31 results on '"Jun WEN"'
Search Results
2. Untangling the taxonomy of the Cladrastis clade (Leguminosae: Papilionoideae) by integrating phylogenetics and ecological evidence
- Author
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Wen Ye, Lei Duan, Shuang-Wen Deng, Aj Harris, Jun Wen, Hong-Feng Chen, and Zhuqiu Song
- Subjects
biology ,Phylogenetics ,Styphnolobium ,Ecology ,Cladrastis ,Taxonomy (biology) ,Plant Science ,Cladrastis clade ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Environmental niche modelling - Published
- 2019
3. (2900) Proposal to conserve the name Ampelopsis ( Vitaceae ) with a conserved type
- Author
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Gea Zijlstra, Jun Wen, and John Wiersema
- Subjects
Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
4. From seven to three: Integrative species delimitation supports major reduction in species number inRhodiolasectionTrifida(Crassulaceae) on the Qinghai‐Tibetan Plateau
- Author
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Jian-Qiang Zhang, Jun Wen, Yi Ren, and Yuan-Cong Li
- Subjects
Qinghai tibetan plateau ,biology ,Section (archaeology) ,Rhodiola ,Botany ,Plant Science ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Coalescent theory ,Crassulaceae - Published
- 2019
5. Morphometric, phylogenetic and biogeographic analyses ofPyrularia(Santalales), a parasitic disjunct lineage between eastern Asia and eastern North America
- Author
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Jin‐Jin Hu, Zhuo Zhou, Hang Sun, and Jun Wen
- Subjects
Santalales ,Phylogenetic tree ,Evolutionary biology ,Lineage (evolution) ,East Asia ,Morphology (biology) ,Plant Science ,Biology ,Disjunct ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2019
6. Phylogeny of Hedysarum and tribe Hedysareae (Leguminosae: Papilionoideae) inferred from sequence data of ITS, matK , trnL ‐ F and psbA ‐ trnH
- Author
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Kuddisi Ertuğrul, Xue Yang, Pei-Liang Liu, Lei Duan, Jun Wen, Emine Arslan, and Zhao-Yang Chang
- Subjects
Hedysareae ,biology ,Zoology ,Plant Science ,biology.organism_classification ,Tribe (biology) ,Galegeae ,Intergenic region ,Data sequences ,Phylogenetics ,Botany ,Hedysarum ,Taxonomy (biology) ,Ecology, Evolution, Behavior and Systematics - Published
- 2015
7. How many species of bracken (Pteridium) are there? Assessing the Chinese brackens using molecular evidence
- Author
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Xian-Chun Zhang, Harald Schneider, Wenpan Dong, Shiliang Zhou, Xiaoqing Chen, and Jun Wen
- Subjects
Phylogenetic tree ,Ecology ,food and beverages ,Plant Science ,Biology ,Subspecies ,biology.organism_classification ,Phylogeography ,Phylogenetics ,Microsatellite ,Taxonomy (biology) ,Bracken ,Ecology, Evolution, Behavior and Systematics ,Global biodiversity - Abstract
Pteridium (the bracken) is a genus of common and widely distributed ferns throughout the world. The variation patterns of morphology in the genus are highly complex and no consensus has been reached among taxonomists regarding the number of species as well as subdivision of the variable species. To address the question of how many species and subspecies of Pteridium occur in Asia, 75 populations were sampled in Bolivia, China, Japan, Malaysia, Mexico and Peru. Sequence data of three chloroplast DNA regions, rps4-trnSGGA, rpl16 and trnSGCU-trnGUCC and the genotype data of three microsatellite loci were collected. The newly generated sequence data combined with the sequences already available from GenBank for samples from all over the world were subjected to several phylogenetic analyses and species delimitation tests. The results support recognition of two diploid species, P. aquilinum in the Northern Hemisphere and Africa and P. esculentum in South America and Australia. Evidence was found to recognize one Asian tetraploid species, P. semihastatum. The Eurasian occurrences of P. aquilinum can be further subdivided into subsp. aquilinum occurring in Africa, Europe and Asia Minor; subsp. japonicum occurring from East Asia to eastern Europe; subsp. wightianum occurring from central China to Malesia (Malay Peninsula, New Caledonia, New Zealand) and northern Australia. The North American subsp. latiusculum was also found in India. Some local "species" recorded in Flora of China likely represent hybrids between subsp. japonicum and subsp. wightianum. Keywords chloroplast; microsatellite; phylogeny; phylogeography; Pteridium; taxonomy
