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The sequences of the 5′ terminal 1140 and 3′ terminal 1546 nt of tomato ringspot virus (TomRSV) RNA1 have been determined. These sequences share a high degree of nucleotide sequence similarity with the previously determined TomRSV RNA2 sequence. Eighty-eight percent of the 5' terminal 907 nt of TomRSV RNA1 and RNA2 contain identical nucleotide residues; the first 459 nt are identical at all positions, whereas the next 447 nt are identical at only 75.8% of the nucleotide positions. The region of similarity includes not only the 5' nontranslated leader but also sequence probably encoding polyproteins. The 3′ terminal 1533 nt of TomRSV RNA1 and RNA2 are identical and are noncoding. The sequences common to RNA1 and RNA2 account for almost 35% of the total genomic sequence. It is possible that the similar sequences at both ends of TomRSV RNA1 and RNA2 are a result of recombination between these two genomic RNA components.

Values of the equilibrium dissociation constant and the number of attachment sites for the binding of radiolabeled F AB fragments prepared from four monoclonal antibodies to southern bean mosaic virus have been determined. Monoclonal antibodies B6 and B10 produced against the bean type strain of southern bean mosaic virus (SBMV-B) and 1C4 and 1D6 produced against the cowpea type strain (SBMV-C) were more reactive with the untreated virus than with EDTA-swollen particles. B6 and B10 reacted with 180 and 90 sites, respectively, on the SBMV-B particle and were not reactive with SBMV-C. Antibody 1D6 reacted with 180 sites on both SBMV-B and SBMV-C, whereas 1C4 bound to 180 sites on SBMV-C and 60 sites on SBMV-B. The equilibrium dissociation constants for B10, 1C4, and 1D6 were similar but antibody B6 bound with an 8- to 10-fold lower affinity. Solid phase competitive antibody inhibition analysis showed that 1C4 and 1D6 were mutually inhibitory and that these antibodies also inhibited the binding of B6 and B10. Antibody B6 partially inhibited the binding of 1D6 but did not affect 1C4 or B10 binding. No inhibition of B6, 1C4, or 1D6 binding was observed when B10 was the competing antibody. Possible sites of reaction of these monoclonal antibodies on the SBMV particle are discussed.

The reactivity of six monoclonal antibodies with native southern bean mosaic virus particles, swollen virus, swollen virus contracted by divalent cations or by pH adjustment to 5.0, and virus coat protein at pH 7.5 and 5.0 were assessed by antigen inhibition enzyme-linked immunosorbent assays. Clones B4, B7, and B11 did not react with native virus but were inhibited by low levels of all nonnative virus antigens. B6 had a high reactivity only with the native virus. B5 and B10 reacted equally with native virus and swollen virus contracted by Ca2+ or by pH adjustment, but reacted only weakly with swollen virus or swollen virus contracted by Mg2+. B5 reacted with viral protein at pH 5.0 and weakly with coat protein at pH 7.5, whereas B10 did not react with protein at pH 7.5 and had only limited reactivity with viral protein at pH 5.0. The reactivity of B5 and B10 with swollen virus increased as the pH was gradually decreased between 7.3 and 6.5. Similarly, their reactivity with swollen-contracted virus decreased as the pH was increased within the same range. Reactivity versus pH plots of these two transition forms showed hysteresis with B10 but did not with B5.

Southern bean mosaic virus (SBMV) was swollen by treatment with EDTA at pH 7.5 and dissociated into RNA and protein in 1 M NaCl. Aliquots of this preparation were diluted with appropriate buffers to obtain samples in varying concentrations of NaCl, and components of these samples were sedimented through sucrose solutions and dissolved in 0.01 M Tris-HCI buffer, pH 7.5. The protein content and sedimentation properties of components in these preparations were determined. When the NaCl molarity in the treatment exceeded 0.6 M the preparations contained RNA with approximately six protein subunits per SBMV RNA molecule. The protein content of the preparations increased from 30 protein subunits per RNA molecule to 145 protein subunits per RNA molecule as the NaCl molarity used in the treatment was decreased from 0.5 to 0.1 M. The positions of sedimentation of components in these preparations in density gradient centrifugation were intermediate between those of RNA and EDTA-swollen virus. The sedimentation rate of these assembled components increased as the NaCl molarity used in the treatment was decreased. Similar components were assembled when preparations of RNA and protein dissociated from SBMV by dialysis in neutral buffers containing EDTA and 1 M NaCl were diluted to lower NaCl molarities. When SBMV was swollen by treatment with EDTA and dissociated in various concentrations of NaCl, the components formed were similar to those obtained by assembly in the same NaCl molarities. Preparations in the pH 7.5 buffer contained single components which sedimented at 56 S, 55 S, 54 S, 51 S, 46 S, 38 S, 33 S, and 24 S. With the exception of the 24 S component, components formed by disassembly in the same NaCl molarities and dissolved in pH 5.0 buffer sedimented faster.

The protein of sowbane mosaic virus was cleaved with cyanogen bromide (CNBr) and a highly basic peptide, sCB-1, was isolated by Sephadex and ion-exchange chromatography. The amino acid composition and sodium dodecyl sulfate-polyacrylamide gel electrophoresis indicated that sCB-1 had 49 amino acid residues. Eighteen of these residues are basic, fifteen are lysine, and three are arginine. sCB-1 moved faster in polyacrylamide gel electrophoresis at pH 2.2 than a similar sized CNBr peptide from the bean strain of southern bean mosaic virus with twelve basic residues. The highly basic nature of sCB-1 suggests that this portion of the SoMV protein sequence is involved in protein-RNA binding in the virus particles.