1. Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions
- Author
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Gerhard Gompper, Felix Roosen-Runge, Roland G. Winkler, Anna Stradner, Jin Suk Myung, and Peter Schurtenberger
- Subjects
Molecular Dynamics Simulation ,010402 general chemistry ,01 natural sciences ,Article ,Diffusion ,Molecular dynamics ,0103 physical sciences ,Materials Chemistry ,ddc:530 ,Soft matter ,Physical and Theoretical Chemistry ,Diffusion (business) ,010306 general physics ,Anisotropy ,Physics ,Range (particle radiation) ,Protein dynamics ,Relaxation (NMR) ,Proteins ,0104 chemical sciences ,Surfaces, Coatings and Films ,Models, Chemical ,Chemical physics ,Hydrodynamics ,Particle - Abstract
The effect of a nonspherical particle shape on the dynamics in crowded solutions presents a significant challenge for a comprehensive understanding of interaction and structural relaxation in biological and soft matter. We report that small deviations from a spherical shape induce a nonmonotonic contribution to the crowding effect on the short-time cage diffusion compared with spherical systems, using molecular dynamics simulations with mesoscale hydrodynamics of a multiparticle collision dynamics fluid in semidilute systems with volume fractions smaller than 0.35. We show that the nonmonotonic effect due to anisotropy is caused by the combination of a reduced relative mobility over the entire concentration range and a looser and less homogeneous cage packing of nonspherical particles. Our finding stresses that nonsphericity induces new complexity, which cannot be accounted for in effective sphere models, and is of great interest in applications such as formulations as well as for the fundamental understanding of soft matter in general and crowding effects in living cells in particular.
- Published
- 2018
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