- Published
- 2014
8. Biogeography: Where do we go from here?
- Author
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Ze-Long Nie, Jun Wen, Vicki A. Funk, Stefanie M. Ickert-Bond, and Richard H. Ree
- Subjects
Phylogeography ,Ecology ,Ecology (disciplines) ,Biogeography ,Lineage (evolution) ,Biodiversity ,Context (language use) ,Plant Science ,Biology ,Data science ,Ecology, Evolution, Behavior and Systematics ,Field (geography) ,Environmental niche modelling - Abstract
Biogeography is a multidisciplinary science concerned with how and why organisms are distributed as they are on Earth. It links fields such as systematics, ecology, paleontology, and climatology, and occupies a central position in evolutionary biology, being fundamental to the study of processes such as speciation and adaptive radiation. Here we provide a brief overview of some particularly dynamic areas of inquiry and offer some perspectives on future directions for the field. We hope that some historical debates, such as those over the importance of dispersal, or the validity of molecular dating, are finally being put to rest. Over the last decade, biogeography has become increasingly integrative, and has benefited from advances in statistical methods for inferring geographic range dynamics in a phylogenetic context, molecular estimation of lineage divergence times, and modeling lineage birth and death. These are enabling greater insights into patterns of organismal diversification in time and space. In the next decade, analytical challenges are emerging on several fronts. For example, phylogenies are increasing in size and taxonomic breadth and new sequencing technologies enabling phylogenetic and phylogeographic datasets are increasingly genomic in depth. In addition, geographic occurrence data are accumulating in online repositories, yet tools for data mining and synthetic analysis are lacking for comparative multi-lineage studies. Biogeography is thus entering an era characterized by phylogenomic datasets, increasingly comprehensive sampling of clades, and interdisciplinary synthesis. We anticipate continued progress in our understanding of biodiversity patterns at regional and global scales, but this will likely require greater collaboration with specialists in bioinformatics and computational science. Finally, it is clear that biogeography has an increasingly important role to play in the discovery and conservation of biodiversity. Lessons learned from biogeographic studies of islands are being applied to better understand extinction dynamics as continental ecosystems become more fragmented, and phylogeography and ecological niche modeling offer innovative paths toward the discovery of previously unknown species distributions and priority areas for conservation. The future of biogeography is bright and filled with exciting challenges and opportunities.
- Published
- 2013
9. The Shenzhen Declaration on Plant Sciences
- Author
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Wei-Hua Zhu, Harold A. Mooney, Peter H. Raven, Hong-Wen Huang, Song Ge, Sandra Knapp, W. John Kress, Huanming Yang, De-Yuan Hong, Gen-Lin Jiao, Yu-Xian Zhu, Wei-Hua Wu, Peter R. Crane, and Jun Wen
- Subjects
Environmental protection ,Law ,Political science ,Declaration ,Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2017
10. The first phylogenetic analysis of Tetrastigma (Miq.) Planch., the host of Rafflesiaceae
- Author
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Jun Wen, Ping-Ting Chen, and Long-Qing Chen
- Subjects
Rafflesiaceae ,biology ,Phylogenetic tree ,Host (biology) ,Phylogenetics ,Botany ,Rafflesia ,Plant Science ,Tetrastigma ,biology.organism_classification ,Vitaceae ,Ecology, Evolution, Behavior and Systematics - Published
- 2011
11. Molecular phylogeny and biogeography of three closely related genera,Soroseris,Stebbinsia, andSyncalathium(Asteraceae, Cichorieae), endemic to the Tibetan Plateau, SW China
- Author
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Jun Wen, Ze-Long Nie, Hang Sun, and Jian-Wen Zhang
- Subjects
Polytomy ,geography ,Plateau ,geography.geographical_feature_category ,biology ,Ecology ,Biogeography ,Allopatric speciation ,Plant Science ,biology.organism_classification ,Monophyly ,Evolutionary biology ,Molecular phylogenetics ,Cichorieae ,Clade ,Ecology, Evolution, Behavior and Systematics - Abstract
Soroseris, Stebbinsia, and Syncalathium are three genera of the sunflower family (Asteraceae) with restricted distributions on high screes of the Tibetan Plateau. We present a molecular analysis to test the monophyly of the genera, evaluate the phylogenetic relationships and construct their biogeographic diversification history. Nuclear ITS and plastid trnL-F and psbA-trnH fragments were analyzed with parsimony, Bayesian inference, and relaxed Bayesian dating for all species of Soroseris, Stebbinsia, and Syncalathium. Stebbinsia is part of a polytomy with several lineages of Soroseris. Syncalathium is biphyletic with Syn. souliei placed within subtribe Lactucinae and the remaining species close to the Soroseris-Stebbinsia clade within subtribe Crepidinae. Bayesian dating based on ITS sequences and using four fossil calibrations suggests that the stem and crown ages of the Soroseris-Stebbinsia clade and the two groups of Syncalathium are between 8.44 and 1.56 million years. Stebbinsia should be treated as a section of Soroseris and Syncalathium souliei should be excluded from Syncalathium and either placed in Lactuca s.l. or established as a new genus in Lactucinae. The remaining species are to be treated as Syncalathium s.str. in Crepidinae. The diversification of these groups in the Tibetan Plateau is of relatively young age, and can be explained by rapid diversification and radiation of the Soroseris-Stebbinsia clade, allopatric speciation within Syncalathium s.str. and convergent evolution of Syncalathium s.str. and Syn. souliei. The speciation events correlated with climatic change and fragmentation of scree habitats during the uplift of the Tibetan Plateau. Possible migration routes in Syncalathium s.str. from the northeast to the central and southern part of the Tibetan Plateau are suggested.
