1. M-F noncoding region sequences of H1 genotype measles virus provide higher resolution for virus transmission tracing.
- Author
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Song, Jinhua, Zhu, Zhen, Wang, Huiling, Hu, Manli, Xia, Baicheng, and Zhang, Yan
- Subjects
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MEASLES virus , *RUBELLA , *GENOTYPES , *GENETIC variation , *EXTRACELLULAR matrix proteins , *GENE fusion - Abstract
As countries and regions move toward measles elimination, extended sequence window including noncoding region located between the matrix and fusion protein genes (M − F NCR) was considered to be used in molecular surveillance. The molecular resolution of M − F NCR was evaluated with 192 genotype H1 strains circulating during 2011–2018 in China. Phylogenetic analyses of the N450 and M − F NCR targets indicated that both two targets could confirm epi-linked outbreak, while M − F NCR target could further improve resolution of the molecular characterization: (1) it could differentiate the strains with identical N450 circulated in one county within one month of disease onset; (2) different transmission chains could be distinguished for strains with identical N450; (3) better spatial-temporal consistency with topology could be provided among sporadic cases with inconsistent N450. Accordingly, M − F NCR could be used to complement the information from N450 to address the specific questions in tracking the virus transmission chains. • The limited genetic variation of N450 hampers its effective use in surveillance, especially during the elimination stage. • Compared with N450, M − F NCR even provided higher resolution in virus strains from outbreak and sporadic cases. • M − F NCR could be used to complement the information from N450 in molecular surveillance for virus transmission tracking. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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