36 results on '"Okamoto, Yuko"'
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2. 1P108 Structural change of APP-C99 induced by interactions with cholesterol studied by Replica Exchange Umbrella Sampling (REUS) simulation(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
3. 2P008 Parameter dependency of an optimized force field for each amino acid(01A. Protein:Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
4. 3P011 Implementation of Replica-Exchange Umbrella Sampling to the DFTB+ Simulation Package(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
5. 1P004 Concentration Dependence of Amyloid Peptide Assembly by Using the Molecular Dynamics Simulations(Protein: Structure,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))
6. 3P066 The Stability and Folding/Unfolding of Staphylococcal Nuclease at the Residue Level(01C. Protein: Property,Poster)
7. 2P016 Optimization of force-field parameters for protein systems by an energy-based reweighting approach(01A. Protein: Structure,Poster)
8. 1P128 Calculation of proton transfer in malonaldehyde using DFTB and REUS(06.Electronic state,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)
9. 1PT132 Development of a force field of backbone dihedral angles for each amino acid using Protein Data Bank(The 50th Annual Meeting of the Biophysical Society of Japan)
10. 3PT144 Study on phase transition of coarse-grained lipid bilayer by REMD simulations(The 50th Annual Meeting of the Biophysical Society of Japan)
11. 3PT224 First principles molecular simulation with a generalized-ensemble algorithm for studying chemical reactions of biomolecular systems(The 50th Annual Meeting of the Biophysical Society of Japan)
12. Folding Simulation of a Mini Protein with a Hydrophobic Core and .ALPHA.-helices
13. 3PT130 Prediction of α-helical membrane protein structures by replica-exchange simulations with implicit membrane model(The 50th Annual Meeting of the Biophysical Society of Japan)
14. 3G1346 Protein Structure Predictions by Simulated Annealing Molecular Dynamics Using Genetic Crossover(3G Protein: Structure 4,The 49th Annual Meeting of the Biophysical Society of Japan)
15. 1H1336 Conformations of ubiquitin at high pressure studied by isobaric-isothermal simulated tempering simulations(Protein: Property 2,The 49th Annual Meeting of the Biophysical Society of Japan)
16. 1A1412 Phase Transition Behavior of Lipid Bilayer Studied by REMD with a Coarse-Grained Model(Biol & Artifi memb 1: Structure & Property, Dynamics,The 49th Annual Meeting of the Biophysical Society of Japan)
17. 3P018 A Simulated Annealing Molecular Dynamics Using Genetic Crossover with Knot Theory(Protein: Structure,The 48th Annual Meeting of the Biophysical Society of Japan)
18. 3P067 Folding simulations of a small helical protein by multicanonical replica-exchange method(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)
19. 3P075 Pressure dependence of protein conformations studied by generalized simulated tempering molecular dynamics simulations(Protein: Property,The 48th Annual Meeting of the Biophysical Society of Japan)
20. 1P235 1I1325 Phase behavior of DPPC bilayer studied by REMD with coarse-grained model(Biol & Artifi memb.:Structure & Property,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)
21. 3P-057 Prediction of membrane protein structures by replica-exchange Monte Carlo simulations(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)
22. 3P-056 A simulated annealing molecular dynamics simulation with a genetic crossover for protein systems(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)
23. 3P-054 Molecular dynamics study of temperature and pressure effects on a biomolecule with generalized-ensemble algorithms(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)
24. 2P-172 Replica-exchange molecular dynamics simulations of membrane systems(Biol & Artifi memb.:Structure & Property,The 47th Annual Meeting of the Biophysical Society of Japan)
25. 2P-001 Folding simulation using a new backbone-torsion energy term(The 46th Annual Meeting of the Biophysical Society of Japan)
26. 3P043 Role of Glycines on Amyloidogenesis of Alzheimer's Amyloid-Beta Peptide Fragments(Proteins-stability, folding, and other physicochemical properties,Poster Presentations)
27. 2P113 Simulated Annealing Molecular Dynamics Simulations of Gramicidin A in the Low-Dielectric Environment(Proteins-stability, folding, and other physicochemical properties,Poster Presentations)
28. 1P584 Amyloid β-peptides studied by the multicanonical-multioverlap algorithm(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
29. 1P585 Explicit Symplectic Molecular Dynamics Simulation for Rigid-Body Molecules in the Canonical Ensemble(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
30. 1P374 Normal Mode Analysis of a Small Membrane Polypeptide(14. Ion channels and receptors,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
31. 1P049 A new backbone-torsion-energy term represented by a double Fourier series(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
32. Optimizations of Protein Force-Field Parameters with Protein Data Bank
33. Simulations for Tertiary Structure Predicition
34. Solvent Effects on Formation of Tertiary Structure of Protein
35. Protein tertiary structure predictions by Monte Carlo simulations.
36. Folding Simulation of a Mini Protein with a Hydrophobic Core and α-helices.
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