- Published
- 2011
12. Molecular phylogeny of Salix L. (Salicaceae) inferred from three chloroplast datasets and its systematic implications
- Author
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Jia-Hui Chen, Yongping Yang, Jun Wen, and Hang Sun
- Subjects
Systematics ,Monophyly ,Chosenia ,biology ,Chloroplast DNA ,Phylogenetic tree ,Botany ,Molecular phylogenetics ,Taxonomy (biology) ,Plant Science ,Subgenus ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Abstract
Salix is a taxonomically difficult genus and its generic limits and infrageneric division are still highly controversial. We employed sequences of the chloroplast rbcL gene, trnD-T spacer and atpB-rbcL spacer for phylogenetic analyses of Salix. The results strongly support that Salix. Toisusu and Chosenia form a monophyletic group, confirming the merge of Toisusu and Chosenia with Salix. Within Salix s.l., two major clades are recognizable; one contains species of subgenus Salix (excluding sections Triandrae and Urbanianae), with the New World and the Old World species forming strongly supported clades, respectively; and the other includes sections Triandrae, Urbanianae, Chosenia and all species of subgenera Chamaetia and Vetrix, with the latter two subgenera forming a robustly supported subclade but with low resolution. A new infrageneric classification of Salix is herein proposed. The previously recognized subgenus Salix is split into three subgenera: Salix, Chosenia and Triandrae, and subgenera Chamaetia and Vetrix are combined as subgenus Vetrix.
- Published
- 2010
13. Phylogeny of Nolana (Nolaneae, Solanoideae, Solanaceae) as inferred from granule-bound starch synthase I (GBSSI) sequences
- Author
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Akiko Soejima, Alan Tye, Ze-Long Nie, Michael O. Dillon, Tieyao Tu, Ting-Shuang Yi, and Jun Wen
- Subjects
Phylogenetic tree ,biology ,Plant Science ,biology.organism_classification ,Monophyly ,Taxon ,Sister group ,Phylogenetics ,Genus ,Solanoideae ,parasitic diseases ,Botany ,Nolana ,geographic locations ,Ecology, Evolution, Behavior and Systematics - Abstract
The phylogenetic relationships of Nolana (Nolaneae, Solanaceae) were constructed using partial sequences (ca. 891 bp) of the granule-bound starch synthase I (GBSSI) or the waxy gene. Nolana, with 89 species, is primarily distributed in coastal Chile (49 spp.) and Peru (43 spp.), and of these, four species are recorded in Peru and Chile, and another from the Galapagos Islands, Ecuador. Our phylogenetic analysis, utilizing a sampling of 63 of the 89 species, supports the monophyly of Nolana and recovered three clades with 95%-100% bootstrap support. Nolana sessiliflora is the sister taxon to the remainder of the genus. Two large, highly supported clades are evident; one containing taxa from Chile, Peru and the Galapagos Islands, and another containing taxa from Chile and Peru. Nolana galapagensis, an endemic to the Galapagos Islands, is suggested to be sister to N. arenicola in a clade that also includes N. adansonii from southern Peru and northern Chile. These two species differ substantially in habitat preference, habit, leaf shape, and mericarp morphology. The monophyly is confirmed for a morphologically cohesive group composed of N. acuminata, N. baccata, N. elegans, N. reichei, N. parviflora, N. pterocarpa, and N. paradoxa, a clade of essentially Chilean species.
- Published
- 2007
14. An unusual new species of Trevesia from Vietnam and its implications on generic delimitation in Araliaceae
- Author
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Jacinto C. Regalado, Chunghee Lee, Phan Ke Loc, Jun Wen, Nguyen Tien Hiep, and Leonid V. Averyanov
- Subjects
Taxon ,Trevesia ,Phylogenetic tree ,Inflorescence ,Botany ,Ovary (botany) ,Araliaceae ,Plant Science ,Biology ,Brassaiopsis ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,NdhF - Abstract
Trevesia vietnamensis J. Wen & P.K. L?c (Araliaceae) is described as an unusual new species from northwestern Vietnam. This species has 4?5-merous flowers with a 4-5-locular ovary and palmately compound leaves and would thus fit well within Brassaiopsis morphologically. Phylogenetic analysis using the nuclear ribosomal ITS and the chloroplast ndhF and trnL-F sequences, however, clearly places the new taxon in Trevesia, defined to include species with 6-16-merous flowers with 6-16-locular ovaries, and palmately lobed simple leaves. The discovery of Trevesia vietnamensis thus blurs the generic boundary between Trevesia and Brassaiopsis. The phylogenetic analysis suggests a sister-species relationship between Trevesia vietnamensis and T. lateospina from northern Thailand, a finding supported by a shared morphological character?the presence of setose hairs on the inflorescences and young stems. Trevesia vietnamensis is restricted to two localities in northwestern Vietnam. It grows in limestone areas in valleys and on shady mountain slopes at 500-700 m in primary, tropical, monsoon, broad-leaved forests.
