever in Non-Human Primates

Author

Downs, Isaac L., primary, Shaia, Carl I., additional, Zeng, Xiankun, additional, Johnson, Joshua C., additional, Hensley, Lisa, additional, Saunders, David L., additional, Rossi, Franco, additional, Cashman, Kathleen A., additional, Esham, Heather L., additional, Gregory, Melissa K., additional, Pratt, William D., additional, Trefry, John C., additional, Everson, Kyle A., additional, Larcom, Charles B., additional, Okwesili, Arthur C., additional, Cardile, Anthony P., additional, and Honko, Anna, additional

Published
2020
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3. Ebola Virus Infections in Nonhuman Primates Are Temporally Influenced by Glycoprotein Poly-U Editing Site Populations in the Exposure Material

Author

Trefry, John, primary, Wollen, Suzanne, additional, Nasar, Farooq, additional, Shamblin, Joshua, additional, Kern, Steven, additional, Bearss, Jeremy, additional, Jefferson, Michelle, additional, Chance, Taylor, additional, Kugelman, Jeffery, additional, Ladner, Jason, additional, Honko, Anna, additional, Kobs, Dean, additional, Wending, Morgan, additional, Sabourin, Carol, additional, Pratt, William, additional, Palacios, Gustavo, additional, and Pitt, M., additional

Published
2015
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4. Euthanasia Assessment in Ebola Virus Infected Nonhuman Primates

Author

Warren, Travis, primary, Trefry, John, additional, Marko, Shannon, additional, Chance, Taylor, additional, Wells, Jay, additional, Pratt, William, additional, Johnson, Joshua, additional, Mucker, Eric, additional, Norris, Sarah, additional, Chappell, Mark, additional, Dye, John, additional, and Honko, Anna, additional

Published
2014
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5. Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

Author

Kuhn, Jens, primary, Andersen, Kristian, additional, Bào, Yīmíng, additional, Bavari, Sina, additional, Becker, Stephan, additional, Bennett, Richard, additional, Bergman, Nicholas, additional, Blinkova, Olga, additional, Bradfute, Steven, additional, Brister, J., additional, Bukreyev, Alexander, additional, Chandran, Kartik, additional, Chepurnov, Alexander, additional, Davey, Robert, additional, Dietzgen, Ralf, additional, Doggett, Norman, additional, Dolnik, Olga, additional, Dye, John, additional, Enterlein, Sven, additional, Fenimore, Paul, additional, Formenty, Pierre, additional, Freiberg, Alexander, additional, Garry, Robert, additional, Garza, Nicole, additional, Gire, Stephen, additional, Gonzalez, Jean-Paul, additional, Griffiths, Anthony, additional, Happi, Christian, additional, Hensley, Lisa, additional, Herbert, Andrew, additional, Hevey, Michael, additional, Hoenen, Thomas, additional, Honko, Anna, additional, Ignatyev, Georgy, additional, Jahrling, Peter, additional, Johnson, Joshua, additional, Johnson, Karl, additional, Kindrachuk, Jason, additional, Klenk, Hans-Dieter, additional, Kobinger, Gary, additional, Kochel, Tadeusz, additional, Lackemeyer, Matthew, additional, Lackner, Daniel, additional, Leroy, Eric, additional, Lever, Mark, additional, Mühlberger, Elke, additional, Netesov, Sergey, additional, Olinger, Gene, additional, Omilabu, Sunday, additional, Palacios, Gustavo, additional, Panchal, Rekha, additional, Park, Daniel, additional, Patterson, Jean, additional, Paweska, Janusz, additional, Peters, Clarence, additional, Pettitt, James, additional, Pitt, Louise, additional, Radoshitzky, Sheli, additional, Ryabchikova, Elena, additional, Saphire, Erica, additional, Sabeti, Pardis, additional, Sealfon, Rachel, additional, Shestopalov, Aleksandr, additional, Smither, Sophie, additional, Sullivan, Nancy, additional, Swanepoel, Robert, additional, Takada, Ayato, additional, Towner, Jonathan, additional, van der Groen, Guido, additional, Volchkov, Viktor, additional, Volchkova, Valentina, additional, Wahl-Jensen, Victoria, additional, Warren, Travis, additional, Warfield, Kelly, additional, Weidmann, Manfred, additional, and Nichol, Stuart, additional

Published
2014
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7. Low-Input, High-Resolution 5' Terminal Filovirus RNA Sequencing with ViBE-Seq.

Author

Ross SJ, Hume AJ, Olejnik J, Turcinovic J, Honko AN, McKay LGA, Connor JH, Griffiths A, Mühlberger E, and Cifuentes D

Subjects
Marburgvirus genetics, Humans, Animals, RNA, Viral genetics, High-Throughput Nucleotide Sequencing methods, Genome, Viral, Ebolavirus genetics, Sequence Analysis, RNA methods, Filoviridae genetics
Abstract

Although next-generation sequencing (NGS) has been instrumental in determining the genomic sequences of emerging RNA viruses, de novo sequence determination often lacks sufficient coverage of the 5' and 3' ends of the viral genomes. Since the genome ends of RNA viruses contain the transcription and genome replication promoters that are essential for viral propagation, a lack of terminal sequence information hinders the efforts to study the replication and transcription mechanisms of emerging and re-emerging viruses. To circumvent this, we have developed a novel method termed ViBE-Seq (Viral Bona Fide End Sequencing) for the high-resolution sequencing of filoviral genome ends using a simple yet robust protocol with high fidelity. This technique allows for sequence determination of the 5' end of viral RNA genomes and mRNAs with as little as 50 ng of total RNA. Using the Ebola virus and Marburg virus as prototypes for highly pathogenic, re-emerging viruses, we show that ViBE-Seq is a reliable technique for rapid and accurate 5' end sequencing of filovirus RNA sourced from virions, infected cells, and tissue obtained from infected animals. We also show that ViBE-Seq can be used to determine whether distinct reverse transcriptases have terminal deoxynucleotidyl transferase activity. Overall, ViBE-Seq will facilitate the access to complete sequences of emerging viruses.

Published
2024
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