1. Structural basis for accommodation of emerging B.1.351 and B.1.1.7 variants by two potent SARS-CoV-2 neutralizing antibodies
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Zizhang Sheng, Yaoxing Huang, Gabriele Cerutti, Lihong Liu, Jude Bimela, Eswar R. Reddem, David D. Ho, Yicheng Guo, Peter D. Kwong, Jian Yu, Lawrence Shapiro, Micah Rapp, Pengfei Wang, and Fabiana Bahna
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Models, Molecular ,Protein Conformation, alpha-Helical ,medicine.drug_class ,Gene Expression ,Antibodies, Viral ,Monoclonal antibody ,Article ,Virus ,Neutralization ,Epitope ,Epitopes ,03 medical and health sciences ,Immune system ,Structural Biology ,medicine ,Potency ,Humans ,Protein Interaction Domains and Motifs ,B.1.351 and B.1.1.7 variants ,Cloning, Molecular ,Binding site ,Neutralizing antibody ,Molecular Biology ,030304 developmental biology ,low-frequency immune response ,0303 health sciences ,Binding Sites ,biology ,SARS-CoV-2 ,Cryoelectron Microscopy ,030302 biochemistry & molecular biology ,Antibodies, Monoclonal ,COVID-19 ,neutralizing antibody ,Evolutionary pressure ,Antibodies, Neutralizing ,Virology ,Recombinant Proteins ,HEK293 Cells ,Mutation ,Spike Glycoprotein, Coronavirus ,biology.protein ,Receptors, Virus ,cryo-EM ,Protein Conformation, beta-Strand ,Angiotensin-Converting Enzyme 2 ,receptor-binding domain ,Antibody ,Protein Binding - Abstract
Emerging SARS-CoV-2 strains, B.1.1.7 and B.1.351, from the UK and South Africa, respectively, show decreased neutralization by monoclonal antibodies and convalescent or vaccinee sera raised against the original wild-type virus, and are thus of clinical concern. However, the neutralization potency of two antibodies, 1–57 and 2–7, which target the receptor-binding domain (RBD) of the spike, was unaffected by these emerging strains. Here, we report cryo-EM structures of 1–57 and 2–7 in complex with spike, revealing each of these antibodies to utilize a distinct mechanism to bypass or accommodate RBD mutations. Notably, each antibody represented an immune response with recognition distinct from those of frequent antibody classes. Moreover, many epitope residues recognized by 1–57 and 2–7 were outside hotspots of evolutionary pressure for ACE2 binding and neutralizing antibody escape. We suggest the therapeutic use of antibodies, such as 1–57 and 2–7, which target less prevalent epitopes, could ameliorate issues of monoclonal antibody escape., Graphical abstract, Cerutti et al. report the structural characterization of two potent neutralizing antibodies, 1–57 and 2–7, bound to the SARS-CoV-2 spike. The cryo-EM structures elucidate distinct mechanisms to accommodate the RBD mutations observed in the B.1.1.7 and B.1.351 variants. Both antibodies represent low-frequency immune responses and their use as therapeutics is suggested.
- Published
- 2021
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