- Published
- 2007
15. Evolutionary relationships and diversification of Stachyuraceae based on sequences of four chloroplast markers and the nuclear ribosomal ITS region
- Author
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Yu-Ping Zhu, Zhi-Yun Zhang, Jun Wen, and Zhi-Duan Chen
- Subjects
Crossosomataceae ,biology ,Plant Science ,Ribosomal RNA ,biology.organism_classification ,Monophyly ,Chloroplast DNA ,Phylogenetics ,Evolutionary biology ,Stachyurus ,Botany ,Clade ,Ecology, Evolution, Behavior and Systematics ,NdhF - Abstract
Stachyuraceae consist of a single genus Stachyurus with about ten species endemic to eastern Asia. The family was recently shown to be sister to the western North American Crossosomataceae. The phylogeny of Stachyuraceae and its relatives was reconstructed based on sequences of four chloroplast DNA regions (trnL intron and adjacent trnL-trnF spacer, rpsl6 intron, ndhF gene, trnS-trnG-trnG region) and the nuclear ribosomal ITS region. The monophyly of Stachyurus was strongly supported. The divergence time between Stachyuraceae and Crossosomataceae was estimated to be 68.25 ± 10.36 million years ago (MYA) using the penalized likelihood method based on rbcL sequences data with fossil calibration. Stachyurus sigeyosii was previously synonymized as S. himalaicus, but our analysis shows that it is sister to the morphologically highly distinct S. praecox from Japan and does not form a clade with S. himalaicus.
- Published
- 2006
16. Chromosomal evolution in Araliaceae and close relatives
- Author
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Jun Wen, Ting-Shuang Yi, Gregory M. Plunkett, and Porter P. Lowry
- Subjects
biology ,Apiales ,Merrilliopanax ,Hedera ,Metapanax ,Hydrocotyle ,Zoology ,Plant Science ,biology.organism_classification ,Aralia ,Arthrophyllum ,Ecology, Evolution, Behavior and Systematics ,Polyscias - Abstract
Chromosome numbers of 45 accessions representing 16 genera and 37 species of Araliaceae are herein reported, of which 30 species and seven genera (Apiopetalum, Arthrophyllum, Delarbrea, Merrilliopanax, Metapanax, Myodocarpus, and Pseudosciadium) are recorded for the first time. The evolution of this character is also examined in light of recent hypotheses of phylogenetic relationships. Chromosome numbers in the family are relatively uniform, generally with 2n = 24 or 48. However, the genus Hedera exhibits extreme variability, with a polyploid series ranging from 2n = 48 to 192. The basic number of Araliaceae is inferred to be x = 12, although x = 6 cannot be ruled out. The "Asian palmate" clade, the largest of the three major clades of core Araliaceae, is primarily characterized by polyploidy, although several genera have sometimes been regarded as evolutionarily "primitive". By contrast, Aralia, Panax, and Polyscias (representing other major clades within the family) include species with both diploids and tetraploids. Four genera recently segregated from core Araliaceae (Apiopetalum, Delarbrea, Myodocarpus, and Pseudosciadium) are reported as n = 12. The formerly apiaceous Hydrocotyle (now placed in Araliaceae) is best interpreted as x = 12, although some aneuploid species may exist with x = 9. Hydrocotyle also exhibits extensive variation in ploidal level. Within Araliaceae, chromosomal variation is largely related to ploidal level, with relatively few cases of aneuploidy, such as those documented in Panax ginseng and Hydrocotyle. The available data are largely consistent with the hypothesis that the basic chromosome number of Apiales is x = 6.
- Published
- 2004
17. Phylogenetic utility and evidence for multiple copies of GranuleBound Starch Synthase I (GBSSI) in Araliaceae
- Author
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Jun Wen and A. D. Mitchell
- Subjects
Genetics ,Tetrapanax ,Phylogenetic tree ,biology ,Phylogenetics ,Metapanax ,Plant Science ,Brassaiopsis ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Schefflera ,Oreopanax ,NdhF - Abstract
Sequence data from a portion of the Granule-Bound Starch Synthase I (GBSSI) gene or waxy, were used to infer the phylogeny of the core Asian Araliaceae clade. The amplified region included exons 10 and 11 together with the intervening intron. The level of intrageneric variation was low (∼2%) relative to that among genera (4-5%). Two main paralogous copies of waxy were revealed by sequencing cloned PCR products for Oreopanax floribundum, O. capitatus, Tetrapanax papyrifer, and Schefflera delavayi, which might be the result of gene duplication or polyploidy. Analyses based on parsimony, maximum likelihood and Bayesian methods supported several clades, including Brassaiopsis with Thevesia, Macropanax with Metapanax, Eleutherococcus with Kalopanax, and Panax with Aralia. Analyses also suggested a possible relationship between Tetrapanax papyrifer and Schefflera delavayi within the Asian core Araliaceae. The waxy phylogeny was largely congruent with the topologies based on previous analyses of nuclear ribosomal ITS and chloroplast ndhF data. The phylogenetic inference from each waxy copy was similar, although both copies were not recovered for all species sampled. It is concluded that with special consideration and care given to detecting and accounting for the presence of multiple copies, waxy can provide information within Araliaceae. However, efforts should now be directed towards exploring a larger portion of the gene, particularly the 5' region.
