1. Construction and characterization of BAC libraries from major grapevine cultivars
- Author
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Stéphanie Pateyron, M. S. Grando, Lamoureux D, Boulos Chalhoub, Michel Caboche, Anne-Françoise Adam-Blondon, Anne Bernole, Riccardo Velasco, Giorgia Faes, Unité de recherche en génomique végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), and Istituto Agrario di San Michele all'Adige (IASMA)
- Subjects
construction ,0106 biological sciences ,Chromosomes, Artificial, Bacterial ,Locus (genetics) ,Biology ,01 natural sciences ,Genome ,Polymerase Chain Reaction ,banque bac ,03 medical and health sciences ,vitis vinifera ,Species Specificity ,Gene duplication ,Genetics ,GRAPEVINE ,Genomic library ,Vitis ,Genome size ,030304 developmental biology ,Gene Library ,0303 health sciences ,Bacterial artificial chromosome ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,BACTERIAL ARTIFICIAL CHROMOSOME ,Chromosome Mapping ,General Medicine ,Genome project ,Genetic marker ,vigne ,CHARACTERIZATION ,Agronomy and Crop Science ,Genome, Plant ,cultivar ,010606 plant biology & botany ,Biotechnology - Abstract
International audience; Genome projects were initiated on grapevine (Vitis vinifera L., 2n=38, genome size 475 Mb) through the successful construction of four bacterial artificial chromosome (BAC) libraries from three major cultivars, Cabernet Sauvignon (Cabernet S), Syrah and two different clones of Pinot Noir (Pinot N). Depending on the library, the genome coverage represented 4.5–14.8 genome equivalents with clones having a mean insert size of 93–158 kb. BAC pools suitable for PCR screening were constructed for two of these BAC libraries [Cabernet S and Pinot N clone (cl) 115] and subsequently used to confirm the genome coverage of both libraries by PCR anchoring of 74 genetic markers sampled from the 19 linkage groups. For ten of these markers, two bands on separate BAC pools were differentiated that could correspond either to different alleles or to a duplication of the locus being studied. Finally, a preliminary assessment of the correspondence between genetic and physical distances was made through the anchoring of all the markers mapped along linkage group 1 of the V. vinifera genetic map. A pair of markers, 2.1 cM apart, anchored the same BAC clones, which allowed us to estimate that 1 cM corresponded in this particular region to a maximum length of 130 kb.
- Published
- 2004
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