We study the Hodge spectral sequence of a local system on a compact, complex torus by means of the theory of harmonic integrals. It is shown that, in some cases, Baker's theorems concerning linear forms in the logarithms of algebraic numbers may be applied to obtain vanishing theorems in cohomology. This is applied to the study of Betti and Hodge numbers of compact analytic threefolds which are analogues of hyperelliptic surfaces. Among other things, it is shown that, in contrast to the two-dimensional case, some of these varieties are nonalgebraic. 0. Introduction. (0.0) The purpose of this paper is to determine the Hodge spectral sequence associated with a vector bundle with integrable connection on a complex torus. Such vector bundles typically arise as the hypercohomology sheaves attached to a proper and smooth morphism f: Y -* X where X is a complex torus. Consequently our results will have application to the study of those manifolds which admit such fiberings over tori. (0.1) In outline, the main result is as follows: Let (l, V) be a holomorphic vector bundle with integrable connection on a complex torus X = V/L, where L C V is a lattice in a complex vector space. Let W = QlV be the corresponding C-local system. We compute Hq(X, S2P(qll)) and Hk(X, W) in terms of harmonic differential forms via Hodge's theorem. First we show that qtS admits a global real analytic frame. Relative to this frame, C? differential forms in qIS may be represented by C?r m-vectors of differential forms p on V which are L-periodic (m = rank qLS'). Using the frame, a Hermitian metric may be introduced into the fibers of qLS in such a way that the harmonic theory takes on a simple form. Specifically, the Laplace equations lA 0 become, upon Fourier transform, AX(m).j4m) 0, m E Z2n (n = dimV). Each of these is a finite-dimensional matrix equation. We prove (for the choices made): (a) For Hk(X W), LA(m) j(m) 0 O has only the zero solution if m #7 0. Hence Hk(X, W) ker A(0). (b) For Hq(X, iP(qLS')), only a finite number of m can occur for which det i\(m) = 0 and these are identified by a diophantine condition involving the logarithms of the periods of X. These m are "singular". Therefore, modulo determining the singular m, all computations are reduced to a finite amount of linear algebra. Received by the editors October 28, 1980. 1980 Mathematics Subject Classification. Primary 14C30; Secondary 32J25, 14K20. 'Partially supported by NSF Grant MCS-800223 1. ?D 982 American Mathematical Society 0002-9947/82/0000-1051 /$04.75