- Published
- 2004
18. Engler Medal in Gold Presented to Professor De‐yuan Hong
- Author
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Jun Wen
- Subjects
Medal ,media_common.quotation_subject ,Art history ,Plant Science ,Art ,Ecology, Evolution, Behavior and Systematics ,media_common - Published
- 2017
19. Parashorea chinensis Wang Hsie and P. chinensis var. kwangsiensis Lin Chi: Two exceptional cases of names with a corporate authorship
- Author
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Wen-Hong Chen, Jun Wen, and Yu-Min Shui
- Subjects
Geography ,Taxon ,Traditional medicine ,Parashorea chinensis ,biology ,Context (language use) ,Plant Science ,International Code of Nomenclature for algae, fungi, and plants ,biology.organism_classification ,Nomenclature ,Ecology, Evolution, Behavior and Systematics ,Genealogy - Abstract
Parashorea chinensis Wang Hsie and Parashorea chinensis var. kwangsiensis Lin Chi (Dipterocarpaceae) are economically and ecologically important tree taxa in China and Vietnam. Their authorship should be "Wang Hsie" and "Lin Chi", respectively, which represent two logograms of working groups that existed in the particular circumstances from the 1960s to the 1970s in China. The author of Parashorea chinensis has sometimes been designated inappropriately as H. Wang. We herein discuss in detail these two unique cases in the context of the International Code of Botanical Nomenclature.
- Published
- 2011
20. Typification of the Linnaean species of Aralia (Araliaceae)
- Author
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Jun Wen and James L. Reveal
- Subjects
Asterella ,Herbarium ,Botany ,Typification ,Taxonomy (biology) ,Plant Science ,Biology ,Aralia spinosa ,biology.organism_classification ,Aralia ,Ecology, Evolution, Behavior and Systematics ,Aralia chinensis ,Aralia nudicaulis - Abstract
& 1953. Studies on the Japanese species of Asterella (2). J Hattori Bot. Lab. 9: 25-31. Sljakov, R. N. 1982. Hepaticae of the northern region of US.S.R., 5. Akademija Nauk SSSR, Leningrad. Sprengel, K. P. J. 1827. Systema vegetabilium, 4. Dieterich, Gottingen. Stephani, E 1898-1899. Fimbriaria. Pp. 97-140 in: Species hepaticarum, 1. Herbier Boissier, Gen"ve, Bale & Lyon. 1917. Fimbriaria. Pp. 11-18 in: Species hepaticarum, 6. Herbier Boissier, Genbve, Bale & Lyon. Steudel, E. G. 1824. Nomenclator botanicus, ed. 1, 2. Cotta, Stuttgart & Tuibingen. Taylor, T. 1837. De Marchantieis. Trans. Linn. Soc. London 17: 375-395. Trevisan, V. 1853. Herbarium cryptogamicum trevisianum. II Musci, Hepaticae. Bianchi, Padua.
- Published
- 1992
21. Phylogeny of Hedysarum and tribe Hedysareae (Leguminosae: Papilionoideae) inferred from sequence data of ITS, matK, trnL-F and psbA-trnH.
- Author
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Lei Duan, Jun Wen, Xue Yang, Pei-Liang Liu, Arslan, Emine, Ertuğrul, Kuddisi, and Zhao-Yang Chang
- Subjects
HEDYSARUM ,LEGUMES ,POPULATION genetics ,BIOGEOGRAPHY ,PHYLOGENY ,GENETIC speciation - Abstract
Based on sequence data of the nuclear ITS and plastid matK, trnL-F and psbA-trnH markers of 162 species (169 accessions), the relationships and monophyly of tribe Hedysareae and its close relatives were assessed, with special reference to the infrageneric phylogeny of Hedysarum. The results showed that Hedysareae sensu Lock is not monophyletic, and its relationships with tribe Galegeae are unclear. Tribe Galegeae is polyphyletic. Fledysareae sensu Lock includes two strongly supported clades: the Caraganean clade and the Hedysaroid clade. Tribe Caraganeae Ranjbar was supported to be recognized based on the Caraganean clade, but it is herein suggested to be re-circumscribed by excluding Chesneya and Gueldenstaedtia. Our results support treating the Hedysaroid clade as tribe Hedysareae, comprising nine genera: Alhagi, Corethrodendron, Ebenus, Eversmannia, Greuteria, Hedysarum, Onobrychis, Sulla and Taverniera. Hedysarum as delimited here consists of three main clades: the first clade (the mesic group) corresponds to H. sect. Hedysarum; the second clade (the xeric group) is the re-defined H. sect. Multicaulia, consisting of the core group of H. sect. Multicaulia plus the former genus Sartorio-, and the third clade (the psychrophilic group) includes the monospecific H. sect. Stracheya (with H. tibeticum) and two species previously placed in H. sect. Multicaulia (H. kumaonense, H. lehmannianum). [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
22. Phylogenetic Utility and Evidence for Multiple Copies of Granule-Bound Starch Synthase I (GBSSI) in Araliaceae
- Author
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Anthony Mitchell and Jun Wen
- Subjects
Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2004
23. How many species of bracken (Pteridium) are there? Assessing the Chinese brackens using molecular evidence.
- Author
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Shiliang Zhou, Wenpan Dong, Xiaoqing Chen, Xianchun Zhang, Jun Wen, and Schneider, Harald
- Subjects
PLANT classification ,PTERIDIUM ,CHLOROPLAST DNA ,NUMBERS of species ,MICROSATELLITE repeats ,BIOLOGICAL variation ,PHYLOGEOGRAPHY - Abstract
Pteridium (the bracken) is a genus of common and widely distributed ferns throughout the world. The variation patterns of morphology in the genus are highly complex and no consensus has been reached among taxonomists regarding the number of species as well as subdivision of the variable species. To address the question of how many species and subspecies of Pteridium occur in Asia, 75 populations were sampled in Bolivia, China, Japan, Malaysia, Mexico and Peru. Sequence data of three chloroplast DNA regions, rps4-trnSGGA, rpll6 and trnSGCU-trnGUCC and the genotype data of three microsatellite loci were collected. The newly generated sequence data combined with the sequences already available from GenBank for samples from all over the world were subjected to several phylogenetic analyses and species delimitation tests. The results support recognition of two diploid species, P. aquilinum in the Northern Hemisphere and Africa and P. esculentum in South America and Australia. Evidence was found to recognize one Asian tetraploid species, P. semihastatum. The Eurasian occurrences of P. aquilinum can be further subdivided into subsp. aquilinum occurring in Africa, Europe and Asia Minor; subsp. japonicum occurring from East Asia to eastern Europe; subsp. wightianum occurring from central China to Malesia (Malay Peninsula, New Caledonia, New Zealand) and northern Australia. The North American subsp. latiusculum was also found in India. Some local "species" recorded in Flora of China likely represent hybrids between subsp. japonicum and subsp. wightianum. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
24. Phylogenetic relationships and morphological diversity in Neotropical Heliotropium (Heliotropiaceae).
- Author
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Luebert, Federico, Brokamp, Grischa, Jun Wen, Weigend, Maximilian, and Huger, Hartmut H.
- Subjects
HELIOTROPIUM ,BORAGINACEAE ,PLANT phylogeny ,PLANT diversity - Abstract
Little is known about vegetative morphological diversification in Neotropical plant clades in comparison with diversification of reproductive characters. Phylogenetic relationships of the Neotropical Heliotropium (Heliotropiaceae) were studied using sequences of nrITS and four plastid regions (trnL-trnF, trnS-trnG, trnH-psbA , rps16). Vegetative morphological diversity (leaf morphology, habit), measured as amount of morphospace occupied and as variance of individual characters, was compared among the clades resolved and between groups of species inhabiting dry and humid areas. Three well-supported clades were recovered: (1) Heliotropium sect. Heliothamnus from the tropical Andes; (2) Heliotropium sect. Cochranea from the Peruvian and the Atacama Deserts; and (3) the Tournefortia clade, comprising the remaining American sections of Heliotropium and the mainly Neotropical Tournefortia sect. Tournefortia. Phylogenetic discordance detected between the plastid and nuclear partitions may have been due to lineage sorting, hybridization or differences in number of informative sites. Morphological diversity was largest in the Tournefortia clade and tended to be greater in dry than in humid areas, but without statistical support. Heliotropium sect. Cochranea was as diverse as the Tournefortia clade in leaf morphology and may have experienced adaptive radiation in the Atacama Desert. Lowest vegetative diversity was found in Heliotropium sect. Heliothamnus. The infrageneric delimitation in Heliotropium needs reassessment. [ABSTRACT FROM AUTHOR]
- Published
- 2011
25. Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences.
- Author
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Hui Ren, Li-Mm Lu, Soejima, Akiko, Luke, Quentin, Dian-Xiang Zhang, Zhi-Duan Chen, and Jun Wen
- Subjects
VITACEAE ,PLASTIDS ,FLOWERS ,PLANT phylogeny ,BIOLOGICAL classification - Abstract
The phylogeny of Vitaceae was reconstructed sampling 114 accessions of Vitaceae and the outgroup Leea of Leeaceae, using three noncoding plastid markers: trnC-petN, trnH-psbA, and trnL-F. Six 5-merous genera including Parthenocissus, Yua, Ampelocissus, Vitis, Nothocissus, and Pterisanthes form a well-supported clade. Ampelopsis, Rhoicissus, and the Cissus striata complex form a clade sister to the clade containing all the other taxa of Vitaceae. The core Cissus dade is resolved to be sister to the Cayratia-Tetrastigma-Cyphostemma clade, forming a clade of taxa with 4-merous flowers. The Parthenocissus-Yua clade is sister to the Ampelocissus-Vitis-Nothocissus-Pterisanthes clade. The Old World Cissus is paraphyletic, with the New World core Cissus nested within it. The intercontinental disjunction between Africa and Asia may have evolved at least twice in Cissus. Cayratia is paraphyletic with four Asian species sampled grouping with Tetrastigma and the African species forming another clade. [ABSTRACT FROM AUTHOR]
- Published
- 2011
26. The first phylogenetic analysis of Tetrastigma (Miq.) Planch., the host of Rafflesiaceae.
- Author
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Pingting chen, Longqing chen, and Jun Wen
- Subjects
RAFFLESIACEAE ,PHYLOGENY ,HYPOTHESIS ,HOST plants ,VITACEAE ,HOST-parasite relationships - Abstract
Tetrastigma (Vitaceae) comprises about 95 species widely distributed throughout subtropical and tropical Asia, and extending to Australia. The genus is best known for being the host plants of Rafflesia. with the largest flower in the world, and other members of Rafflesiaceae. The phylogeny of Tetrastigma, however, remains poorly known. Four plastid markers (atpB-rbcL, psbA-trnH, trnL-trnF intergenic spacers, rps16 intron) were employed to infer the first phylogeny of Tetrastigma. Our sampling included eleven reported host species of Rafflesiaceae. being scattered in seven major clades throughout the Tetrastigma tree. A Templeton test rejected the hypothesis of a single origin of the parasite-host relationship between Rafflesiaceae and Tetrastigma. Analysis of 114 accessions representing 53 species and four varieties throughout the distributional range of the genus provided robust support for the monophyly of Tetrastigma, yet Tetrastigma was found to be nested within Cayratia. Tetrastigma subg. Palmicirrata from the Sino-Himalayan region was nested within the large and widely distributed T. subg. Tetrastigma. Two major clades (clades A and F) in our phylogeny correspond to T. sect. Tetrastigma and T. sect. Carinata of subgenus Tetrastigma, respectively [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
27. Molecular phylogeny and biogeography of three closely related genera, Soroseris, Stebbinsia, and Syncalathium (Asteraceae, Cichorieae), endemic to the Tibetan Plateau, SW China.
- Author
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Jian-Wen Zhang, Ze-Long Nie, Jun Wen, and Hang Sun
- Subjects
PLANT phylogeny ,PLANT classification ,SUNFLOWERS ,BAYESIAN analysis ,PARSIMONIOUS models - Abstract
Soroseris, Stebbinsia, and Syncalathium are three genera of the sunflower family (Asteraceae) with restricted distributions on high screes of the Tibetan Plateau. We present a molecular analysis to test the monophyly of the genera, evaluate the phylogenetic relationships and construct their biogeographic diversification history. Nuclear ITS and plastid IrnL-F and psbAirnH fragments were analyzed with parsimony, Bayesian inference, and relaxed Bayesian dating for all species of Soroseris, Stebbinsia, and Syncalathium. Stebbinsia is part of a polytomy with several lineages of Soroseris. Syncalathiuin is biphyletic with Syn. souliei placed within subtribe Lactucinae and the remaining species close to the Soroseris-Stebbinsia dade within subtribe Crepidinae. Bayesian dating based on ITS sequences and using four fossil calibrations suggests that the stem and crown ages of the Soroseris-Stebbinsia dade and the two groups of Syncalathium are between 8.44 and 1.56 million years. Slebbinsia should be treated as a section of Soroseris and Syncalathium sou/iei should be excluded from Synca/athium and either placed in Laciuca si. or established as a new genus in Lactucinae. The remaining species are to be treated as Synca/aihium s.str. in Crepidinae. The diversification of these groups in the Tibetan Plateau is of relatively young age, and can be explained by rapid diversification and radiation of the Soroseris-Stebbinsia dade, allopatric speciation within Syncalaihium s.str. and convergent evolution of Syncalathium s.str. and Syn. sou/iei. The speciation events correlated with climatic change and fragmentation of scree habitats during the uplift of the Tibetan Plateau. Possible migration routes in Synca/athium s.str. from the northeast to the central and southern part of the Tibetan Plateau are suggested. [ABSTRACT FROM AUTHOR]
- Published
- 2011
28. An unusual new species of Trevesia from Vietnam and its implications on generic delimitation in Araliaceae.
- Author
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Jun Wen, Ke Lôc, Phan, Hiep, Nguyen Tien, Regalado Jr., Jacinto, Averyanov, Leonid V., and Chunghee Lee
- Subjects
ANGIOSPERMS ,BIODIVERSITY ,ISOENZYMES ,PLANT isozymes ,BIOLOGICAL evolution ,GENOTYPE-environment interaction ,INFLORESCENCES ,FLORAL products - Abstract
Trevesia vietnamensis J. Wen & P.K. Lôc (Araliaceae) is described as an unusual new species from northwestern Vietnam. This species has 4-5-merous flowers with a 4-5-locular ovary and palmately compound leaves and would thus fit well within Brassaiopsis morphologically. Phylogenetic analysis using the nuclear ribosomal ITS and the chloroplast ndhF and trnL-F sequences, however, clearly places the new taxon in Trevesia, defined to include species with 6-16-merous flowers with 6-16-locular ovaries, and palmately lobed simple leaves. The discovery of Trevesia vietnamensis thus blurs the generic boundary between Trevesia and Brassaiopsis. The phylogenetic analysis suggests a sister-species relationship between Trevesia vielnamensis and T. lateospina from northern Thailand, a finding supported by a shared morphological character—the presence of setose hairs on the inflorescences and young stems. Trevesia vietnamensis is restricted to two localities in northwestern Vietnam. It grows in limestone areas in valleys and on shady mountain slopes at 500-700 m in primary, tropical, monsoon, broad-leaved forests. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
29. Chromosomal evolution in Araliaceae and close relatives.
- Author
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Tingshuang Yi, Lowry II, Porter P., Plunkett, Gregory M., and Jun Wen
- Subjects
ARALIACEAE ,ANGIOSPERMS ,PHANEROGAMS ,PLOIDY ,CHROMOSOMES ,POLYPLOIDY - Abstract
Chromosome numbers of 45 accessions representing 16 genera and 37 species of Araliaceae are herein reported, of which 30 species and seven genera (Apiopetalum, Arthrophyllum, Delarbrea, Merrilliopanax, Metapanax, Myodocarpus, and Pseudosciadium) are recorded for the first time. The evolution of this character is also examined in light of recent hypotheses of phylogenetic relationships. Chromosome numbers in the family are relatively uniform, generally with 2n = 24 or 48. However, the genus Hedera exhibits extreme varia- bility, with a polyploid series ranging from 2n = 48 to 192. The basic number of Araliaceae is inferred to be x = 12, although x = 6 cannot be ruled out. The ‘Asian palmate’ clade, the largest of the three major clades of core Araliaceae, is primarily characterized by polyploidy, although several genera have sometimes been regarded as evolutionarily ‘primitive’. By contrast, Aralia, Panax, and Polyscias (representing other major clades within the family) include species with both diploids and tetraploids. Four genera recently segregated from core Araliaceae (Apiopetalum, Delarbrea, Myodocarpus, and Pseudosciadium) are reported as n = 12. The formerly apiaceous Hydrocotyle (now placed in Araliaceae) is best interpreted as x = 12, although some aneuploid species may exist with x = 9. Hydrocotyle also exhibits extensive variation in ploidal level. Within Araliaceae, chromosomal variation is largely related to ploidal level, with relatively few cases of aneuploidy, such as those documented in Panax ginseng and Hydrocotyle. The available data are largely consistent with the hypothesis that the basic chromosome number of Apiales is x = 6. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
30. Parashorea chinensis Wang Hsie and P. chinensis var. kwangsiensis Lin Chi: Two exceptional cases of names with a corporate authorship.
- Author
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Vu-Mm Shui, Jun Wen, and Wen-Hong Chen
- Subjects
DIPTEROCARPACEAE ,BOTANY ,BOTANICAL nomenclature - Abstract
Parashorea chinensis Wang Hsie and Parashorea chinensis var. kwangsiensis Lin Chi (Dipterocarpaceae) are economically and ecologically important tree taxa in China and Vietnam. Their authorship should be "Wang Hsie" and "Lin Chi", respectively, which represent two logograms of working groups that existed in the particular circumstances from the 1960s to the 1970s in China. The author of Parashorea chinensis has sometimes been designated inappropriately as H. Wang. We herein discuss in detail these two unique cases in the context of the International Code of Botanical Nomenclature. [ABSTRACT FROM AUTHOR]
- Published
- 2011
31. (004) Proposal to recommend citation of herbarium serial numbers of type specimens.
- Author
-
Yu-Min Shui and Jun Wen
- Subjects
BOTANICAL specimens ,IDENTIFICATION of biological specimens ,COLLECTION & preservation of plant specimens ,HERBARIA ,TAXONOMY - Abstract
The article reports on the proposal that recommends citation of herbarium serial numbers of type specimens. It is stated that herbarium serial number of a specimen is important in managing a herbarium. The herbarium serial number refers to a single sheet of a gathering in a given herbarium. The use of the serial number of the specimen may clarify confusion related to a mixed collection when more than one specimen is labeled as the same collection number.
- Published
- 2008
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